##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139919_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32688308 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.756297725780115 34.0 31.0 34.0 31.0 34.0 2 32.80883540989641 34.0 31.0 34.0 31.0 34.0 3 32.89717237735278 34.0 31.0 34.0 31.0 34.0 4 36.312108323257355 37.0 37.0 37.0 35.0 37.0 5 36.255606530628626 37.0 37.0 37.0 35.0 37.0 6 36.32292671740611 37.0 37.0 37.0 35.0 37.0 7 36.2963913886274 37.0 37.0 37.0 35.0 37.0 8 36.30335415341779 37.0 37.0 37.0 35.0 37.0 9 38.09727218062189 39.0 39.0 39.0 35.0 39.0 10-11 38.07303193851453 39.0 39.0 39.0 35.0 39.0 12-13 38.06322228424916 39.0 39.0 39.0 35.0 39.0 14-15 39.56967162387237 41.0 40.0 41.0 37.0 41.0 16-17 39.58471935898304 41.0 40.0 41.0 37.0 41.0 18-19 39.629909721849174 41.0 40.0 41.0 37.0 41.0 20-21 39.64398998525526 41.0 40.0 41.0 37.0 41.0 22-23 39.602946451868554 41.0 40.0 41.0 37.0 41.0 24-25 39.57847191591368 41.0 40.0 41.0 37.0 41.0 26-27 39.50729776301027 41.0 40.0 41.0 36.0 41.0 28-29 39.45571315658043 41.0 39.0 41.0 36.0 41.0 30-31 39.37598847927454 41.0 39.0 41.0 36.0 41.0 32-33 39.30061086248956 41.0 39.0 41.0 35.5 41.0 34-35 39.2491956393709 41.0 39.0 41.0 35.0 41.0 36-37 39.20300170097978 41.0 39.0 41.0 35.0 41.0 38-39 39.15863250025397 41.0 39.0 41.0 35.0 41.0 40-41 39.123303565357006 41.0 39.0 41.0 35.0 41.0 42-43 39.051253277759145 41.0 39.0 41.0 35.0 41.0 44-45 38.67581317905143 40.5 38.5 41.0 34.5 41.0 46-47 38.73380738539767 40.0 38.0 41.0 34.5 41.0 48-49 38.816462445447 40.0 38.0 41.0 35.0 41.0 50-51 38.7800428925129 40.0 38.0 41.0 35.0 41.0 52-53 38.68727684156478 40.0 38.0 41.0 34.5 41.0 54-55 38.56793738161849 40.0 38.0 41.0 34.0 41.0 56-57 38.412784891282726 40.0 37.5 41.0 34.0 41.0 58-59 38.25930865274017 40.0 37.0 41.0 34.0 41.0 60-61 38.077889079674804 40.0 36.5 41.0 34.0 41.0 62-63 37.85046275995398 39.0 36.0 41.0 33.5 41.0 64-65 37.59942164551653 39.0 35.5 41.0 33.0 41.0 66-67 37.33565716889587 39.0 35.0 41.0 33.0 41.0 68-69 36.971185024879645 38.0 35.0 40.0 32.5 41.0 70-71 36.65805002042893 37.0 35.0 40.0 32.0 41.0 72-73 36.371961520470606 37.0 35.0 39.0 32.0 41.0 74-75 36.03296308737713 36.0 35.0 39.0 32.0 41.0 76-77 35.69487340913591 36.0 35.0 39.0 32.0 40.0 78-79 35.36012298262824 35.0 35.0 37.0 31.5 39.5 80-81 35.050329602931974 35.0 34.0 37.0 31.0 39.0 82-83 34.762854171784944 35.0 34.0 36.5 31.0 39.0 84-85 34.50855437610476 35.0 34.0 36.0 31.0 37.5 86-87 34.28882959973974 35.0 34.0 36.0 31.0 37.0 88-89 34.23793856453892 35.0 34.0 35.5 31.0 37.0 90-91 34.20587126598684 35.0 34.0 35.0 31.0 36.0 92-93 34.128874692752305 35.0 34.0 35.0 31.0 36.0 94-95 34.171702959827726 35.0 34.0 35.0 32.0 36.0 96-97 34.22084421406335 35.0 34.0 35.0 32.0 36.0 98-99 34.322186002260764 35.0 35.0 35.0 32.5 36.0 100 34.107897218216394 35.0 34.0 35.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 19.0 20 97.0 21 495.0 22 2253.0 23 8314.0 24 22491.0 25 49116.0 26 92073.0 27 148992.0 28 218888.0 29 297437.0 30 384921.0 31 488417.0 32 619273.0 33 800726.0 34 1105014.0 35 1623966.0 36 2711332.0 37 6055191.0 38 1.0486759E7 39 7073245.0 40 499282.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.55840063670472 20.328718145949924 13.881835058578131 24.231046158767228 2 14.292789336174879 21.771983426000514 41.377846782403054 22.55738045542155 3 17.295312440154444 27.435867895028398 31.00498502400308 24.263834640814082 4 11.847272731277496 18.88951853977881 40.044581077735806 29.21862765120789 5 12.469866933898457 38.58830618464537 36.13886306244156 12.802963819014623 6 28.310584322688097 39.493335048115675 19.50650367097618 12.689576958220048 7 25.223425452305452 33.254801686278775 24.349443232118347 17.172329629297423 8 24.031173897527996 36.80562538612887 21.81572611194024 17.347474604402898 9 25.676961252749976 16.32754908426245 21.31090032578599 36.68458933720158 10-11 23.57318510825882 26.83557497847128 29.867322738178558 19.723917175091344 12-13 24.791411547620697 24.6191642230457 29.619837096422437 20.96958713291117 14-15 21.978125391983795 25.70028421693492 27.24470649782937 25.07688389325191 16-17 21.38509432791688 28.792952513785664 27.77009902133815 22.051854136959307 18-19 21.46769113898462 28.00228295695207 29.48257982640154 21.047446077661775 20-21 22.403052221153658 27.19282639125443 29.239240874084864 21.164880513507043 22-23 22.072508716154363 27.134796272586232 29.12931910543061 21.663375905828797 24-25 21.779288000695754 27.267496370207667 29.25072964594293 21.70248598315365 26-27 21.802884777629373 27.382173278609567 29.108481498207272 21.706460445553784 28-29 21.77711641968714 27.394166861452717 29.115561582162442 21.7131551366977 30-31 22.063461431065925 27.2883840859723 28.988542062058464 21.65961242090331 32-33 21.879050519714873 27.493346656450147 28.92381436805282 21.703788455782156 34-35 22.002918838729475 27.43710406406948 28.960121110769126 21.59985598643192 36-37 21.976418778310855 27.383677901607467 28.906454849264442 21.733448470817233 38-39 21.84375214184412 27.47879089739896 28.937572435036024 21.739884525720893 40-41 22.08130936607923 27.319076133180666 28.80508870871623 21.794525792023876 42-43 21.980517886857527 27.44247396114712 28.606700842015826 21.970307309979535 44-45 22.227361095127836 27.55326411748658 28.357102226748726 21.862272560636857 46-47 22.21704319340832 27.574205851329314 28.04725986909018 22.161491086172187 48-49 22.13873961912718 27.70914198104381 27.99583885762213 22.15627954220688 50-51 22.125890771886766 27.836236534429727 27.837344703634702 22.2005279900488 52-53 22.293381230491594 27.71273225421455 27.80162932263664 22.192257192657213 54-55 22.232139035561246 27.624082095292803 27.899012263223433 22.24476660592252 56-57 22.246504847167547 27.720725234957445 27.84171766875411 22.191052249120897 58-59 22.228541790419882 27.782725508021333 27.824136897709266 22.16459580384952 60-61 22.29101305502445 27.791111379546823 27.784922713513282 22.13295285191544 62-63 22.233747816071357 27.853115648331755 27.739877306567568 22.17325922902932 64-65 22.226499718727172 27.79605301674655 27.729582689545218 22.247864574981058 66-67 22.2634207966303 27.87375060473294 27.592732528386072 22.270096070250688 68-69 22.272415923911776 27.8121382139342 27.684958308090362 22.230487554063657 70-71 22.282124437946766 27.548078860498933 27.738382166404264 22.431414535150036 72-73 22.28940140366181 27.60042086879996 27.684864708779678 22.425313018758548 74-75 22.155922739031595 27.789821459602525 27.668487205037458 22.385768596328422 76-77 22.32135384087157 27.718329739918108 27.5887632496641 22.371553169546225 78-79 22.30061996600843 27.73542477845744 27.556824822865572 22.407130432668563 80-81 22.2936022392453 27.770400048780242 27.527598582179095 22.408399129795363 82-83 22.332889185638905 27.68924001266913 27.63539767210216 22.342473129589802 84-85 22.399266163518995 27.7062859757098 27.58033233470415 22.314115526067056 86-87 22.258721796936054 27.74774515538871 27.66633116144131 22.327201886233926 88-89 22.327539964574417 27.74096981921587 27.574422024187406 22.357068192022304 90-91 22.368311483389967 27.731865958674888 27.65344693939799 22.24637561853715 92-93 22.401322194363658 27.704578182280287 27.5945332460939 22.299566377262156 94-95 22.244445531400046 27.731273213230622 27.686817291712 22.337463963657328 96-97 22.347816919821696 27.887165052295487 27.68971977932706 22.075298248555757 98-99 23.398233535037715 29.82304787813425 27.91193363108783 18.8667849557402 100 22.335241971817386 30.7107461109427 21.848925287069594 25.10508663017032 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5960.0 1 5956.5 2 9397.5 3 13240.5 4 17499.5 5 30342.5 6 41232.0 7 47774.5 8 50841.0 9 46915.0 10 38343.5 11 29662.0 12 30600.0 13 42911.0 14 75521.0 15 123423.5 16 162184.0 17 182598.5 18 185970.0 19 173456.5 20 152241.5 21 132765.5 22 123917.0 23 133555.0 24 163687.5 25 212821.5 26 276878.5 27 347302.5 28 415982.5 29 489492.0 30 562524.0 31 633814.0 32 713525.0 33 788770.0 34 863399.0 35 931751.5 36 1004025.5 37 1074637.0 38 1121461.0 39 1157523.0 40 1194216.0 41 1229088.5 42 1252006.0 43 1273254.0 44 1299888.5 45 1326382.0 46 1332229.0 47 1323605.0 48 1313520.0 49 1287593.5 50 1257299.5 51 1219490.0 52 1161690.5 53 1097636.0 54 1032923.5 55 959319.5 56 881822.5 57 799794.5 58 714137.0 59 628230.5 60 529170.5 61 430430.5 62 341801.5 63 263035.5 64 197574.0 65 145546.5 66 107796.0 67 82112.0 68 62390.0 69 45452.0 70 32776.0 71 23806.0 72 16963.5 73 11853.0 74 8304.5 75 5746.5 76 3907.0 77 2582.0 78 1775.0 79 1225.5 80 816.5 81 569.0 82 423.0 83 320.5 84 258.5 85 197.5 86 144.5 87 102.5 88 62.5 89 36.0 90 28.5 91 23.5 92 20.0 93 14.0 94 7.5 95 5.0 96 5.5 97 6.5 98 8.5 99 10.5 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06588288387395272 6 0.0 7 0.0 8 1.9272946155548948E-4 9 8.718713737034049E-4 10-11 4.588796703702131E-6 12-13 4.1911009893812797E-4 14-15 0.00614286918735592 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.013984039133892165 24-25 0.0 26-27 1.2243775092564853E-5 28-29 0.0027775859957237733 30-31 0.014041471034840936 32-33 0.0 34-35 2.770201234650988E-5 36-37 7.101275316490333E-5 38-39 6.357687105064547E-5 40-41 0.0 42-43 0.00480474648736808 44-45 0.02164304070727094 46-47 1.5931660314634043E-6 48-49 0.0027720051315179117 50-51 2.9443241091271994E-4 52-53 0.0 54-55 1.1466206044053425E-5 56-57 0.015017290163955239 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 1.53886919411797E-5 68-69 0.015760955044577835 70-71 0.023547351259448568 72-73 0.0 74-75 0.013215203498487784 76-77 0.0 78-79 0.01740705751365875 80-81 7.984854328310062E-5 82-83 0.0143390421629769 84-85 0.0 86-87 0.015221286022536348 88-89 0.030643736983758142 90-91 1.5226991715736124E-5 92-93 1.674372307652632E-4 94-95 0.01401963165067836 96-97 5.93481202472047E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 682.0 20-21 2728.0 22-23 5240.0 24-25 7361.0 26-27 12924.0 28-29 25229.0 30-31 55175.0 32-33 69745.0 34-35 90735.0 36-37 133409.0 38-39 169803.0 40-41 180350.0 42-43 213991.0 44-45 269340.0 46-47 259858.0 48-49 231974.0 50-51 203055.0 52-53 184671.0 54-55 195190.0 56-57 209827.0 58-59 217004.0 60-61 221533.0 62-63 211368.0 64-65 217351.0 66-67 234057.0 68-69 245824.0 70-71 252013.0 72-73 230284.0 74-75 226506.0 76-77 237413.0 78-79 255220.0 80-81 265261.0 82-83 252028.0 84-85 241723.0 86-87 250271.0 88-89 268241.0 90-91 288543.0 92-93 292160.0 94-95 339414.0 96-97 1013065.0 98-99 2018833.0 100-101 2.2388909E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.9897809525967 #Duplication Level Percentage of deduplicated Percentage of total 1 85.79324026660335 66.90996015605896 2 9.117880276010736 14.222029709561584 3 2.510848004701803 5.874614576758744 4 1.0602205453125277 3.3074547236146667 5 0.5334186123907325 2.0800600368195656 6 0.3108445067318169 1.4545616994199422 7 0.1980644681275751 1.081290313863351 8 0.11844207563031274 0.7389817227183187 9 0.08236514750623747 0.5781275830925799 >10 0.2684544196768533 3.188499685030831 >50 0.004612517340422193 0.23969838947438044 >100 0.0015014328048373242 0.20096920739817717 >500 5.4226705986443316E-5 0.028961668271934922 >1k 5.3500456735388794E-5 0.09479052791696818 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8355186814808526E-5 0.0 3.0591978024680875E-6 0.0 3 0.0 1.8355186814808526E-5 0.0 3.0591978024680875E-6 0.0 4 0.0 9.177593407404262E-5 0.0 3.0591978024680875E-6 0.0 5 0.0 9.177593407404262E-5 0.0 3.0591978024680875E-6 0.0 6 3.0591978024680875E-6 9.177593407404262E-5 0.0 3.0591978024680875E-6 9.177593407404263E-6 7 3.0591978024680875E-6 9.483513187651071E-5 0.0 1.5295989012340437E-5 9.177593407404263E-6 8 6.118395604936175E-6 1.0095352748144689E-4 0.0 1.5295989012340437E-5 9.177593407404263E-6 9 6.118395604936175E-6 2.0802545056782993E-4 0.0 2.7532780222212785E-5 1.5295989012340437E-5 10-11 1.223679120987235E-5 2.0802545056782993E-4 0.0 3.671037362961705E-5 1.5295989012340437E-5 12-13 1.223679120987235E-5 2.1261424727153205E-4 0.0 3.671037362961705E-5 1.8355186814808526E-5 14-15 1.3766390111106393E-5 3.365117582714896E-4 0.0 4.588796703702131E-5 2.7532780222212785E-5 16-17 1.5295989012340437E-5 3.6251493959246837E-4 0.0 5.9654357148127704E-5 3.365117582714896E-5 18-19 1.8355186814808526E-5 4.068733077282556E-4 0.0 6.424315385182984E-5 3.365117582714896E-5 20-21 1.8355186814808526E-5 4.588796703702131E-4 0.0 6.424315385182984E-5 3.365117582714896E-5 22-23 1.988478571604257E-5 5.292412198269791E-4 0.0 6.730235165429793E-5 4.282876923455322E-5 24-25 2.141438461727661E-5 5.93484373678809E-4 0.0 7.495034616046813E-5 5.506556044442557E-5 26-27 2.141438461727661E-5 6.271355495059579E-4 0.0 1.1013112088885114E-4 5.812475824689366E-5 28-29 2.2943983518510656E-5 6.28665148407192E-4 0.0 3.0286058244434065E-4 5.812475824689366E-5 30-31 2.7532780222212785E-5 6.913787033577878E-4 0.0 0.0010569528407527243 6.118395604936175E-5 32-33 2.7532780222212785E-5 7.097338901725963E-4 0.0 0.002805284384863236 8.565753846910644E-5 34-35 2.7532780222212785E-5 8.259834066663836E-4 0.0 0.005064501961985919 9.78943296789788E-5 36-37 2.7532780222212785E-5 9.46821719863873E-4 0.0 0.008678944165601964 9.78943296789788E-5 38-39 2.7532780222212785E-5 9.712953022836177E-4 0.0 0.018873720842326865 1.0401272528391496E-4 40-41 3.0591978024680874E-5 0.0010294200605305115 0.0 0.030616451607100616 1.0707192308638305E-4 42-43 3.671037362961705E-5 0.0010676600330613625 0.0 0.03784992481103641 1.1013112088885114E-4 44-45 3.671037362961705E-5 0.0011716727583452775 0.0 0.046256600372218716 1.1319031869131923E-4 46-47 3.671037362961705E-5 0.0012405047089008095 0.0 0.05506097164772187 1.2083831319748945E-4 48-49 3.671037362961705E-5 0.0012466231045057457 0.0 0.06367261346166954 1.3766390111106394E-4 50-51 3.671037362961705E-5 0.0013949941979254478 0.0 0.07261005984158006 1.422526978147661E-4 52-53 3.8239972530851096E-5 0.0014026421924316181 0.0 0.09327647059615322 1.575486868271065E-4 54-55 3.9769571432085134E-5 0.0014255861759501286 0.0 0.11575698564758996 1.7284467583944692E-4 56-57 3.9769571432085134E-5 0.0014424117638637032 0.0 0.13779850581437253 1.7590387364191504E-4 58-59 3.9769571432085134E-5 0.0014470005605674054 0.0 0.1512681537386395 1.789630714443831E-4 60-61 3.9769571432085134E-5 0.0015112437144192351 0.0 0.1621038323549815 1.8202226924685121E-4 62-63 4.282876923455322E-5 0.0015525428847525543 0.0 0.17103974913599077 1.927294615554895E-4 64-65 4.282876923455322E-5 0.001748331544110512 0.0 0.17572338097156942 1.927294615554895E-4 66-67 4.282876923455322E-5 0.0017758643243327246 0.0 0.18036877283461722 1.9731825825919163E-4 68-69 4.282876923455322E-5 0.0018141042968635758 0.0 0.18512582541745506 2.0190705496289378E-4 70-71 4.588796703702131E-5 0.0018431666759870227 0.0 0.189517303862898 2.0955504946906399E-4 72-73 4.89471648394894E-5 0.0018538738682956609 0.0 0.1929084246269339 2.2943983518510655E-4 74-75 4.89471648394894E-5 0.0019181170221474909 0.0 0.19563111067113048 2.2943983518510655E-4 76-77 4.89471648394894E-5 0.00202365934633264 0.0 0.19821919201201849 2.2943983518510655E-4 78-79 4.89471648394894E-5 0.002090961697986938 0.0 0.20002411871547465 2.2943983518510655E-4 80-81 5.200636264195748E-5 0.00209555049469064 0.0 0.20058089271552387 2.3555823079004273E-4 82-83 5.200636264195748E-5 0.002101668890295576 0.0 0.2009250524683015 2.493246209011491E-4 84-85 5.200636264195748E-5 0.0021139056815054486 0.0 0.20104894997930148 2.5085421980238317E-4 86-87 5.200636264195748E-5 0.0021521456540362994 0.0 0.20108413075402984 2.523838187036172E-4 88 5.200636264195748E-5 0.002337227121085619 0.0 0.2010871899518323 2.5697261540731935E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 42025 0.0 51.528908 1 GTATCAA 77330 0.0 38.599567 1 TCAACGC 94900 0.0 30.7985 4 ATCAACG 94940 0.0 30.767334 3 CAACGCA 96715 0.0 30.216055 5 AACGCAG 99860 0.0 29.332218 6 TATCAAC 100980 0.0 29.230215 2 ACGCAGA 114175 0.0 25.617058 7 CGCAGAG 115665 0.0 25.287174 8 GTACATG 98465 0.0 21.712002 1 GCAGAGT 136850 0.0 21.346483 9 TACATGG 97575 0.0 21.34374 2 ACATGGG 98220 0.0 20.592865 3 AGAGTAC 121940 0.0 19.805521 10-11 GAGTACT 80520 0.0 19.667063 12-13 CAGAGTA 132510 0.0 18.927422 10-11 CATGGGG 69745 0.0 18.477293 4 AGTACTT 86810 0.0 17.744986 12-13 GTACTTT 90900 0.0 17.345673 14-15 GTGGTAT 18770 0.0 15.617324 1 >>END_MODULE