##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139918_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32666323 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.74348533197324 34.0 31.0 34.0 31.0 34.0 2 32.79719443783128 34.0 31.0 34.0 31.0 34.0 3 32.8839700752362 34.0 31.0 34.0 31.0 34.0 4 36.303155546462946 37.0 37.0 37.0 35.0 37.0 5 36.24806667098712 37.0 37.0 37.0 35.0 37.0 6 36.31682623110045 37.0 37.0 37.0 35.0 37.0 7 36.290384840681334 37.0 37.0 37.0 35.0 37.0 8 36.297686488926225 37.0 37.0 37.0 35.0 37.0 9 38.08664611563413 39.0 39.0 39.0 35.0 39.0 10-11 38.064188981416734 39.0 39.0 39.0 35.0 39.0 12-13 38.052366637653094 39.0 39.0 39.0 35.0 39.0 14-15 39.5488084012394 41.0 40.0 41.0 37.0 41.0 16-17 39.56585312647523 41.0 40.0 41.0 37.0 41.0 18-19 39.61593372477215 41.0 40.0 41.0 37.0 41.0 20-21 39.63239596562211 41.0 40.0 41.0 37.0 41.0 22-23 39.58953342563004 41.0 40.0 41.0 37.0 41.0 24-25 39.56386943213616 41.0 40.0 41.0 36.0 41.0 26-27 39.489997426577304 41.0 39.5 41.0 36.0 41.0 28-29 39.43788317238834 41.0 39.0 41.0 36.0 41.0 30-31 39.35541040440137 41.0 39.0 41.0 36.0 41.0 32-33 39.27452260196699 41.0 39.0 41.0 35.0 41.0 34-35 39.22381803677 41.0 39.0 41.0 35.0 41.0 36-37 39.17899124604806 41.0 39.0 41.0 35.0 41.0 38-39 39.135171056420496 41.0 39.0 41.0 35.0 41.0 40-41 39.10196103848791 41.0 39.0 41.0 35.0 41.0 42-43 39.030983307109196 41.0 39.0 41.0 35.0 41.0 44-45 38.65438747600737 40.5 38.5 41.0 34.5 41.0 46-47 38.7151520327512 40.0 38.0 41.0 34.5 41.0 48-49 38.8007934156055 40.0 38.0 41.0 35.0 41.0 50-51 38.767815619160544 40.0 38.0 41.0 35.0 41.0 52-53 38.67893066280084 40.0 38.0 41.0 34.5 41.0 54-55 38.56287285269835 40.0 38.0 41.0 34.0 41.0 56-57 38.40909946019985 40.0 37.5 41.0 34.0 41.0 58-59 38.25947581951611 40.0 37.0 41.0 34.0 41.0 60-61 38.08075981477603 40.0 37.0 41.0 34.0 41.0 62-63 37.8589988760351 39.5 36.0 41.0 33.5 41.0 64-65 37.61368600797479 39.0 36.0 41.0 33.0 41.0 66-67 37.354688374476254 39.0 35.0 41.0 33.0 41.0 68-69 36.99530038021521 38.0 35.0 40.5 32.5 41.0 70-71 36.68695980380099 37.0 35.0 40.0 32.0 41.0 72-73 36.406212612080196 37.0 35.0 39.5 32.0 41.0 74-75 36.07100832921508 36.0 35.0 39.0 32.0 41.0 76-77 35.734552157185725 36.0 35.0 39.0 32.0 40.5 78-79 35.39977596753821 35.5 35.0 37.5 31.5 39.5 80-81 35.08763085333066 35.0 34.0 37.0 31.0 39.0 82-83 34.79671096133954 35.0 34.0 37.0 31.0 39.0 84-85 34.54003820740883 35.0 34.0 36.0 31.0 37.5 86-87 34.317887765899215 35.0 34.0 36.0 31.0 37.0 88-89 34.26278992439558 35.0 34.0 36.0 31.0 37.0 90-91 34.22715413981945 35.0 34.0 35.0 31.0 36.5 92-93 34.14693420207911 35.0 34.0 35.0 31.0 36.0 94-95 34.18592080128546 35.0 34.0 35.0 32.0 36.0 96-97 34.230880798780525 35.0 34.0 35.0 32.0 36.0 98-99 34.33036115767513 35.0 35.0 35.0 32.5 36.0 100 34.11772474398493 35.0 34.0 35.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 24.0 20 103.0 21 510.0 22 2391.0 23 8353.0 24 23045.0 25 49734.0 26 92443.0 27 149544.0 28 219402.0 29 296735.0 30 386249.0 31 491516.0 32 622541.0 33 803860.0 34 1110715.0 35 1631852.0 36 2679898.0 37 5971374.0 38 1.0299199E7 39 7279128.0 40 547702.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.62091950171435 20.502084057639422 13.927398562733858 23.949597877912367 2 14.212557685173199 21.88437002842346 41.57154755372988 22.331524732673465 3 17.198651344995273 27.84082861116631 31.098495536213242 23.862024507625176 4 11.671074825287192 18.989933455320333 40.244737676781064 29.094254042611407 5 12.235535751089127 38.87228986406526 36.127241450379 12.764932934466607 6 27.919414131795612 39.712014725379404 19.632650421046776 12.735920721778204 7 24.969085133946663 33.53655383864294 24.454521557262506 17.039839470147893 8 23.97777878867453 36.84943972476071 21.837172941651794 17.33560854491297 9 25.733369831974816 16.2450128659548 21.415168699888348 36.606448602182034 10-11 23.501026531239116 27.005042073607182 29.82886013307528 19.665071262078417 12-13 24.80263887463486 24.849277299569376 29.641368573737424 20.706715252058338 14-15 21.90913940514613 25.82699780264861 27.429806065179672 24.834056727025587 16-17 21.147577583188657 28.972530823257948 27.9310668054069 21.948824788146496 18-19 21.21910843776326 28.073960145437855 29.81614888213773 20.890782534661156 20-21 22.298445380544397 27.19226715810511 29.540834080088878 20.96845338126161 22-23 21.968559239697786 27.167199785075614 29.42438660251373 21.439854372712873 24-25 21.574941071003412 27.350448197220555 29.528329172513633 21.546281559262397 26-27 21.56522361607469 27.46178974369083 29.43994864268813 21.53303799754636 28-29 21.516686652267268 27.462467829716093 29.477306910220424 21.54353860779621 30-31 21.85093763461423 27.341134573447917 29.31096631835764 21.496961473580214 32-33 21.653787938525802 27.52877058832662 29.25773119495875 21.559710278188827 34-35 21.784072717524797 27.496743225309206 29.27933753093008 21.439846526235925 36-37 21.757799907074478 27.458636932560964 29.208705930921237 21.57485722944332 38-39 21.668286111212883 27.5305370872378 29.232659847628963 21.568516953920362 40-41 21.858238989611543 27.390738173538054 29.140016797398633 21.611006039451773 42-43 21.781876186671738 27.50408756688456 28.909798743116244 21.804237503327457 44-45 22.020039488650507 27.636211397953765 28.619480413144387 21.72426870025134 46-47 22.014044321430287 27.686169225588465 28.29928639407123 22.00050005891002 48-49 21.97660911848761 27.815970777167603 28.1766133462943 22.030806758050485 50-51 21.954932685352123 27.965474425512436 27.996410124185545 22.083182764949893 52-53 22.081969218707197 27.83933666683574 27.964200016372242 22.114494098084815 54-55 22.051401496595304 27.754572989657415 28.05704359010551 22.13698192364177 56-57 22.044256192816416 27.843068776449424 28.000745054422225 22.111929976311934 58-59 22.014926777828418 27.90357173493655 28.003978943716028 22.077522543519006 60-61 22.10508513748152 27.88978292881733 27.980956967513226 22.024174966187925 62-63 22.037325658259466 27.957390544009513 27.94050312871027 22.06478066902075 64-65 22.009893460560235 27.919592738634492 27.911753780464743 22.15876002034053 66-67 22.120580689252346 27.952857508868668 27.790046873421737 22.136514928457252 68-69 22.11662662507538 27.92718731568215 27.816693701837885 22.13949235740458 70-71 22.09901187804693 27.682874278358266 27.937766835069876 22.280347008524924 72-73 22.107587116632015 27.72219696229039 27.860671910561123 22.309544010516472 74-75 22.027413956582418 27.887052916318154 27.822780998349256 22.262752128750172 76-77 22.143625226630707 27.855948210465815 27.75784956455683 22.24257699834665 78-79 22.11948730301498 27.844271589418323 27.720347681617685 22.315893425949014 80-81 22.115480743513537 27.878298269569395 27.70749086781361 22.298730119103453 82-83 22.15085500725282 27.829700199941236 27.817142472138954 22.202302320666984 84-85 22.21630484871905 27.85763805402766 27.736280136597536 22.189776960655756 86-87 22.058510089659578 27.937763478507726 27.805574507345458 22.198151924487235 88-89 22.13974079458939 27.90696482917988 27.731293490561644 22.222000885669082 90-91 22.214091716318688 27.841379471713033 27.804707180351567 22.13982163161671 92-93 22.2129881903063 27.8471624651778 27.75879398517293 22.181055359342967 94-95 22.04210882963875 27.91140789074892 27.819919346672194 22.226563932940138 96-97 22.125095963777156 28.07483104372614 27.868628949828043 21.93144404266866 98-99 23.185109158003804 29.986753462415667 28.05405885478604 18.774078524794486 100 22.12274698180292 30.917463918778893 21.9774602976187 24.982328801799486 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 7202.0 1 7236.5 2 10984.0 3 15094.0 4 19760.0 5 34134.0 6 46297.0 7 54098.5 8 58101.0 9 53602.5 10 43611.5 11 33201.5 12 34020.5 13 48116.5 14 85442.5 15 140179.0 16 184451.0 17 207435.0 18 209833.0 19 194484.5 20 169723.0 21 146607.5 22 135746.0 23 145158.0 24 175805.0 25 226298.0 26 292947.5 27 365259.5 28 438322.0 29 519011.5 30 597895.0 31 673127.5 32 756479.0 33 835187.0 34 907422.0 35 972475.5 36 1035577.0 37 1095813.0 38 1134838.0 39 1160007.0 40 1190047.5 41 1212425.5 42 1225208.0 43 1248766.0 44 1279371.0 45 1307504.5 46 1313373.5 47 1310338.5 48 1305235.0 49 1280160.0 50 1251021.0 51 1215157.5 52 1161700.5 53 1098380.5 54 1028800.0 55 951796.0 56 873399.0 57 789037.5 58 700751.0 59 611959.5 60 515306.5 61 419041.0 62 328296.0 63 250961.0 64 188750.0 65 138287.5 66 100523.5 67 74631.0 68 55371.5 69 39404.0 70 28249.5 71 20671.0 72 15068.5 73 10900.0 74 7809.5 75 5435.5 76 3746.5 77 2497.0 78 1639.5 79 1084.5 80 746.0 81 548.5 82 415.5 83 294.0 84 218.0 85 159.5 86 119.5 87 96.0 88 62.0 89 36.0 90 22.0 91 15.0 92 13.5 93 11.5 94 8.5 95 7.0 96 7.0 97 8.0 98 8.5 99 9.0 100 15.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06684253994549677 6 0.0 7 0.0 8 1.7449163164155328E-4 9 8.173555376893813E-4 10-11 3.0612566954658473E-6 12-13 3.8418771528096377E-4 14-15 0.0061163908775407625 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.014100625344593503 24-25 0.0 26-27 1.2252434769377398E-5 28-29 0.002831764459716427 30-31 0.01398610946305198 32-33 0.0 34-35 3.698339855304302E-5 36-37 7.576284799905448E-5 38-39 5.9041404991534394E-5 40-41 0.0 42-43 0.0050398907985908315 44-45 0.021818489699440436 46-47 0.0 48-49 0.0028163052771569786 50-51 3.3857424562077E-4 52-53 0.0 54-55 1.484396641008321E-5 56-57 0.015177498931853828 58-59 1.6731467080955639E-6 60-61 0.0 62-63 0.0 64-65 0.0 66-67 3.2800698330320156E-5 68-69 0.0162379717333219 70-71 0.023778738338910935 72-73 0.0 74-75 0.013588013505033268 76-77 0.0 78-79 0.017616831636764557 80-81 9.006591354407532E-5 82-83 0.014758073160863795 84-85 0.0 86-87 0.015682998165384404 88-89 0.03131589721153971 90-91 2.318584796123651E-5 92-93 1.6810840145779698E-4 94-95 0.014099503003894466 96-97 6.032769764047516E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 650.0 20-21 2755.0 22-23 5497.0 24-25 8078.0 26-27 13666.0 28-29 28194.0 30-31 61251.0 32-33 76604.0 34-35 99319.0 36-37 145410.0 38-39 186474.0 40-41 197863.0 42-43 232792.0 44-45 295515.0 46-47 284636.0 48-49 253291.0 50-51 217334.0 52-53 192098.0 54-55 203006.0 56-57 221852.0 58-59 230915.0 60-61 237697.0 62-63 222116.0 64-65 226768.0 66-67 245898.0 68-69 256118.0 70-71 265784.0 72-73 238232.0 74-75 234599.0 76-77 245863.0 78-79 264462.0 80-81 277573.0 82-83 259727.0 84-85 247999.0 86-87 256011.0 88-89 277626.0 90-91 298941.0 92-93 300267.0 94-95 342401.0 96-97 1003793.0 98-99 1975635.0 100-101 2.2031613E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.08172033022359 #Duplication Level Percentage of deduplicated Percentage of total 1 85.61848789805133 65.99620339254226 2 8.915436134929609 13.74434309549227 3 2.6536943292507815 6.136539723876272 4 1.1213457967853881 3.457410524051321 5 0.587416810194226 2.2639549140331683 6 0.3358367611901709 1.5532125181601306 7 0.21254050432053226 1.1468091399015965 8 0.13792052387838344 0.8504920999513181 9 0.1013788861945232 0.7033013057732223 >10 0.30907100678877697 3.585593371972409 >50 0.0052132048547875835 0.2733709617245289 >100 0.0015731836300856635 0.19062790481900832 >500 4.7470571556279205E-5 0.024958533068551197 >1k 3.7489359932240926E-5 0.07318251463390761 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.0612566954658473E-6 0.0 0.0 3.0612566954658473E-6 0.0 2 3.0612566954658473E-6 3.061256695465847E-5 0.0 9.183770086397542E-6 0.0 3 3.0612566954658473E-6 3.367382365012432E-5 0.0 1.8367540172795083E-5 0.0 4 3.0612566954658473E-6 1.0102147095037296E-4 0.0 3.979633704105601E-5 3.0612566954658473E-6 5 6.122513390931695E-6 1.040827276458388E-4 0.0 3.979633704105601E-5 3.0612566954658473E-6 6 6.122513390931695E-6 1.040827276458388E-4 0.0 3.979633704105601E-5 1.5306283477329235E-5 7 9.183770086397542E-6 1.040827276458388E-4 0.0 5.510262051838525E-5 1.5306283477329235E-5 8 9.183770086397542E-6 1.2245026781863388E-4 0.0 7.040890399571449E-5 1.8367540172795083E-5 9 9.183770086397542E-6 1.7755288833701914E-4 0.0 1.0714398434130465E-4 2.7551310259192626E-5 10-11 2.142879686826093E-5 1.7755288833701914E-4 0.0 1.2551152451409974E-4 2.7551310259192626E-5 12-13 3.6735080345590166E-5 1.80614145032485E-4 0.0 1.3775655129596315E-4 2.7551310259192626E-5 14-15 4.4388222084254784E-5 2.20410482073541E-4 0.0 1.5765471981649113E-4 3.826570869332309E-5 16-17 5.3571992170652324E-5 2.2959425215993856E-4 0.0 1.683691182506216E-4 4.898010712745356E-5 18-19 5.510262051838525E-5 2.525536773759324E-4 0.0 1.821447733802179E-4 5.20413638229194E-5 20-21 5.969450556158402E-5 2.770437309396592E-4 0.0 2.0510419859621175E-4 5.20413638229194E-5 22-23 7.19395323434474E-5 3.1837069632844814E-4 0.0 2.4490053563726777E-4 5.81638772138511E-5 24-25 9.03070725162425E-5 3.4898326328310655E-4 0.0 3.076562978943176E-4 7.653141738664618E-5 26-27 1.040827276458388E-4 3.6888143180363456E-4 0.0 3.826570869332309E-4 7.959267408211202E-5 28-29 1.0714398434130465E-4 3.7041206015136753E-4 0.0 7.255178368254058E-4 7.959267408211202E-5 30-31 1.1938901112316804E-4 4.132696538878894E-4 0.0 0.0019102241779706886 8.41845591253108E-5 32-33 1.362259229482302E-4 4.163309105833552E-4 0.0 0.004379127702863894 8.877644416850957E-5 34-35 1.5765471981649113E-4 5.00515469708666E-4 0.0 0.007310280988772443 1.0102147095037296E-4 36-37 1.7755288833701914E-4 5.908225422249085E-4 0.0 0.012209822329865533 1.0102147095037296E-4 38-39 1.8673665842341665E-4 6.306188792659645E-4 0.0 0.027381410512594268 1.0561335599357173E-4 40-41 1.9285917181434837E-4 7.102115533480765E-4 0.0 0.04459179565450326 1.0714398434130465E-4 42-43 1.9898168520528006E-4 7.362322352595363E-4 0.0 0.05434189822956199 1.0867461268903758E-4 44-45 2.0510419859621175E-4 8.188861660371142E-4 0.0 0.06541752495375741 1.1326649773223635E-4 46-47 2.1122671198714346E-4 8.755194149032323E-4 0.0 0.07733193601251051 1.2245026781863388E-4 48-49 2.1122671198714346E-4 8.785806715986982E-4 0.0 0.08881164862050743 1.438790646868948E-4 50-51 2.142879686826093E-4 9.688877441149407E-4 0.0 0.10068779397056718 1.438790646868948E-4 52-53 2.20410482073541E-4 9.704183724626736E-4 0.0 0.13306517541016172 1.5765471981649113E-4 54-55 2.20410482073541E-4 9.857246559400027E-4 0.0 0.16916657561979043 1.7755288833701914E-4 56-57 2.20410482073541E-4 0.001004092196112798 0.0 0.20198936990857524 1.821447733802179E-4 58-59 2.20410482073541E-4 0.0010132759661991954 0.0 0.2175420845498895 1.8367540172795082E-4 60-61 2.2347173876900684E-4 0.001037766019762922 0.0 0.22863760944260547 1.8367540172795082E-4 62-63 2.2347173876900684E-4 0.001060725444978916 0.0 0.23736372165303088 1.9592042850981423E-4 64-65 2.2653299546447267E-4 0.0011755225710588853 0.0 0.24308061853181334 1.9898168520528006E-4 66-67 2.326555088554044E-4 0.0011923594828839473 0.0 0.2486214931506065 2.00512313553013E-4 68-69 2.4183927894180193E-4 0.0012275639348818049 0.0 0.2539128753487192 2.0204294190074592E-4 70-71 2.4490053563726777E-4 0.0012505233600977987 0.0 0.2589532344978037 2.0510419859621178E-4 72-73 2.464311639850007E-4 0.0012520539884455315 0.0 0.26269409017966305 2.1734922537807515E-4 74-75 2.479617923327336E-4 0.0012918503254865875 0.0 0.2655349363930553 2.1734922537807515E-4 76-77 2.510230490281995E-4 0.0013484835743527057 0.0 0.2682043522315015 2.2194111042127393E-4 78-79 2.6020681911459703E-4 0.0013729736279164324 0.0 0.26996151357469894 2.2347173876900684E-4 80-81 2.6020681911459703E-4 0.001380626769655097 0.0 0.27055233611692386 2.2653299546447267E-4 82-83 2.663293325055287E-4 0.0013928717964369606 0.0 0.2710436678165461 2.3877802224633608E-4 84-85 2.724518458964604E-4 0.0014112393366097556 0.0 0.2712319351033172 2.3877802224633608E-4 86-87 2.724518458964604E-4 0.0014326681334780164 0.0 0.27127785395374926 2.4030865059406902E-4 88 2.724518458964604E-4 0.001542873374514787 0.0 0.27128550709548793 2.479617923327336E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 46625 0.0 54.27764 1 GTATCAA 87355 0.0 38.802235 1 ATCAACG 108985 0.0 30.498814 3 TCAACGC 109485 0.0 30.379135 4 CAACGCA 111075 0.0 29.93654 5 TATCAAC 113370 0.0 29.580263 2 AACGCAG 114950 0.0 29.02716 6 ACGCAGA 131610 0.0 25.281218 7 CGCAGAG 133030 0.0 24.998579 8 GTACATG 118250 0.0 22.163485 1 TACATGG 118040 0.0 21.733839 2 GCAGAGT 155740 0.0 21.34485 9 ACATGGG 118745 0.0 20.979563 3 GAGTACT 88065 0.0 19.89427 12-13 AGAGTAC 141645 0.0 19.533068 10-11 CAGAGTA 153000 0.0 18.855865 10-11 CATGGGG 79375 0.0 18.612791 4 AGTACTT 95120 0.0 17.879782 12-13 GTACTTT 100090 0.0 17.474508 14-15 GTGGTAT 18895 0.0 16.855412 1 >>END_MODULE