##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139916_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32110960 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.791700528417714 34.0 31.0 34.0 31.0 34.0 2 32.8480706275988 34.0 31.0 34.0 31.0 34.0 3 32.93661042833973 34.0 31.0 34.0 31.0 34.0 4 36.33830981695969 37.0 37.0 37.0 35.0 37.0 5 36.2820006938441 37.0 37.0 37.0 35.0 37.0 6 36.34668353110589 37.0 37.0 37.0 35.0 37.0 7 36.32226034350888 37.0 37.0 37.0 35.0 37.0 8 36.32831696716635 37.0 37.0 37.0 35.0 37.0 9 38.13095351244559 39.0 39.0 39.0 37.0 39.0 10-11 38.10727377817418 39.0 39.0 39.0 36.0 39.0 12-13 38.096786268613585 39.0 39.0 39.0 35.0 39.0 14-15 39.616121255795534 41.0 40.0 41.0 37.0 41.0 16-17 39.630707724091714 41.0 40.0 41.0 37.0 41.0 18-19 39.671640041281854 41.0 40.0 41.0 37.0 41.0 20-21 39.68485390456362 41.0 40.0 41.0 37.0 41.0 22-23 39.64444657707003 41.0 40.0 41.0 37.0 41.0 24-25 39.621380171333826 41.0 40.0 41.0 37.0 41.0 26-27 39.55216779238831 41.0 40.0 41.0 36.5 41.0 28-29 39.50324063661215 41.0 40.0 41.0 36.0 41.0 30-31 39.43049989119843 41.0 39.0 41.0 36.0 41.0 32-33 39.36073795714201 41.0 39.0 41.0 36.0 41.0 34-35 39.31136328998885 41.0 39.0 41.0 35.0 41.0 36-37 39.26682807615486 41.0 39.0 41.0 35.0 41.0 38-39 39.22249830519554 41.0 39.0 41.0 35.0 41.0 40-41 39.186991279962115 41.0 39.0 41.0 35.0 41.0 42-43 39.1125439802034 41.0 39.0 41.0 35.0 41.0 44-45 38.738135974634716 41.0 38.5 41.0 34.5 41.0 46-47 38.796486506956214 41.0 38.0 41.0 34.5 41.0 48-49 38.876729004953525 40.0 38.0 41.0 35.0 41.0 50-51 38.83657138702047 40.0 38.0 41.0 35.0 41.0 52-53 38.74211264472622 40.0 38.0 41.0 35.0 41.0 54-55 38.621519455657435 40.0 38.0 41.0 34.5 41.0 56-57 38.46280410030522 40.0 37.5 41.0 34.0 41.0 58-59 38.31153990206663 40.0 37.0 41.0 34.0 41.0 60-61 38.128806849815774 40.0 37.0 41.0 34.0 41.0 62-63 37.90440077439237 39.5 36.0 41.0 34.0 41.0 64-65 37.662443003795474 39.0 36.0 41.0 33.0 41.0 66-67 37.39947831629428 39.0 35.0 41.0 33.0 41.0 68-69 37.033089692978436 38.0 35.0 40.5 33.0 41.0 70-71 36.716730979728254 37.0 35.0 40.0 32.0 41.0 72-73 36.43305366647107 37.0 35.0 39.5 32.0 41.0 74-75 36.085992425749275 36.0 35.0 39.0 32.0 41.0 76-77 35.73984072072041 36.0 35.0 39.0 32.0 40.5 78-79 35.395165992668325 35.5 35.0 37.5 32.0 39.5 80-81 35.06910056158807 35.0 34.5 37.0 31.0 39.0 82-83 34.76872548832434 35.0 34.0 36.5 31.0 39.0 84-85 34.517288925370835 35.0 34.0 36.0 31.0 37.0 86-87 34.29145683318727 35.0 34.0 36.0 31.0 37.0 88-89 34.24045850485078 35.0 34.0 35.5 31.0 37.0 90-91 34.21516398135232 35.0 34.0 35.0 31.0 36.0 92-93 34.13805911888282 35.0 34.0 35.0 31.0 36.0 94-95 34.17039165550044 35.0 34.0 35.0 32.0 36.0 96-97 34.216044864608804 35.0 34.0 35.0 32.0 36.0 98-99 34.323487454227006 35.0 35.0 35.0 32.5 36.0 100 34.0991200380988 35.0 34.0 35.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 23.0 20 96.0 21 485.0 22 2214.0 23 7993.0 24 21398.0 25 47048.0 26 87717.0 27 142964.0 28 210427.0 29 285035.0 30 369130.0 31 466917.0 32 591347.0 33 765416.0 34 1066946.0 35 1568784.0 36 2628714.0 37 5975326.0 38 1.0581672E7 39 6838551.0 40 452755.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.34428556480404 20.484002969702555 13.920879350850923 24.250832114642478 2 14.14057381031274 21.71843507637268 41.56227344184042 22.578717671474163 3 17.220867890589382 27.568113815345292 30.927184986060833 24.283833308004493 4 11.82020718159781 18.866231342818775 40.08749349131885 29.226067984264564 5 12.470537898186729 38.7035833806229 36.15266412440444 12.67321459678593 6 28.34071295283604 39.371130604628455 19.667499819376314 12.620656623159196 7 25.288403087294803 33.175526362338594 24.46068258314295 17.07538796722365 8 24.077264523596707 36.7931812025593 21.89719671979113 17.23235755405286 9 25.776581748214745 16.372629064421506 21.385377311586183 36.46541187577756 10-11 23.64969111713062 26.840302820608734 29.858311454639384 19.65169460762126 12-13 24.813497560325423 24.601986431996174 29.633024237298063 20.951491770380347 14-15 21.990319998461487 25.68105980935397 27.171008922503226 25.15761126968131 16-17 21.456424846843568 28.737424854317656 27.703374486468174 22.102775812370602 18-19 21.496551333251947 28.045218828711445 29.35444627005857 21.103783567978034 20-21 22.493099554717507 27.222144719698566 29.02253033398515 21.26222539159878 22-23 22.15533867776609 27.195311340386663 28.927450189727832 21.721899792119416 24-25 21.810388838582366 27.361161908258484 29.025359005475256 21.803090247683894 26-27 21.849466593046234 27.455903376890216 28.89432629436875 21.800303735694797 28-29 21.81556276591558 27.46022882913564 28.92448435903021 21.799724045918573 30-31 22.102172530796857 27.315432616383482 28.79689084434787 21.785504008471786 32-33 21.910739191727775 27.53211855232729 28.75543040726779 21.80171184867715 34-35 22.02985168500064 27.498458202258274 28.772142332171054 21.699547780570033 36-37 22.012282133661273 27.432616829986774 28.75538656041514 21.79971447593681 38-39 21.89401909402171 27.501398873446885 28.766864590547513 21.837717441983887 40-41 22.164744051368583 27.315531702676505 28.726257809593434 21.793466436361477 42-43 21.965080358406226 27.42610385732795 28.548982774474702 22.059833009791124 44-45 22.21216347105387 27.527109276216006 28.296119835223493 21.96460741750663 46-47 22.16651330396292 27.52680865427465 28.14398198517597 22.162696056586462 48-49 22.10958612319934 27.72866108819287 28.00458351089294 22.157169277714853 50-51 22.05180511951152 27.85429343451974 27.77485821241246 22.31904323355628 52-53 22.131730370686288 27.666316573211986 27.742384268616654 22.459568787485075 54-55 22.24440601685916 27.43473515126383 28.005817062012227 22.315041769864784 56-57 22.113908902197917 27.26546585989853 28.10114727615388 22.519477961749672 58-59 21.977734169002986 27.19878262925809 28.11610306943636 22.707380132302564 60-61 22.15610083654719 27.354045655904603 28.313471805938427 22.176381701609778 62-63 21.79664165474652 27.578565612712836 28.27865457878091 22.346138153759735 64-65 21.678354060910358 27.796277765309263 27.99595573450745 22.529412439272928 66-67 21.752007894928397 28.23937867487188 27.628474562695487 22.380138867504236 68-69 21.833472944524125 28.209310543477134 27.499366498878658 22.457850013120087 70-71 21.84917403589758 27.71243016839731 27.53765636065139 22.90073943505372 72-73 21.979581432608285 27.396138763935728 27.505968574432732 23.118311229023256 74-75 21.9824122676201 27.503515876657268 27.669210450326354 22.84486140539628 76-77 22.288052465341245 27.394038333422806 27.18232357323331 23.135585628002637 78-79 22.388706197283856 27.473478948157894 26.8416263487744 23.296188505783853 80-81 22.334936244996012 27.74947584949811 26.92893921465985 22.98664869084603 82-83 22.294162487047515 27.541835089479022 27.048535237209375 23.115467186264084 84-85 22.34527579068716 27.833967202859572 26.99049972562187 22.830257280831397 86-87 22.647128006234052 27.78089821747961 27.07539101499188 22.49658276129446 88-89 22.497017838003817 27.854385628202976 27.263568895114897 22.38502763867831 90-91 22.48591810560838 27.55036670282364 27.23286220498703 22.73085298658095 92-93 22.47309376453904 27.26603545702777 27.330781371822148 22.93008940661104 94-95 21.906270576389893 27.590058320518317 27.837602920056113 22.666068183035676 96-97 22.03461247729177 27.537404968998352 27.94681166962719 22.481170884082687 98-99 23.165388230916857 29.479114805379915 28.234465013175154 19.121031950528078 100 22.136249958683962 30.52982801068469 22.020051784536435 25.31387024609491 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4819.0 1 4950.0 2 8156.5 3 11536.0 4 15238.0 5 26505.0 6 35806.0 7 41112.0 8 43097.0 9 39374.5 10 32838.5 11 26022.0 12 26898.5 13 37023.0 14 64009.0 15 104282.5 16 137248.0 17 154414.0 18 156417.0 19 145730.0 20 128221.5 21 111695.5 22 105011.0 23 115186.5 24 142777.5 25 186565.5 26 244912.5 27 310736.5 28 380438.0 29 455813.5 30 528213.0 31 598134.0 32 672618.0 33 745634.0 34 821984.5 35 894837.0 36 965630.0 37 1036677.5 38 1084539.0 39 1117166.5 40 1160022.0 41 1196363.5 42 1214474.0 43 1234467.0 44 1258513.0 45 1287541.0 46 1304397.0 47 1304284.5 48 1298188.5 49 1274589.0 50 1244854.0 51 1209031.0 52 1154004.0 53 1090703.5 54 1026208.0 55 948503.5 56 865311.5 57 779145.0 58 692320.5 59 606466.0 60 505791.0 61 406265.0 62 317860.0 63 241300.5 64 177979.0 65 128858.0 66 94670.5 67 70767.0 68 52871.5 69 38356.0 70 28040.5 71 20459.0 72 14525.0 73 10047.5 74 6903.5 75 4798.0 76 3220.5 77 2129.5 78 1434.5 79 1003.5 80 706.5 81 500.5 82 378.0 83 278.5 84 204.5 85 153.5 86 122.0 87 96.0 88 64.0 89 39.0 90 24.5 91 18.5 92 14.5 93 9.5 94 5.0 95 2.5 96 3.0 97 3.5 98 4.5 99 7.0 100 14.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06673733827951578 6 0.0 7 0.0 8 2.4290771748960478E-4 9 8.439486082010629E-4 10-11 4.671302259415477E-6 12-13 3.7370418075323815E-4 14-15 0.006158333478662737 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.013912840028315292 24-25 0.0 26-27 7.789532199176406E-6 28-29 0.00281323413916516 30-31 0.01387806571713407 32-33 0.0 34-35 3.288833330227213E-5 36-37 6.439774156177936E-5 38-39 6.776681307240105E-5 40-41 0.0 42-43 0.005038324766881598 44-45 0.021607633569393953 46-47 0.0 48-49 0.0028243870331740527 50-51 3.079827540797517E-4 52-53 0.0 54-55 1.1505263732119855E-5 56-57 0.015215285681670956 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 1.6912288912225595E-5 68-69 0.015753215935000068 70-71 0.023249516937016136 72-73 0.0 74-75 0.013189129391017799 76-77 0.0 78-79 0.017496279245302306 80-81 1.0387186309659789E-4 82-83 0.014319394584239397 84-85 0.0 86-87 0.015190939048187415 88-89 0.03075785037601602 90-91 2.250394620761717E-5 92-93 1.8008639521593478E-4 94-95 0.01410753399251436 96-97 1.947052326330331E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 513.0 20-21 2372.0 22-23 4639.0 24-25 6776.0 26-27 11377.0 28-29 22619.0 30-31 52019.0 32-33 64998.0 34-35 84872.0 36-37 125206.0 38-39 101175.0 40-41 169865.0 42-43 193604.0 44-45 244481.0 46-47 239192.0 48-49 216051.0 50-51 115702.0 52-53 27858.0 54-55 27315.0 56-57 26202.0 58-59 119807.0 60-61 218948.0 62-63 204933.0 64-65 210339.0 66-67 227607.0 68-69 238428.0 70-71 245345.0 72-73 224711.0 74-75 220023.0 76-77 230800.0 78-79 249173.0 80-81 259657.0 82-83 246777.0 84-85 236990.0 86-87 243494.0 88-89 263588.0 90-91 285471.0 92-93 288561.0 94-95 334344.0 96-97 1067057.0 98-99 2157888.0 100-101 2.2600183E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 75.16620396360157 #Duplication Level Percentage of deduplicated Percentage of total 1 84.49879009845678 63.5145329121816 2 9.561074834096349 14.373394021818884 3 2.8221726609257134 6.363960175549272 4 1.2131768699525245 3.6475960020310083 5 0.6572786139103597 2.4702569177049716 6 0.39427549615725227 1.7781715417203736 7 0.2292140361770396 1.2060404296222595 8 0.15478845618467588 0.9307888535030683 9 0.10457446382863404 0.7074418929774643 >10 0.3544747824612322 4.098205764601563 >50 0.0068281250428608034 0.35161812465048964 >100 0.0032282490454599326 0.42372915234066466 >500 5.6124638879756885E-5 0.0308504279429015 >1k 6.718912218560159E-5 0.10341378335536244 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.294142560670874E-5 0.0 9.342604518830954E-6 0.0 3 0.0 5.6055627112985724E-5 0.0 9.342604518830954E-6 0.0 4 0.0 1.8062368736406512E-4 0.0 1.2456806025107937E-5 0.0 5 0.0 1.8685209037661908E-4 0.0 1.5571007531384923E-5 0.0 6 8.408344066947858E-5 1.8685209037661908E-4 0.0 1.5571007531384923E-5 6.228403012553969E-6 7 8.408344066947858E-5 1.8996629188289607E-4 0.0 1.5571007531384923E-5 6.228403012553969E-6 8 8.408344066947858E-5 2.05537299414281E-4 0.0 1.8685209037661907E-5 1.2456806025107937E-5 9 8.408344066947858E-5 3.6747577774068417E-4 0.0 2.179941054393889E-5 1.5571007531384923E-5 10-11 9.342604518830952E-5 3.6747577774068417E-4 0.0 3.4256216569046834E-5 1.5571007531384923E-5 12-13 1.0588285121341747E-4 3.6747577774068417E-4 0.0 3.737041807532382E-5 1.7128108284523413E-5 14-15 1.0899705271969447E-4 5.574420696235802E-4 0.0 4.204172033473929E-5 2.179941054393889E-5 16-17 1.7906658661092663E-4 5.792414801675191E-4 0.0 4.359882108787778E-5 2.8027813556492862E-5 18-19 1.8062368736406512E-4 6.446397117993359E-4 0.0 4.9827224100431757E-5 3.7370418075323814E-5 20-21 1.821807881172036E-4 7.05366641171737E-4 0.0 5.916982861926271E-5 3.7370418075323814E-5 22-23 1.8996629188289607E-4 8.190349961508469E-4 0.0 7.474083615064764E-5 4.671302259415477E-5 24-25 2.008659971548655E-4 9.218036458579874E-4 0.0 9.031184368203256E-5 5.9169828619262705E-5 26-27 2.05537299414281E-4 9.731879707115577E-4 0.0 1.3391066476991034E-4 5.9169828619262705E-5 28-29 2.1020860167369647E-4 9.872018774898042E-4 0.0 4.0796039732228495E-4 5.9169828619262705E-5 30-31 2.1332280317997343E-4 0.001141354852050515 0.0 0.001502602226778645 5.9169828619262705E-5 32-33 2.179941054393889E-4 0.0011460261543099304 0.0 0.0038039971399173363 6.228403012553969E-5 34-35 2.2733670995821986E-4 0.0013468921514647957 0.0 0.006440168714980804 6.851243313809367E-5 36-37 2.3356511297077385E-4 0.0015524294508790768 0.0 0.012654557820756526 6.851243313809367E-5 38-39 2.3356511297077385E-4 0.001591356969707539 0.0 0.12236320558463527 7.006953389123216E-5 40-41 2.5225032200843574E-4 0.0017439528435151113 0.0 0.2371277594939547 7.162663464437065E-5 42-43 2.5692162426785124E-4 0.0018140223774063434 0.0 0.2526442684989798 8.09692391632016E-5 44-45 2.678213295398207E-4 0.0020024315685361013 0.0 0.2726763696881065 9.186894443517104E-5 46-47 2.7716393405865164E-4 0.0021176570242683497 0.0 0.2926555294516265 1.01211548954002E-4 48-49 2.802781355649286E-4 0.002120771225774627 0.0 0.313259086617155 1.0899705271969445E-4 50-51 3.00520445355729E-4 0.0023683502455236465 0.0 0.3348514027609265 1.1211125422597144E-4 52-53 3.1142015062769843E-4 0.002382364152301893 0.0 0.7204020060440424 1.2612516100421787E-4 54-55 3.129772513808369E-4 0.0023963780590801394 0.0 1.2140294155017477 1.3858196702932582E-4 56-57 3.176485536402524E-4 0.0024228487718834938 0.0 1.751581080104737 1.416961685356028E-4 58-59 3.176485536402524E-4 0.0024306342756491863 0.0 2.320956769900371 1.4481037004187978E-4 60-61 3.3789086343105287E-4 0.0024680046937245103 0.0 2.4722991776016663 1.4636747079501826E-4 62-63 3.9238938979090006E-4 0.0025302887238500497 0.0 2.4782255030681113 1.5259587380757225E-4 64-65 4.0017489355659254E-4 0.002868179587281103 0.0 2.483695598013887 1.5259587380757225E-4 66-67 4.4688791615074726E-4 0.002897764501590734 0.0 2.488721919245018 1.5259587380757225E-4 68-69 4.5934472217585523E-4 0.0029834050430133513 0.0 2.493481976247362 1.5259587380757225E-4 70-71 4.7647283046037866E-4 0.0030472461738920292 0.0 2.497413655649037 1.619384783264032E-4 72-73 5.263000545608104E-4 0.0030628171814234143 0.0 2.500395503591297 2.02423097908004E-4 74-75 5.294142560670874E-4 0.0031515719243523084 0.0 2.5026984556051888 2.02423097908004E-4 76-77 5.434281628453339E-4 0.0033321956117163733 0.0 2.5051104046718002 2.05537299414281E-4 78-79 5.589991703767187E-4 0.0034271787576578214 0.0 2.506750031764855 2.05537299414281E-4 80-81 5.621133718829957E-4 0.00342873585841096 0.0 2.5073214877412573 2.1020860167369647E-4 82-83 5.683417748955496E-4 0.0034302929591640986 0.0 2.507712320030295 2.2889381071135838E-4 84-85 5.730130771549652E-4 0.0034427497651892064 0.0 2.5078384451912994 2.3045091146449686E-4 86-87 5.823556816737961E-4 0.003508147996821023 0.0 2.5078898295161527 2.3045091146449686E-4 88 5.948124876989041E-4 0.0037339276060261045 0.0 2.5078976150199184 2.3356511297077385E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 38665 0.0 51.018013 1 GTATCAA 70140 0.0 39.08007 1 ATCTCGT 26080 0.0 37.655746 94 TCAACGC 85605 0.0 31.304337 4 ATCAACG 86040 0.0 31.151157 3 CAACGCA 87260 0.0 30.6956 5 AACGCAG 90275 0.0 29.772905 6 TATCAAC 91335 0.0 29.63734 2 TATCTCG 31225 0.0 29.378315 94 ACGCAGA 104000 0.0 25.806072 7 CGCAGAG 105495 0.0 25.423813 8 GTACATG 102295 0.0 23.388536 1 TACATGG 101825 0.0 22.997702 2 TATGCCG 14810 0.0 22.772831 86-87 TCGTATG 15795 0.0 22.157501 84-85 ACATGGG 103005 0.0 22.10109 3 CGCTATC 45580 0.0 21.818972 94 GCCGTCT 16545 0.0 21.69261 90-91 TCTCGTA 16030 0.0 21.386719 82-83 CTCGTAT 15510 0.0 21.262018 82-83 >>END_MODULE