##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139915_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 34552957 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73524072049752 34.0 31.0 34.0 31.0 34.0 2 32.7883712239158 34.0 31.0 34.0 31.0 34.0 3 32.87714646245761 34.0 31.0 34.0 31.0 34.0 4 36.29903790868029 37.0 37.0 37.0 35.0 37.0 5 36.24269685514904 37.0 37.0 37.0 35.0 37.0 6 36.310971793239 37.0 37.0 37.0 35.0 37.0 7 36.28385941035379 37.0 37.0 37.0 35.0 37.0 8 36.28991877598204 37.0 37.0 37.0 35.0 37.0 9 38.078708169607594 39.0 39.0 39.0 35.0 39.0 10-11 38.055035492331385 39.0 39.0 39.0 35.0 39.0 12-13 38.04464975313111 39.0 39.0 39.0 35.0 39.0 14-15 39.54297088090029 41.0 40.0 41.0 37.0 41.0 16-17 39.55937778349911 41.0 40.0 41.0 37.0 41.0 18-19 39.60460619911633 41.0 40.0 41.0 37.0 41.0 20-21 39.62065337098838 41.0 40.0 41.0 37.0 41.0 22-23 39.57873564760662 41.0 40.0 41.0 37.0 41.0 24-25 39.55429256661601 41.0 40.0 41.0 36.0 41.0 26-27 39.48119586146241 41.0 39.0 41.0 36.0 41.0 28-29 39.42930083252277 41.0 39.0 41.0 36.0 41.0 30-31 39.352056583040465 41.0 39.0 41.0 36.0 41.0 32-33 39.27783399918087 41.0 39.0 41.0 35.0 41.0 34-35 39.22714531844289 41.0 39.0 41.0 35.0 41.0 36-37 39.18263004904657 41.0 39.0 41.0 35.0 41.0 38-39 39.13973884888087 41.0 39.0 41.0 35.0 41.0 40-41 39.10330053331294 41.0 39.0 41.0 35.0 41.0 42-43 39.03139408331842 41.0 39.0 41.0 35.0 41.0 44-45 38.65610361218741 40.5 38.5 41.0 34.5 41.0 46-47 38.7141796202357 40.0 38.0 41.0 34.5 41.0 48-49 38.79852044657769 40.0 38.0 41.0 35.0 41.0 50-51 38.76279385606078 40.0 38.0 41.0 35.0 41.0 52-53 38.67183952749862 40.0 38.0 41.0 34.5 41.0 54-55 38.55418454228918 40.0 38.0 41.0 34.0 41.0 56-57 38.40057040872733 40.0 37.5 41.0 34.0 41.0 58-59 38.24885247472453 40.0 37.0 41.0 34.0 41.0 60-61 38.06818421781878 40.0 36.5 41.0 34.0 41.0 62-63 37.84349549505821 39.0 36.0 41.0 33.5 41.0 64-65 37.59709629720054 39.0 35.5 41.0 33.0 41.0 66-67 37.337308929173325 39.0 35.0 41.0 33.0 41.0 68-69 36.97671196794016 38.0 35.0 40.0 32.5 41.0 70-71 36.668636555571524 37.0 35.0 40.0 32.0 41.0 72-73 36.386762350393475 37.0 35.0 39.5 32.0 41.0 74-75 36.0521575589123 36.0 35.0 39.0 32.0 41.0 76-77 35.717045875501285 36.0 35.0 39.0 32.0 40.5 78-79 35.38344771171897 35.5 35.0 37.5 31.5 39.5 80-81 35.072726451942955 35.0 34.0 37.0 31.0 39.0 82-83 34.78262694235384 35.0 34.0 37.0 31.0 39.0 84-85 34.52460289740722 35.0 34.0 36.0 31.0 37.5 86-87 34.30297919495014 35.0 34.0 36.0 31.0 37.0 88-89 34.24893782541412 35.0 34.0 36.0 31.0 37.0 90-91 34.21494999618308 35.0 34.0 35.0 31.0 36.5 92-93 34.133965670958546 35.0 34.0 35.0 31.0 36.0 94-95 34.174934906893206 35.0 34.0 35.0 32.0 36.0 96-97 34.22134959516494 35.0 34.0 35.0 32.0 36.0 98-99 34.32087508939968 35.0 35.0 35.0 32.0 36.0 100 34.1039169917127 35.0 34.0 35.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 32.0 20 108.0 21 535.0 22 2581.0 23 8947.0 24 24491.0 25 53141.0 26 97923.0 27 158933.0 28 231914.0 29 316014.0 30 410073.0 31 519534.0 32 660701.0 33 852116.0 34 1181830.0 35 1730918.0 36 2855430.0 37 6314282.0 38 1.0854392E7 39 7717796.0 40 561261.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.43680669645727 20.50852840178049 13.990903875462815 24.063761026299428 2 14.19357828043487 21.75672258672391 41.64465576708818 22.405043365753038 3 17.264615008203204 27.68924234183488 30.968324939599235 24.077817710362677 4 11.777706897849583 18.96044092550458 40.1364635738701 29.125388602775732 5 12.37253563094468 38.76154575013355 36.14271352546137 12.723205093460404 6 28.087306681161905 39.55281453914349 19.692323293777722 12.667555485916878 7 25.16813828697787 33.35057546594348 24.44286027386889 17.038425973209762 8 24.004581035310277 36.94650357446243 21.8073956654506 17.241519724776698 9 25.707910431506527 16.459711429873046 21.43149636521272 36.40088177340771 10-11 23.57139966135168 26.997579903044183 29.78205959203865 19.64896084356549 12-13 24.813429839110956 24.73778188691348 29.625629098453587 20.823159175521972 14-15 21.926251666096107 25.811695453434574 27.28719410139751 24.974858779071806 16-17 21.304626692297276 28.914040555197634 27.814095621396458 21.967237131108632 18-19 21.35793327326515 28.10068759093469 29.57874632842567 20.96263280737449 20-21 22.36170647513913 27.256407718406827 29.30627561198888 21.07561019446516 22-23 22.05420460753595 27.21195496516453 29.19895120802533 21.534889219274184 24-25 21.684134484530627 27.366837608084698 29.301113149357327 21.647914758027344 26-27 21.685358804576556 27.46308955410121 29.205211228528267 21.646340412793965 28-29 21.638342196782908 27.462175952013613 29.252046274799326 21.647435576404156 30-31 21.903632709747413 27.349560125519545 29.118540732775166 21.628266431957872 32-33 21.733448446433037 27.54966533685628 29.054841234344615 21.662044982366073 34-35 21.869361501634287 27.53819186591746 29.089437583408078 21.50300904904017 36-37 21.853185846943408 27.4623907791079 28.98088825209581 21.703535121852884 38-39 21.734666491504683 27.559667096659567 29.042556547905118 21.66310986393063 40-41 21.95430046640691 27.410991013860365 28.917328818710352 21.71737970102238 42-43 21.838999133943027 27.52031682085876 28.75538652990776 21.885297515290453 44-45 22.106535379289763 27.6179798815334 28.487702528628407 21.787782210548436 46-47 22.077463839386397 27.682039329610035 28.170776458517093 22.06972037248648 48-49 22.02623748410102 27.78387080219747 28.117383369667092 22.072508344034414 50-51 22.02153881576909 27.921008737754814 27.958294696094356 22.099157750381735 52-53 22.15056385320204 27.8211747473593 27.903128775916862 22.125132623521797 54-55 22.0762006793976 27.753491110362898 27.982298364553344 22.188009845686153 56-57 22.10480538994674 27.815631258743995 27.968243965997104 22.111319385312164 58-59 22.0914175425356 27.867558740865395 27.943657034092784 22.09736668250622 60-61 22.163275639275412 27.84579759215816 27.934430738238973 22.056496030327455 62-63 22.124495082484685 27.91648588957814 27.872896444457133 22.086122583480037 64-65 22.10112364383999 27.871668947004842 27.84779661867121 22.179410790483956 66-67 22.141824285112065 27.896968524232168 27.76422927693526 22.196977913720502 68-69 22.16370301717026 27.872735790396785 27.788289644500285 22.175271547932667 70-71 22.16230735403799 27.643529195903216 27.869187712362887 22.324975737695908 72-73 22.142744864926044 27.669571951057936 27.84757717153954 22.340106012476483 74-75 22.032800897385922 27.83338580846942 27.839161128265662 22.294652165878997 76-77 22.163810693997902 27.789957377619583 27.732500384952264 22.313731543430247 78-79 22.11652854082765 27.806880542482347 27.722025662091234 22.354565254598768 80-81 22.14814950926566 27.822538476130877 27.721248648022044 22.308063366581422 82-83 22.182681288491636 27.736389757566137 27.838666196047523 22.2422627578947 84-85 22.239255266369405 27.773816791008304 27.748792349990286 22.238135592632005 86-87 22.080852035988595 27.82899530128481 27.867085899898527 22.22306676282807 88-89 22.14486507872848 27.775366305450543 27.792812059033565 22.28695655678741 90-91 22.209651483219055 27.769930776400614 27.794885690473514 22.225532049906818 92-93 22.229327929381775 27.738446679914023 27.789160709726847 22.24306468097736 94-95 22.0477956237185 27.836340052820773 27.853865669847554 22.261998653613173 96-97 22.16675187751944 27.9402318282684 27.87402137229516 22.018994921917002 98-99 23.234945557176832 29.88801868871721 28.073531273468866 18.80350448063709 100 22.15906619212123 30.793634862059633 21.972874753814573 25.074424192004564 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 11255.0 1 10827.5 2 12292.5 3 14371.5 4 18446.0 5 31586.0 6 42751.0 7 49764.0 8 53226.5 9 49165.0 10 40127.0 11 30655.5 12 31528.5 13 44518.5 14 77878.5 15 127129.5 16 168013.0 17 190226.5 18 194170.5 19 182203.0 20 161872.0 21 143033.0 22 136171.0 23 149359.0 24 182561.0 25 235137.0 26 305258.5 27 382197.0 28 462397.5 29 551508.5 30 636465.5 31 712986.5 32 797011.5 33 878716.5 34 955221.5 35 1027780.0 36 1100070.5 37 1168771.0 38 1217260.5 39 1249403.5 40 1280134.0 41 1307193.0 42 1324186.0 43 1347397.0 44 1370684.5 45 1390040.0 46 1397454.0 47 1393212.5 48 1384226.0 49 1355384.0 50 1321606.5 51 1282299.5 52 1224493.0 53 1156917.5 54 1089848.0 55 1015152.0 56 935235.5 57 851592.5 58 760669.0 59 667560.5 60 561327.0 61 452024.5 62 354298.0 63 272435.5 64 204235.5 65 149096.0 66 109028.0 67 81772.0 68 61579.5 69 44391.5 70 31773.0 71 23178.0 72 16716.5 73 11829.5 74 8527.0 75 6035.5 76 4176.5 77 2835.5 78 1947.0 79 1400.5 80 990.0 81 702.5 82 526.0 83 372.5 84 262.0 85 198.0 86 149.0 87 104.0 88 68.0 89 42.5 90 30.5 91 27.0 92 20.0 93 14.0 94 8.5 95 6.0 96 7.5 97 6.5 98 6.5 99 7.5 100 10.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06575124670227211 6 0.0 7 0.0 8 1.9969347341242024E-4 9 9.145382260626782E-4 10-11 7.235270775812328E-6 12-13 3.993869468248405E-4 14-15 0.006161556592681777 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.014094866163174525 24-25 0.0 26-27 1.7374967345920743E-5 28-29 0.0027929817178920712 30-31 0.013743508541531824 32-33 0.0 34-35 4.369868463463355E-5 36-37 9.499953990992057E-5 38-39 8.078517431655999E-5 40-41 0.0 42-43 0.004931825396485447 44-45 0.021374384142968144 46-47 3.0259736872221664E-6 48-49 0.0027658258586584225 50-51 3.324008514817145E-4 52-53 0.0 54-55 1.5605776852840723E-5 56-57 0.015269315959797792 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 2.782312310367004E-5 68-69 0.016039783418341377 70-71 0.023474083721542964 72-73 0.0 74-75 0.013415678152688609 76-77 0.0 78-79 0.017806901524500204 80-81 9.074108505920987E-5 82-83 0.014659148700659074 84-85 0.0 86-87 0.015535415842199423 88-89 0.03129959986061559 90-91 3.486603441945557E-5 92-93 1.3181620187469373E-4 94-95 0.01426501224842579 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 771.0 20-21 2836.0 22-23 5746.0 24-25 8236.0 26-27 14530.0 28-29 27866.0 30-31 63919.0 32-33 79484.0 34-35 104154.0 36-37 155777.0 38-39 203038.0 40-41 211194.0 42-43 244497.0 44-45 306970.0 46-47 297969.0 48-49 272315.0 50-51 239653.0 52-53 218586.0 54-55 229410.0 56-57 244190.0 58-59 256213.0 60-61 261061.0 62-63 243239.0 64-65 245922.0 66-67 266057.0 68-69 277698.0 70-71 283568.0 72-73 260254.0 74-75 251699.0 76-77 264935.0 78-79 284585.0 80-81 294620.0 82-83 277583.0 84-85 264291.0 86-87 270335.0 88-89 293742.0 90-91 315354.0 92-93 316951.0 94-95 359015.0 96-97 1056266.0 98-99 2084021.0 100-101 2.3194407E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.13204190807348 #Duplication Level Percentage of deduplicated Percentage of total 1 86.01319939551877 67.20386899818152 2 8.980050828484853 14.032594153356168 3 2.493240876467345 5.844060019412053 4 1.0554920656586875 3.2987100123073447 5 0.49871856949865273 1.9482950086201594 6 0.2921978333187511 1.3698008014985357 7 0.17954955802963105 0.9820001514783041 8 0.12068450818661103 0.7543461641033222 9 0.0790303998472262 0.5557325861587752 >10 0.27946272665352667 3.3551338213485145 >50 0.0062296710802921375 0.321801626951635 >100 0.002080752902034928 0.27090309305523763 >500 3.6038968680226347E-5 0.02030665496765509 >1k 2.6775384871788746E-5 0.042446908560706084 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.788216620649862E-6 0.0 2 2.894108310324931E-6 2.3152866482599448E-5 0.0 1.7364649861949588E-5 0.0 3 2.894108310324931E-6 2.3152866482599448E-5 0.0 2.0258758172274516E-5 0.0 4 2.894108310324931E-6 5.498805789617369E-5 0.0 4.6305732965198896E-5 0.0 5 2.894108310324931E-6 5.788216620649862E-5 0.0 4.6305732965198896E-5 0.0 6 7.814092437877315E-5 5.788216620649862E-5 0.0 5.788216620649862E-5 2.894108310324931E-6 7 7.814092437877315E-5 5.788216620649862E-5 0.0 6.0776274516823555E-5 2.894108310324931E-6 8 7.814092437877315E-5 6.945859944779835E-5 0.0 6.656449113747342E-5 8.682324930974794E-6 9 7.814092437877315E-5 1.4181130720592163E-4 0.0 9.261146593039779E-5 1.7364649861949588E-5 10-11 7.814092437877315E-5 1.4181130720592163E-4 0.0 1.4325836136108407E-4 1.7364649861949588E-5 12-13 7.814092437877315E-5 1.4181130720592163E-4 0.0 1.7075239030917092E-4 1.881170401711205E-5 14-15 7.95879785339356E-5 2.0692874418823257E-4 0.0 1.9824641925725778E-4 2.4599920637761914E-5 16-17 1.2444665734397204E-4 2.185051774295323E-4 0.0 2.315286648259945E-4 3.183519141357424E-5 18-19 1.302348739646219E-4 2.488933146879441E-4 0.0 2.51787422998269E-4 4.051751634454903E-5 20-21 1.3747014474043423E-4 2.8796377687733066E-4 0.0 3.0098726427379286E-4 4.919984127552383E-5 22-23 1.4904657798173396E-4 3.472929972389917E-4 0.0 3.35716563997692E-4 5.788216620649862E-5 24-25 1.5338774044722136E-4 3.9215167604902815E-4 0.0 3.7044586372159116E-4 6.367038282714849E-5 26-27 1.5338774044722136E-4 4.167515966867901E-4 0.0 4.167515966867901E-4 6.656449113747342E-5 28-29 1.5338774044722136E-4 4.167515966867901E-4 0.0 6.511743698231094E-4 6.656449113747342E-5 30-31 1.5483479460238383E-4 4.5148089641068926E-4 0.0 0.0015367715127825384 6.945859944779835E-5 32-33 1.6062301122303366E-4 4.543750047210142E-4 0.0 0.003558306167544503 7.524681606844821E-5 34-35 1.7364649861949586E-4 5.310688749446249E-4 0.0 0.006108015588940767 8.3929140999423E-5 36-37 1.765406069298208E-4 6.12103907633723E-4 0.0 0.01041734286301459 8.3929140999423E-5 38-39 1.7943471524014572E-4 6.439390990472971E-4 0.0 0.021464154283524852 9.261146593039779E-5 40-41 1.7943471524014572E-4 6.974801027883084E-4 0.0 0.03393486699271498 9.261146593039779E-5 42-43 1.7943471524014572E-4 7.235270775812327E-4 0.0 0.04196312344555633 9.261146593039779E-5 44-45 1.8377587770563312E-4 8.146914893564681E-4 0.0 0.05113165857266572 9.695262839588519E-5 46-47 1.8811704017112051E-4 8.855971429594289E-4 0.0 0.06061420445144536 9.984673670621012E-5 48-49 1.8956409432628298E-4 8.870441971145914E-4 0.0 0.07002873878493236 1.0129379086137259E-4 50-51 2.054816900330701E-4 0.0010158320169240509 0.0 0.07966033124169372 1.0418789917169752E-4 52-53 2.1126990665371997E-4 0.0010216202335447007 0.0 0.09887142220563062 1.0708200748202245E-4 54-55 2.1271696080888243E-4 0.0010404319375618128 0.0 0.11939643834245503 1.1142316994750985E-4 56-57 2.141640149640449E-4 0.00105056131664795 0.0 0.14021375941862227 1.1287022410267231E-4 58-59 2.141640149640449E-4 0.0010563495332686 0.0 0.15582023848204946 1.1287022410267231E-4 60-61 2.2429339405018216E-4 0.0010795023997511994 0.0 0.16463569239529918 1.1721138656815971E-4 62-63 2.662579645498937E-4 0.0010954199954579865 0.0 0.17425570841881927 1.2155254903364711E-4 64-65 2.7204618117054354E-4 0.0012271019235777709 0.0 0.1802841360292261 1.2155254903364711E-4 66-67 2.95199047653143E-4 0.0012444665734397205 0.0 0.18573084786925761 1.258937114991345E-4 68-69 3.0098726427379286E-4 0.0012661723857671575 0.0 0.19128753582508148 1.302348739646219E-4 70-71 3.1401075167025505E-4 0.0012980075771807315 0.0 0.1963840605595637 1.345760364301093E-4 72-73 3.5018710554931664E-4 0.0013168192811978435 0.0 0.20032149491576076 1.4470541551624656E-4 74-75 3.530812138596416E-4 0.001358783851697555 0.0 0.20319968563037888 1.475995238265715E-4 76-77 3.559753221699665E-4 0.0014282424511453534 0.0 0.2059679002292047 1.5049363213689643E-4 78-79 3.5886943048029144E-4 0.0014528423717831153 0.0 0.2077058122695548 1.5049363213689643E-4 80-81 3.5886943048029144E-4 0.0014528423717831153 0.0 0.20834541020613662 1.591759570678712E-4 82-83 3.603164846354539E-4 0.0014571835342486027 0.0 0.20871296196154787 1.765406069298208E-4 84-85 3.6176353879061637E-4 0.00146731291333474 0.0 0.2088634555936848 1.7798766108498325E-4 86-87 3.6176353879061637E-4 0.0015034892672138016 0.0 0.20891989070573613 1.8088176939530818E-4 88 3.7044586372159116E-4 0.0016120183288509866 0.0 0.20892278481404644 1.8232882355047065E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 45655 0.0 52.49916 1 GTATCAA 84160 0.0 38.594234 1 TCAACGC 103690 0.0 30.659714 4 ATCAACG 103940 0.0 30.573599 3 CAACGCA 105330 0.0 30.16606 5 AACGCAG 108435 0.0 29.370941 6 TATCAAC 109670 0.0 29.284744 2 ACGCAGA 123725 0.0 25.72068 7 CGCAGAG 125305 0.0 25.386177 8 GTACATG 116795 0.0 22.096216 1 TACATGG 117285 0.0 21.682302 2 GCAGAGT 148815 0.0 21.357803 9 ACATGGG 118315 0.0 20.943047 3 GAGTACT 83600 0.0 19.647198 12-13 AGAGTAC 134685 0.0 19.39171 10-11 CATGGGG 81775 0.0 18.984735 4 CAGAGTA 144775 0.0 18.93091 10-11 AGTACTT 91670 0.0 17.265661 12-13 GTACTTT 95135 0.0 17.22941 14-15 GTGGTAT 20510 0.0 16.196068 1 >>END_MODULE