##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139914_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 35578963 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73842461344363 34.0 31.0 34.0 31.0 34.0 2 32.79533372009746 34.0 31.0 34.0 31.0 34.0 3 32.88180529601158 34.0 31.0 34.0 31.0 34.0 4 36.30286883291118 37.0 37.0 37.0 35.0 37.0 5 36.24730788246976 37.0 37.0 37.0 35.0 37.0 6 36.313660350359285 37.0 37.0 37.0 35.0 37.0 7 36.286657792696204 37.0 37.0 37.0 35.0 37.0 8 36.293808619436156 37.0 37.0 37.0 35.0 37.0 9 38.08207510151434 39.0 39.0 39.0 35.0 39.0 10-11 38.0590460997978 39.0 39.0 39.0 35.0 39.0 12-13 38.04817588415941 39.0 39.0 39.0 35.0 39.0 14-15 39.54758834595601 41.0 40.0 41.0 37.0 41.0 16-17 39.56366381448498 41.0 40.0 41.0 37.0 41.0 18-19 39.60926236101935 41.0 40.0 41.0 37.0 41.0 20-21 39.62496770507625 41.0 40.0 41.0 37.0 41.0 22-23 39.58364328076637 41.0 40.0 41.0 37.0 41.0 24-25 39.55955899714765 41.0 40.0 41.0 36.0 41.0 26-27 39.487253002632215 41.0 39.0 41.0 36.0 41.0 28-29 39.434508662678255 41.0 39.0 41.0 36.0 41.0 30-31 39.35625803698567 41.0 39.0 41.0 36.0 41.0 32-33 39.281301655751605 41.0 39.0 41.0 35.0 41.0 34-35 39.2316388879872 41.0 39.0 41.0 35.0 41.0 36-37 39.18761107801872 41.0 39.0 41.0 35.0 41.0 38-39 39.14555591462869 41.0 39.0 41.0 35.0 41.0 40-41 39.111721649180126 41.0 39.0 41.0 35.0 41.0 42-43 39.04119251954418 41.0 39.0 41.0 35.0 41.0 44-45 38.664727322428455 40.5 38.5 41.0 34.5 41.0 46-47 38.7263649571518 40.0 38.0 41.0 34.5 41.0 48-49 38.81261218599904 40.0 38.0 41.0 35.0 41.0 50-51 38.779267990402126 40.0 38.0 41.0 35.0 41.0 52-53 38.691803737143246 40.0 38.0 41.0 35.0 41.0 54-55 38.57705550342715 40.0 38.0 41.0 34.0 41.0 56-57 38.42792563223466 40.0 37.5 41.0 34.0 41.0 58-59 38.28012000483783 40.0 37.0 41.0 34.0 41.0 60-61 38.10185013409601 40.0 37.0 41.0 34.0 41.0 62-63 37.878891787660585 39.5 36.0 41.0 33.5 41.0 64-65 37.63418543163044 39.0 36.0 41.0 33.0 41.0 66-67 37.375413710787214 39.0 35.0 41.0 33.0 41.0 68-69 37.01766745461224 38.0 35.0 40.5 32.5 41.0 70-71 36.710175178980464 37.0 35.0 40.0 32.0 41.0 72-73 36.42670966079605 37.0 35.0 39.5 32.0 41.0 74-75 36.08966906579275 36.5 35.0 39.0 32.0 41.0 76-77 35.7511435845269 36.0 35.0 39.0 32.0 40.5 78-79 35.413092886752054 35.5 35.0 37.5 31.5 39.5 80-81 35.09996700735226 35.0 34.0 37.0 31.0 39.0 82-83 34.80728031522839 35.0 34.0 37.0 31.0 39.0 84-85 34.54693929114603 35.0 34.0 36.0 31.0 37.5 86-87 34.32134133225357 35.0 34.0 36.0 31.0 37.0 88-89 34.264524017166224 35.0 34.0 36.0 31.0 37.0 90-91 34.22539734016219 35.0 34.0 35.0 31.0 36.5 92-93 34.14354680650059 35.0 34.0 35.0 31.0 36.0 94-95 34.18240265411103 35.0 34.0 35.0 32.0 36.0 96-97 34.22660575920844 35.0 34.0 35.0 32.0 36.0 98-99 34.32431324321893 35.0 35.0 35.0 32.0 36.0 100 34.10963150170931 35.0 34.0 35.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 27.0 20 101.0 21 543.0 22 2533.0 23 9024.0 24 24656.0 25 53990.0 26 99677.0 27 163388.0 28 238079.0 29 324381.0 30 421508.0 31 535214.0 32 680667.0 33 877905.0 34 1217001.0 35 1779466.0 36 2926626.0 37 6487478.0 38 1.1311465E7 39 7869748.0 40 555480.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.23172448842874 20.650773323550773 14.063169856861766 24.054332331158722 2 14.11775548376719 21.884499556662178 41.67180757910229 22.325937380468343 3 17.14229276440688 27.769016202074244 31.140865460300233 23.947825573218644 4 11.726260824409076 19.11104885209836 40.264540593833495 28.898149729659067 5 12.298265773308865 38.82655775582496 36.24327965078991 12.631896820076275 6 27.945257988547894 39.69767752927481 19.75365611414813 12.603408368029164 7 24.987945826301907 33.46570837379381 24.582251034129353 16.964094765774934 8 23.889611040076467 37.028904560356644 21.921286232586723 17.160198166980166 9 25.636914850383473 16.500243390299975 21.567191251766474 36.29565050755008 10-11 23.453503883938602 27.071046284909784 29.91772722087078 19.557722610280834 12-13 24.739260820800833 24.815213351129888 29.73505445370328 20.710471374365998 14-15 21.854503469006954 25.87212570725962 27.434833005553738 24.83853781817969 16-17 21.19538166415924 28.971154949063582 27.95538335392181 21.878080032855372 18-19 21.2492547913777 28.177735253273124 29.72811911353347 20.84489084181571 20-21 22.23540552208903 27.31538648776879 29.461487825005676 20.9877201651365 22-23 21.93733617042667 27.307462877573062 29.32520616260935 21.429994789390914 24-25 21.587391378771063 27.48339071516297 29.412411498362495 21.516806407703477 26-27 21.610725896702135 27.574668624424536 29.29266316192069 21.521942316952643 28-29 21.57298773977046 27.571943974763947 29.34498836223682 21.510079923228773 30-31 21.872944624734654 27.431317317478875 29.194444291874944 21.501293765911534 32-33 21.70745715396338 27.597643506778528 29.150862941378374 21.54403639787972 34-35 21.78244587961688 27.648208358712168 29.16527893372117 21.404066827949784 36-37 21.79617651119321 27.542109664274932 29.094228206878892 21.567485617652963 38-39 21.679120188552513 27.63588624691155 29.15363946049801 21.531354104037923 40-41 21.881239221555298 27.503455899434236 29.049663002085595 21.56564187692487 42-43 21.797376989990706 27.60852076502518 28.83643342158395 21.757668823400163 44-45 22.049783968219522 27.723252438694306 28.55457105686906 21.67239253621711 46-47 22.0311764236979 27.796066190224977 28.22456798575667 21.94818940032045 48-49 22.00562303165998 27.859676642472326 28.161593812368707 21.973106513498987 50-51 21.97331792132523 27.995497351464984 28.00833309311537 22.022851634094422 52-53 22.08278722094773 27.915964807193582 27.973278737806652 22.027969234052033 54-55 22.05754492779778 27.85389683712803 28.01402483352598 22.07453340154821 56-57 22.068378309954383 27.918578192011083 28.024563435454848 21.988480062579686 58-59 22.045988249997745 27.99101051451202 28.007048883994628 21.955952351495604 60-61 22.13241082668253 27.979290809710538 27.968680238376788 21.919618125230144 62-63 22.093557799662552 28.04426931337024 27.900255138088752 21.961917748878452 64-65 22.070680567258936 28.005201630173186 27.894394682963863 22.029723119604018 66-67 22.11993141534914 28.029295555089845 27.79242031287323 22.058352716687786 68-69 22.106680188993757 27.970954822297532 27.85011336453122 22.07225162417749 70-71 22.11357025309745 27.732854618475233 27.941823812572526 22.21175131585479 72-73 22.137875768864244 27.80474947711043 27.898712642273406 22.158662111751916 74-75 22.011418753903406 27.947903953828256 27.878645823552144 22.16203146871619 76-77 22.131790331696603 27.871572837785756 27.8200724630396 22.17656436747804 78-79 22.0790396837637 27.911174395253784 27.79995070122413 22.209835219758386 80-81 22.12368529886181 27.91483026739269 27.816236485193425 22.145247948552075 82-83 22.133115001651962 27.880470978397586 27.903795372788892 22.08261864716156 84-85 22.221170639540567 27.90225088187888 27.78164248093485 22.094935997645706 86-87 22.02507103223761 27.921288768786944 27.92640127660846 22.12723892236699 88-89 22.13864391723251 27.856919286931465 27.833387310888497 22.17104948494753 90-91 22.206789973472834 27.88334988936117 27.84754006466675 22.06232007249925 92-93 22.1826108264228 27.89022029368013 27.82403300060821 22.103135879288857 94-95 22.040791877564466 27.919120740005983 27.87704950642874 22.16303787600081 96-97 22.12602707637746 28.036227532304064 27.933298746432524 21.90444664488595 98-99 23.182465670405776 29.999837248754236 28.120845718144967 18.69685136269503 100 22.110565260857467 30.94661610740471 21.99687616164231 24.945942470095513 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 6183.0 1 6293.0 2 10445.5 3 14846.5 4 19421.0 5 33379.5 6 45257.0 7 52482.0 8 55907.5 9 51742.5 10 42668.0 11 32951.0 12 33674.5 13 47037.0 14 82330.5 15 135128.5 16 178603.5 17 201823.5 18 205618.5 19 192191.0 20 169639.5 21 149140.5 22 140709.0 23 151880.0 24 186188.5 25 241292.5 26 312852.5 27 391558.0 28 474741.0 29 564977.0 30 649035.5 31 728934.0 32 819610.5 33 903899.5 34 982149.0 35 1059640.0 36 1136396.0 37 1211277.5 38 1263363.5 39 1295351.0 40 1328224.5 41 1356553.0 42 1372367.0 43 1389118.5 44 1411638.0 45 1436663.5 46 1441913.0 47 1435220.0 48 1422618.5 49 1386427.0 50 1345362.5 51 1296975.0 52 1231568.0 53 1160374.0 54 1086877.5 55 1004218.0 56 919907.0 57 833118.0 58 741931.0 59 649783.5 60 541978.0 61 436091.0 62 342994.5 63 262300.0 64 196383.0 65 142233.0 66 102517.0 67 76507.0 68 57725.5 69 41826.0 70 30010.0 71 21392.0 72 14989.0 73 10395.5 74 7239.5 75 4892.0 76 3327.0 77 2273.5 78 1534.5 79 1078.5 80 749.0 81 521.5 82 387.5 83 280.5 84 211.0 85 158.5 86 125.5 87 98.5 88 68.5 89 44.5 90 30.0 91 21.0 92 18.5 93 11.5 94 4.5 95 5.0 96 5.0 97 6.0 98 8.0 99 9.0 100 12.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0661036691822637 6 0.0 7 0.0 8 2.220413225646852E-4 9 8.600587937315654E-4 10-11 5.6212993054350685E-6 12-13 4.539199189138818E-4 14-15 0.006214346382158469 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.013969194265335843 24-25 0.0 26-27 2.249714071886998E-5 28-29 0.002819082034302489 30-31 0.01422355705773366 32-33 0.0 34-35 2.827658978162937E-5 36-37 6.0980419357522214E-5 38-39 5.983294129935437E-5 40-41 0.0 42-43 0.00495534976260647 44-45 0.021835627941800766 46-47 0.0 48-49 0.0028247484446394908 50-51 3.3003535347626313E-4 52-53 0.0 54-55 9.034018726767985E-6 56-57 0.014631620643502404 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 1.8860241055884308E-5 68-69 0.01569615016388194 70-71 0.022816336100370017 72-73 0.0 74-75 0.013186417775278167 76-77 0.0 78-79 0.016668552124938996 80-81 8.501037409931926E-5 82-83 0.01423363024818416 84-85 0.0 86-87 0.015081594149006356 88-89 0.029942864295752533 90-91 1.748014177234024E-5 92-93 1.520000681525887E-4 94-95 0.013531985042981975 96-97 1.8164116754655765E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 662.0 20-21 2500.0 22-23 5057.0 24-25 7867.0 26-27 13798.0 28-29 27141.0 30-31 59903.0 32-33 74848.0 34-35 97490.0 36-37 144832.0 38-39 192187.0 40-41 198322.0 42-43 233697.0 44-45 294084.0 46-47 282728.0 48-49 253106.0 50-51 225591.0 52-53 204660.0 54-55 216616.0 56-57 229698.0 58-59 237708.0 60-61 242340.0 62-63 226937.0 64-65 232616.0 66-67 251092.0 68-69 263029.0 70-71 270458.0 72-73 247852.0 74-75 243144.0 76-77 255314.0 78-79 275309.0 80-81 287454.0 82-83 272851.0 84-85 263662.0 86-87 269919.0 88-89 292623.0 90-91 313426.0 92-93 317075.0 94-95 365369.0 96-97 1096149.0 98-99 2182056.0 100-101 2.4407793E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.24883038167437 #Duplication Level Percentage of deduplicated Percentage of total 1 85.60060679377133 66.12546754780443 2 9.019546019079053 13.934987610950882 3 2.619786194752664 6.071262581841021 4 1.102116556138288 3.405488596238468 5 0.5783758659959922 2.233942958458921 6 0.34084264327871977 1.579781732248762 7 0.21347058893130952 1.1543247321081604 8 0.1237321422207362 0.764653061373669 9 0.08760465648792372 0.6090621524712422 >10 0.3063419842530642 3.5016390987576944 >50 0.005711028939165974 0.2925410392006498 >100 0.0017704185869914187 0.22673322542229898 >500 5.2182599082016535E-5 0.02823411848558436 >1k 4.292496578579504E-5 0.07188154463823601 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.810649652717534E-5 0.0 0.0 0.0 3 0.0 3.091714617989288E-5 0.0 0.0 0.0 4 0.0 7.307689097065589E-5 0.0 1.1242598610870137E-5 5.6212993054350685E-6 5 0.0 9.275143853967863E-5 0.0 1.405324826358767E-5 5.6212993054350685E-6 6 0.0 9.275143853967863E-5 0.0 1.405324826358767E-5 1.1242598610870137E-5 7 0.0 1.0118338749783124E-4 0.0 4.778104409619808E-5 1.1242598610870137E-5 8 8.431948958152602E-6 1.1804728541413643E-4 0.0 5.059169374891562E-5 1.405324826358767E-5 9 8.431948958152602E-6 1.8269222742663973E-4 0.0 7.588754062337342E-5 1.405324826358767E-5 10-11 8.431948958152602E-6 1.8550287707935726E-4 0.0 8.713013923424356E-5 1.405324826358767E-5 12-13 8.431948958152602E-6 1.9112417638479233E-4 0.0 9.83727378451137E-5 1.405324826358767E-5 14-15 9.83727378451137E-6 2.8528093975082973E-4 0.0 1.292898840250066E-4 2.6701171700816577E-5 16-17 1.1242598610870137E-5 2.951182135353411E-4 0.0 1.3350585850408286E-4 2.810649652717534E-5 18-19 1.2647923437228905E-5 3.246300348888752E-4 0.0 1.4193780746223547E-4 2.810649652717534E-5 20-21 1.6863897916305204E-5 3.696004293323558E-4 0.0 1.5458573089946438E-4 3.091714617989287E-5 22-23 2.529584687445781E-5 3.9630160103317234E-4 0.0 1.6863897916305205E-4 3.5133120658969175E-5 24-25 2.6701171700816577E-5 4.328400465185003E-4 0.0 2.1360937360653261E-4 3.653844548532794E-5 26-27 2.810649652717534E-5 4.52514594087523E-4 0.0 2.8387561492447094E-4 4.215974479076301E-5 28-29 2.810649652717534E-5 4.5391991891388173E-4 0.0 4.1035484929676E-4 4.215974479076301E-5 30-31 3.091714617989288E-5 4.974849885310036E-4 0.0 8.727067171687944E-4 4.215974479076301E-5 32-33 3.091714617989288E-5 4.988903133573623E-4 0.0 0.0018086530515237333 4.778104409619808E-5 34-35 3.091714617989288E-5 5.480766822799192E-4 0.0 0.0028935638174727015 5.059169374891562E-5 36-37 3.091714617989288E-5 6.085056498133462E-4 0.0 0.004640382576636649 5.059169374891562E-5 38-39 3.091714617989288E-5 6.33801496687804E-4 0.0 0.007651993679523487 5.480766822799192E-5 40-41 3.091714617989288E-5 6.829878656103609E-4 0.0 0.011260867833612801 6.323961718614453E-5 42-43 3.232247100625164E-5 7.096890373111774E-4 0.0 0.014656132614095582 6.605026683886205E-5 44-45 3.372779583261041E-5 7.799552786291158E-4 0.0 0.018371811454988164 6.886091649157958E-5 46-47 3.5133120658969175E-5 8.291416475516726E-4 0.0 0.022769072836664746 7.167156614429712E-5 48-49 3.934909513804548E-5 8.347629468571077E-4 0.0 0.02721973656174296 8.150883992880849E-5 50-51 3.934909513804548E-5 9.696741301875493E-4 0.0 0.032010488894799995 8.150883992880849E-5 52-53 3.934909513804548E-5 9.83727378451137E-4 0.0 0.03672254303758095 9.134611371331986E-5 54-55 3.934909513804548E-5 0.0010357243970264113 0.0 0.04136854691352303 1.0258871232419E-4 56-57 3.934909513804548E-5 0.0010596149190745105 0.0 0.04604125196116593 1.0539936197690754E-4 58-59 3.934909513804548E-5 0.0010778841418171742 0.0 0.050803897797695785 1.0680468680326631E-4 60-61 3.934909513804548E-5 0.0010835054411226096 0.0 0.055612919353495494 1.152366357614189E-4 62-63 3.934909513804548E-5 0.0011059906383443497 0.0 0.06018725166329328 1.2085793506685397E-4 64-65 3.934909513804548E-5 0.0012057687010158223 0.0 0.06459575564358074 1.2226325989321275E-4 66-67 3.934909513804548E-5 0.0012170112996266924 0.0 0.06879486622474072 1.2507390954593028E-4 68-69 3.934909513804548E-5 0.0012409018216747913 0.0 0.07306424304721866 1.2647923437228905E-4 70-71 3.934909513804548E-5 0.0012633870188965316 0.0 0.07697526203897512 1.292898840250066E-4 72-73 3.934909513804548E-5 0.001271818967854684 0.0 0.08006557133213804 1.5177508124674684E-4 74-75 3.934909513804548E-5 0.001298520139555501 0.0 0.08251645782930772 1.5177508124674684E-4 76-77 3.934909513804548E-5 0.001368786380873439 0.0 0.08497577627543557 1.5177508124674684E-4 78-79 3.934909513804548E-5 0.0014011088518796908 0.0 0.08656379332922098 1.5177508124674684E-4 80-81 3.934909513804548E-5 0.001417972749795996 0.0 0.08713997650802807 1.5458573089946438E-4 82-83 3.934909513804548E-5 0.0014264046987541485 0.0 0.08743368939673705 1.6020703020489945E-4 84-85 3.934909513804548E-5 0.0014502952208022477 0.0 0.08752222486079766 1.6020703020489945E-4 86-87 3.934909513804548E-5 0.0014980762648984457 0.0 0.08756438460558842 1.6020703020489945E-4 88 3.934909513804548E-5 0.0015739638055218192 0.0 0.08756578993041478 1.6301767985761698E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 47530 0.0 52.450615 1 GTATCAA 87050 0.0 38.66365 1 ATCAACG 107665 0.0 30.635878 3 TCAACGC 107730 0.0 30.601377 4 CAACGCA 109970 0.0 29.993742 5 TATCAAC 113190 0.0 29.445217 2 AACGCAG 113505 0.0 29.139256 6 ACGCAGA 130095 0.0 25.353943 7 CGCAGAG 132065 0.0 24.975845 8 GTACATG 117580 0.0 22.303057 1 TACATGG 117205 0.0 21.866615 2 ACATGGG 117715 0.0 21.167324 3 GCAGAGT 155675 0.0 21.121187 9 GAGTACT 88620 0.0 19.641062 12-13 AGAGTAC 140190 0.0 19.277464 10-11 CATGGGG 81000 0.0 19.231495 4 CAGAGTA 151870 0.0 18.711872 10-11 AGTACTT 96475 0.0 17.37822 12-13 GTACTTT 101230 0.0 17.224632 14-15 GTGGTAT 20135 0.0 16.325596 1 >>END_MODULE