##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139913_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32026301 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.75905528396801 34.0 31.0 34.0 31.0 34.0 2 32.815829339766715 34.0 31.0 34.0 31.0 34.0 3 32.903111945397626 34.0 31.0 34.0 31.0 34.0 4 36.31757567007192 37.0 37.0 37.0 35.0 37.0 5 36.25851040368352 37.0 37.0 37.0 35.0 37.0 6 36.323911962233794 37.0 37.0 37.0 35.0 37.0 7 36.29747300507792 37.0 37.0 37.0 35.0 37.0 8 36.304408554706335 37.0 37.0 37.0 35.0 37.0 9 38.097304118886534 39.0 39.0 39.0 35.0 39.0 10-11 38.0754303470763 39.0 39.0 39.0 35.0 39.0 12-13 38.0634313965887 39.0 39.0 39.0 35.0 39.0 14-15 39.571457456170165 41.0 40.0 41.0 37.0 41.0 16-17 39.587169011494645 41.0 40.0 41.0 37.0 41.0 18-19 39.630009675485155 41.0 40.0 41.0 37.0 41.0 20-21 39.643550438586445 41.0 40.0 41.0 37.0 41.0 22-23 39.60163975093232 41.0 40.0 41.0 37.0 41.0 24-25 39.57758506798643 41.0 40.0 41.0 36.5 41.0 26-27 39.505159138813056 41.0 40.0 41.0 36.0 41.0 28-29 39.453956722521426 41.0 39.0 41.0 36.0 41.0 30-31 39.37836190244845 41.0 39.0 41.0 36.0 41.0 32-33 39.30530660445993 41.0 39.0 41.0 35.5 41.0 34-35 39.25634273650666 41.0 39.0 41.0 35.0 41.0 36-37 39.21108793798841 41.0 39.0 41.0 35.0 41.0 38-39 39.16885822500044 41.0 39.0 41.0 35.0 41.0 40-41 39.13261722311955 41.0 39.0 41.0 35.0 41.0 42-43 39.060416415672165 41.0 39.0 41.0 35.0 41.0 44-45 38.68344113169325 40.5 38.5 41.0 34.5 41.0 46-47 38.74241031149165 40.0 38.0 41.0 34.5 41.0 48-49 38.823677873066615 40.0 38.0 41.0 35.0 41.0 50-51 38.78597873301692 40.0 38.0 41.0 35.0 41.0 52-53 38.6934631671522 40.0 38.0 41.0 35.0 41.0 54-55 38.57336405557902 40.0 38.0 41.0 34.0 41.0 56-57 38.417989153547495 40.0 37.5 41.0 34.0 41.0 58-59 38.26360327021815 40.0 37.0 41.0 34.0 41.0 60-61 38.07968451633768 40.0 36.5 41.0 34.0 41.0 62-63 37.8507582685474 39.0 36.0 41.0 33.5 41.0 64-65 37.59816289171039 39.0 35.5 41.0 33.0 41.0 66-67 37.333584013842525 39.0 35.0 41.0 33.0 41.0 68-69 36.96830368784343 38.0 35.0 40.0 32.5 41.0 70-71 36.655475379839814 37.0 35.0 40.0 32.0 41.0 72-73 36.369341394531276 37.0 35.0 39.0 32.0 41.0 74-75 36.031149080466804 36.0 35.0 39.0 32.0 41.0 76-77 35.69427780479948 36.0 35.0 39.0 32.0 40.0 78-79 35.36057165914195 35.0 35.0 37.0 31.5 39.5 80-81 35.05279596861239 35.0 34.0 37.0 31.0 39.0 82-83 34.76804737013765 35.0 34.0 36.5 31.0 39.0 84-85 34.515838311117136 35.0 34.0 36.0 31.0 37.0 86-87 34.2970064780076 35.0 34.0 36.0 31.0 37.0 88-89 34.246830259011546 35.0 34.0 35.5 31.0 37.0 90-91 34.21453336764668 35.0 34.0 35.0 31.0 36.0 92-93 34.136697275190386 35.0 34.0 35.0 31.0 36.0 94-95 34.180207521873434 35.0 34.0 35.0 32.0 36.0 96-97 34.228795985661066 35.0 34.0 35.0 32.0 36.0 98-99 34.32845142304306 35.0 35.0 35.0 32.5 36.0 100 34.11610252199531 35.0 34.0 35.0 32.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 5.0 19 24.0 20 108.0 21 514.0 22 2261.0 23 8151.0 24 21928.0 25 47803.0 26 89193.0 27 144528.0 28 211867.0 29 288366.0 30 374292.0 31 477273.0 32 604750.0 33 780165.0 34 1082381.0 35 1594590.0 36 2650938.0 37 5915857.0 38 1.0227777E7 39 6989155.0 40 514373.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.38082009533352 20.408950755817852 13.979794294695475 24.230434854153156 2 14.265044220998234 21.70455464088719 41.37730111260742 22.65310002550716 3 17.27126401516054 27.412791130639786 31.011417771911905 24.304527082287773 4 11.95025301236006 18.853838287475035 39.93883027577865 29.257078424386258 5 12.531699177129013 38.596973064081006 36.09449640231798 12.776831356472007 6 28.398955595902255 39.32104116550956 19.53415413163075 12.745849106957435 7 25.26669252249893 33.21805412370289 24.408728938131194 17.106524415666986 8 24.13028127399887 36.7476080945487 21.781482655865524 17.340627975586898 9 25.692743592578626 16.396429691388196 21.386986278379144 36.52384043765404 10-11 23.702714932939095 26.8314640491927 29.750605732679524 19.71521528518868 12-13 24.868747502529377 24.57446301112817 29.54649485291747 21.01029463342498 14-15 22.040228112427076 25.63440230451276 27.183480829937984 25.14188875312218 16-17 21.490806884004492 28.709712682710375 27.722964322354933 22.0765161109302 18-19 21.551639697634766 27.995182771809958 29.36135677985416 21.091820750701118 20-21 22.470209609037003 27.189741958817297 29.091563546758113 21.248484885387587 22-23 22.190476937086963 27.072547958858884 28.992513922688335 21.74446118136582 24-25 21.887523436111703 27.24198148323662 29.046298748545173 21.824196332106503 26-27 21.914448782436814 27.328431856867567 28.953674460145567 21.803444900550055 28-29 21.85245067273734 27.368963745597757 28.97418054312165 21.80440503854325 30-31 22.15194621839925 27.23086969828766 28.837121259712717 21.780062823600378 32-33 21.949351433778205 27.413725876737296 28.800914279810456 21.83600840967404 34-35 22.05171802055842 27.4079540530034 28.82252494984032 21.71780297659786 36-37 22.063939343573548 27.34060797827157 28.771240483545018 21.82421219460986 38-39 21.93729805708018 27.453284956637624 28.796374075705472 21.813042910576723 40-41 22.16660915357318 27.29109029136242 28.67527820714605 21.86702234791835 42-43 22.048971982152935 27.41759661070029 28.473872991548372 22.05955841559841 44-45 22.26846661824399 27.491859878591953 28.26153946962995 21.978134033534104 46-47 22.265470168324306 27.554416395206495 27.976974505944007 22.203138930525196 48-49 22.23078462627249 27.641980424945373 27.895965936957072 22.231269011825066 50-51 22.192403501470196 27.781626261939742 27.768780946472756 22.257189290117307 52-53 22.354753515920944 27.653328409935934 27.701814967493466 22.290103106649653 54-55 22.294947107753046 27.574823209289878 27.792916257829887 22.33731342512719 56-57 22.320965899701477 27.680645428482904 27.745894085810757 22.25249458600486 58-59 22.296293774541002 27.734297064274756 27.75057883216034 22.218830329023906 60-61 22.357990517364108 27.711984673990266 27.723559904423677 22.206464904221956 62-63 22.321813493007426 27.73972940614355 27.696200053186224 22.2422570476628 64-65 22.31915810786454 27.69063560621245 27.67244765306388 22.31775863285913 66-67 22.360094082488224 27.752320268336394 27.58608700984773 22.301498639327647 68-69 22.340191244299753 27.7121437609433 27.63080942927008 22.316855565486865 70-71 22.32834950855012 27.477809368367385 27.709074021305756 22.48476710177674 72-73 22.36661509795391 27.533584826212287 27.618460432713487 22.481339643120315 74-75 22.207383870591162 27.726031426643672 27.62423518717952 22.442349515585647 76-77 22.36571345633288 27.638489797386335 27.56092407155726 22.43487267472353 78-79 22.31151572576214 27.676595178793562 27.525477886411764 22.486411209032536 80-81 22.336108036870307 27.68590232159034 27.51979263538813 22.458197006151227 82-83 22.369613478386793 27.625826207375447 27.64302037173256 22.3615399425052 84-85 22.431165568450993 27.638829749227494 27.542649508913186 22.38735517340832 86-87 22.25354162924415 27.7089237583859 27.63666955761505 22.400865054754902 88-89 22.33146299058075 27.632875640499062 27.579111773472892 22.4565495954473 90-91 22.39607002591848 27.638433767853837 27.59255012587158 22.3729460803561 92-93 22.43838379961111 27.645691836910004 27.566255873841445 22.349668489637445 94-95 22.254748975194822 27.681192558586936 27.623900718837813 22.440157747380425 96-97 22.357719868090733 27.801203203399005 27.66222163818201 22.17885529032825 98-99 23.435009769996316 29.754336449004455 27.83791417969474 18.972739601304493 100 22.36058452032912 30.670934085335094 21.72277603783644 25.24570535649935 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 6648.0 1 6597.0 2 9525.0 3 12813.0 4 16515.0 5 27945.5 6 37737.0 7 43925.0 8 46930.5 9 43311.5 10 35980.0 11 28294.0 12 28820.0 13 39644.0 14 68404.0 15 111249.5 16 146332.5 17 165238.5 18 169068.0 19 158734.5 20 140382.5 21 123901.5 22 117571.5 23 128500.0 24 158442.0 25 205967.0 26 268164.0 27 336447.0 28 406668.5 29 483308.0 30 557685.5 31 625809.5 32 700419.0 33 773541.0 34 841614.5 35 907632.0 36 977935.5 37 1044398.5 38 1090390.5 39 1125547.0 40 1165953.5 41 1197719.5 42 1215055.5 43 1239439.0 44 1267092.5 45 1298415.5 46 1318660.0 47 1322378.0 48 1318302.5 49 1290828.0 50 1254634.5 51 1216167.5 52 1162047.5 53 1098686.5 54 1034797.0 55 962261.5 56 884451.5 57 804947.5 58 721374.0 59 632547.5 60 529287.5 61 427622.0 62 336980.0 63 258873.5 64 194973.5 65 143636.5 66 105831.5 67 79804.5 68 60602.5 69 44952.0 70 32695.0 71 23734.5 72 17454.5 73 12425.0 74 8671.0 75 5903.5 76 3945.0 77 2607.0 78 1768.5 79 1244.0 80 867.5 81 627.5 82 460.0 83 339.5 84 253.5 85 172.0 86 109.0 87 69.5 88 54.0 89 45.0 90 34.0 91 25.5 92 17.0 93 8.5 94 5.0 95 5.5 96 6.5 97 7.0 98 7.5 99 9.5 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06721662923233002 6 0.0 7 0.0 8 1.7485628452689557E-4 9 8.555468207208819E-4 10-11 1.0928517782930973E-5 12-13 4.6368139736149985E-4 14-15 0.006258918255967181 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.014221358600675775 24-25 0.0 26-27 2.8117268190579904E-5 28-29 0.002777136195588154 30-31 0.014140890894586644 32-33 0.0 34-35 3.613270808457404E-5 36-37 8.983318025706884E-5 38-39 5.3842178661049216E-5 40-41 0.0 42-43 0.004948423977440956 44-45 0.021673119282988314 46-47 1.6284678854652286E-6 48-49 0.002769951838303905 50-51 3.143485660361463E-4 52-53 0.0 54-55 1.3415020523472212E-5 56-57 0.015046932751153826 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 1.92955858698565E-5 68-69 0.01571917053579006 70-71 0.02311719337465342 72-73 0.0 74-75 0.013180692133716834 76-77 0.0 78-79 0.01655739940318017 80-81 8.203769400842549E-5 82-83 0.014429339488746827 84-85 0.0 86-87 0.015279771874771026 88-89 0.02989346927767427 90-91 2.7416594606717176E-5 92-93 1.544904888821811E-4 94-95 0.01327894350753453 96-97 6.110153729227437E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 652.0 20-21 2371.0 22-23 4732.0 24-25 7234.0 26-27 12733.0 28-29 24950.0 30-31 55688.0 32-33 70040.0 34-35 91622.0 36-37 137685.0 38-39 182215.0 40-41 184627.0 42-43 214386.0 44-45 266896.0 46-47 258715.0 48-49 235995.0 50-51 212597.0 52-53 195868.0 54-55 205781.0 56-57 217330.0 58-59 224449.0 60-61 228419.0 62-63 213248.0 64-65 216845.0 66-67 232901.0 68-69 244531.0 70-71 249091.0 72-73 230763.0 74-75 227493.0 76-77 237786.0 78-79 255040.0 80-81 265736.0 82-83 252722.0 84-85 243516.0 86-87 249264.0 88-89 268355.0 90-91 287683.0 92-93 290019.0 94-95 332943.0 96-97 993546.0 98-99 1958041.0 100-101 2.1741793E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.71134124821013 #Duplication Level Percentage of deduplicated Percentage of total 1 85.97879434623384 66.81527427549858 2 8.859744537072377 13.770052621847938 3 2.5810175415152337 6.017230048089201 4 1.0457555443611966 3.2506826388024277 5 0.5140743120093817 1.9974702143749954 6 0.3154875016873606 1.4710174141903047 7 0.1891276233714836 1.0288152895499028 8 0.1223389555900766 0.7605699460648054 9 0.08692206664032551 0.6079347344417397 >10 0.2979312658131649 3.5718432225011427 >50 0.006338859848435188 0.32928202422055064 >100 0.0023681195416530142 0.2949764559602554 >500 5.975283291043485E-5 0.03198877363805383 >1k 3.957348252028357E-5 0.052862340820033854 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.244867304531984E-6 2 0.0 3.122433652265992E-5 0.0 0.0 6.244867304531984E-6 3 0.0 3.122433652265992E-5 0.0 1.561216826132996E-5 6.244867304531984E-6 4 3.122433652265992E-6 1.1553004513384172E-4 0.0 1.561216826132996E-5 6.244867304531984E-6 5 3.122433652265992E-6 1.1553004513384172E-4 0.0 1.8734601913595952E-5 6.244867304531984E-6 6 7.493840765438381E-5 1.1553004513384172E-4 0.0 2.1857035565861946E-5 9.367300956797976E-6 7 7.493840765438381E-5 1.186524787861077E-4 0.0 3.122433652265992E-5 9.367300956797976E-6 8 7.493840765438381E-5 1.3114221339517168E-4 0.0 3.7469203827191904E-5 9.367300956797976E-6 9 7.493840765438381E-5 2.2481522296315145E-4 0.0 4.371407113172389E-5 1.561216826132996E-5 10-11 8.742814226344778E-5 2.2481522296315145E-4 0.0 4.6836504783989886E-5 1.561216826132996E-5 12-13 9.679544322024575E-5 2.2793765661541744E-4 0.0 5.464258891465486E-5 1.561216826132996E-5 14-15 1.0147909369864474E-4 2.9975363061753523E-4 0.0 5.932623939305385E-5 2.6540686044260934E-5 16-17 1.608053330916986E-4 3.0443728109593425E-4 0.0 6.713232352371884E-5 3.7469203827191904E-5 18-19 1.6548898357009759E-4 3.3722283444472716E-4 0.0 8.586692543731479E-5 4.9958938436255874E-5 20-21 1.6861141722236358E-4 3.8249812240258405E-4 0.0 1.202136956122407E-4 5.308137208852187E-5 22-23 1.8422358548369355E-4 4.2465097670817494E-4 0.0 1.4050951435196963E-4 6.088745621918685E-5 24-25 1.920296696143585E-4 5.011506011886918E-4 0.0 1.592441162655656E-4 6.869354034985183E-5 26-27 1.967133200927575E-4 5.448646723204156E-4 0.0 2.0295818739728952E-4 7.025475717598483E-5 28-29 1.967133200927575E-4 5.479871059726816E-4 0.0 3.7937568875031806E-4 8.742814226344778E-5 30-31 1.967133200927575E-4 6.198030799747995E-4 0.0 9.726380826808566E-4 9.367300956797977E-5 32-33 1.998357537450235E-4 6.276091641054645E-4 0.0 0.0022184891099349875 9.679544322024577E-5 34-35 2.0920305470182148E-4 7.165985231950452E-4 0.0 0.003737553081762393 1.186524787861077E-4 36-37 2.2013157248475246E-4 8.08710315936892E-4 0.0 0.006057521285396024 1.186524787861077E-4 38-39 2.2325400613701845E-4 8.36812218807286E-4 0.0 0.009882502509421865 1.233361292645067E-4 40-41 2.3106009026768344E-4 9.117506264616698E-4 0.0 0.01452243891668913 1.248973460906397E-4 42-43 2.404273912244814E-4 9.336076620275317E-4 0.0 0.018896968463513783 1.2645856291677269E-4 44-45 2.4823347535514635E-4 0.0010257194547693784 0.0 0.023585302592391173 1.4363194800423565E-4 46-47 2.5603955948581136E-4 0.0011022190792498953 0.0 0.028988674027637475 1.545604657871666E-4 48-49 2.576007763119444E-4 0.0011100251633805601 0.0 0.0347339519478069 1.639277667439646E-4 50-51 2.7165172774714134E-4 0.001289565098385855 0.0 0.04099443142060021 1.6705020039623058E-4 52-53 2.8258024553007234E-4 0.0013020548329949187 0.0 0.0466101283442006 2.013969705711565E-4 54-55 2.857026791823383E-4 0.0013114221339517167 0.0 0.05221489675001806 2.2013157248475246E-4 56-57 2.872638960084713E-4 0.0013301567358653128 0.0 0.057711941194832334 2.2481522296315145E-4 58-59 2.903863296607373E-4 0.0013395240368221108 0.0 0.06324333240982155 2.3262130709381643E-4 60-61 3.028760642698013E-4 0.0013707483733447707 0.0 0.06905730387034081 2.419886080506144E-4 62-63 3.3410040079246117E-4 0.0013926054089106327 0.0 0.07454810344785057 2.576007763119444E-4 64-65 3.3410040079246117E-4 0.001570584127089794 0.0 0.07971104749187238 2.5916199313807736E-4 66-67 3.419064849231262E-4 0.00157370656074206 0.0 0.08493956264259178 2.5916199313807736E-4 68-69 3.4971256905379114E-4 0.00162054306552605 0.0 0.0904053827508834 2.6228442679034335E-4 70-71 3.590798700105891E-4 0.001637716450613513 0.0 0.0950562476759336 2.778965950516733E-4 72-73 3.809369055764511E-4 0.001643961317918045 0.0 0.0986470463760395 2.9194754648687027E-4 74-75 3.809369055764511E-4 0.0016892366058759017 0.0 0.10159774617743086 2.935087633130033E-4 76-77 3.8874298970711604E-4 0.0017829096154438817 0.0 0.1043017737202932 2.935087633130033E-4 78-79 3.99671507490047E-4 0.0018281849034017385 0.0 0.10621114189865385 2.935087633130033E-4 80-81 3.99671507490047E-4 0.0018313073370540044 0.0 0.10678410847384467 3.0131484744366825E-4 82-83 4.02793941142313E-4 0.0018359909875324035 0.0 0.10713382104289845 3.138045820527322E-4 84-85 4.05916374794579E-4 0.0018594092399243983 0.0 0.10724154500390164 3.153657988788652E-4 86-87 4.07477591620712E-4 0.0018968784437515902 0.0 0.10728682029185949 3.169270157049982E-4 88 4.1528367575137696E-4 0.002026459440320629 0.0 0.10729306515916402 3.184882325311312E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 42200 0.0 49.519558 1 GTATCAA 75720 0.0 36.63822 1 ATCAACG 91575 0.0 29.580484 3 TCAACGC 91625 0.0 29.550247 4 CAACGCA 92965 0.0 29.119677 5 AACGCAG 96095 0.0 28.255342 6 TATCAAC 97290 0.0 28.139135 2 ACGCAGA 109125 0.0 24.846245 7 CGCAGAG 111050 0.0 24.411785 8 GTACATG 96300 0.0 22.02204 1 TACATGG 97390 0.0 21.20535 2 GCAGAGT 132250 0.0 20.513996 9 ACATGGG 98380 0.0 20.497625 3 GAGTACT 76110 0.0 19.219 12-13 AGAGTAC 117235 0.0 19.149729 10-11 CATGGGG 71340 0.0 18.617252 4 CAGAGTA 127045 0.0 18.573654 10-11 AGTACTT 82895 0.0 17.004858 12-13 GTACTTT 85975 0.0 16.904078 14-15 GTGGTAT 19430 0.0 14.535182 1 >>END_MODULE