##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139911_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9910523 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4116395269957 33.0 31.0 34.0 31.0 34.0 2 32.55906464270352 34.0 31.0 34.0 31.0 34.0 3 32.667981296244406 34.0 31.0 34.0 31.0 34.0 4 36.18840186335272 37.0 35.0 37.0 35.0 37.0 5 36.042127141019705 37.0 35.0 37.0 35.0 37.0 6 36.08851914273344 37.0 35.0 37.0 35.0 37.0 7 36.059566886631515 37.0 35.0 37.0 35.0 37.0 8 36.05269207286033 37.0 35.0 37.0 35.0 37.0 9 37.8907780144398 39.0 38.0 39.0 35.0 39.0 10-11 37.76724876174547 39.0 37.5 39.0 35.0 39.0 12-13 37.786031423366865 39.0 37.5 39.0 35.0 39.0 14-15 39.092320102581866 40.0 38.5 41.0 36.0 41.0 16-17 39.04820083662588 40.0 38.0 41.0 36.0 41.0 18-19 39.135849641840295 40.0 38.5 41.0 36.0 41.0 20-21 39.142625472249456 40.0 39.0 41.0 36.0 41.0 22-23 39.10163038210569 40.0 39.0 41.0 36.0 41.0 24-25 39.08009373766458 40.0 39.0 41.0 36.0 41.0 26-27 38.986791724404995 40.0 38.5 41.0 35.5 41.0 28-29 38.904740966351326 40.0 38.0 41.0 35.0 41.0 30-31 38.749059721321856 40.0 38.0 41.0 35.0 41.0 32-33 38.64574012417893 40.0 38.0 41.0 35.0 41.0 34-35 38.60275557541468 40.0 38.0 41.0 35.0 41.0 36-37 38.50659358014404 40.0 38.0 41.0 34.5 41.0 38-39 38.47027103386183 40.0 38.0 41.0 34.0 41.0 40-41 38.473661786512295 40.0 38.0 41.0 34.0 41.0 42-43 38.44168115035287 40.0 38.0 41.0 34.0 41.0 44-45 38.3409554566229 40.0 38.0 41.0 34.0 41.0 46-47 38.28992247678693 40.0 38.0 41.0 34.0 41.0 48-49 38.275098422224985 40.0 38.0 41.0 34.0 41.0 50-51 38.20174875752279 40.0 38.0 41.0 33.5 41.0 52-53 38.07632465141974 40.0 37.0 41.0 33.0 41.0 54-55 37.908822355794946 40.0 37.0 41.0 33.0 41.0 56-57 37.78710007482562 39.5 37.0 41.0 33.0 41.0 58-59 37.570245552783206 39.0 36.0 41.0 33.0 41.0 60-61 37.41169251418439 39.0 36.0 40.5 32.0 41.0 62-63 37.20602907137296 39.0 35.5 40.0 32.0 41.0 64-65 36.90242867771681 38.5 35.0 40.0 31.5 41.0 66-67 36.834744489823024 38.0 35.0 40.0 32.0 41.0 68-69 36.60622577162614 37.5 35.0 40.0 31.5 41.0 70-71 36.29484776591963 37.0 35.0 39.5 31.0 41.0 72-73 35.98006463276057 36.5 35.0 39.0 31.0 41.0 74-75 35.582554565196496 36.0 34.0 39.0 31.0 40.0 76-77 33.52625098759941 34.5 32.0 36.5 28.0 39.0 78-79 34.72121698830895 35.0 34.0 37.0 30.0 39.0 80-81 34.72067669693332 35.0 34.0 37.0 31.0 39.0 82-83 34.42605999143758 35.0 34.0 36.5 30.0 39.0 84-85 34.158832434296045 35.0 34.0 36.0 30.0 37.0 86-87 33.94510797233497 35.0 34.0 36.0 30.0 37.0 88-89 33.7052684902499 35.0 34.0 35.0 30.0 37.0 90-91 33.53791663359714 35.0 33.5 35.0 30.0 36.0 92-93 33.47020334374314 35.0 33.0 35.0 30.0 36.0 94-95 33.43953463193479 35.0 33.0 35.0 30.0 36.0 96-97 33.46899467099939 35.0 33.0 35.0 30.0 35.5 98-99 33.49292713610339 35.0 33.0 35.0 30.0 35.0 100-101 32.20602199365142 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 3.0 18 7.0 19 17.0 20 65.0 21 201.0 22 792.0 23 2636.0 24 6909.0 25 15156.0 26 28356.0 27 47091.0 28 70237.0 29 97941.0 30 131251.0 31 173571.0 32 230199.0 33 317054.0 34 468909.0 35 729651.0 36 1316468.0 37 2423244.0 38 2777221.0 39 1058052.0 40 15490.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.656671398673915 20.970053749938323 14.171815150421427 23.201459700966335 2 14.277764256240793 22.518091614669295 41.321161124652825 21.882983004437083 3 16.999372081320868 28.57128874885362 31.70208341258414 22.727255757241373 4 11.642796247988123 19.426290620585814 40.63822867874884 28.292684452677218 5 12.152709738364731 39.09518719210729 36.15013308088763 12.601969988640347 6 27.337558270133677 39.90527038784936 19.938473479149383 12.818697862867582 7 24.53561734330267 34.08810009320396 24.60531094070414 16.770971622789233 8 24.24428973052561 35.94672224689869 22.381120264834856 17.42786775774085 9 26.090864537661073 15.912902977454946 21.555528266907732 36.44070421797625 10-11 23.24533272401439 27.057903176307075 30.116986311059307 19.579777788619232 12-13 24.645246999466323 25.10543124671875 29.816118017207426 20.433203736607496 14-15 21.9412380035318 26.094859190551134 27.71000636596199 24.253896439955074 16-17 20.945304118714024 29.331226605554207 28.12428106350535 21.59918821222642 18-19 21.01377919485767 28.387332008075056 30.001480245084995 20.597408551982284 20-21 22.279034034598922 27.42755085427185 29.636487761256653 20.65692734987258 22-23 21.840662251949713 27.525232697110546 29.437150838270735 21.196954212669 24-25 21.377630748334838 27.785187803259582 29.61090097530675 21.226280473098832 26-27 21.340404394087045 27.90120141444107 29.5128686040883 21.245525587383586 28-29 21.238508925290287 27.94152994163393 29.529898786430543 21.290062346645243 30-31 21.51415426261553 27.84075680232172 29.42403453268402 21.221054402378726 32-33 21.289616866221746 28.048399724193455 29.36651484043629 21.2954685691485 34-35 21.393687311069527 28.164966624564826 29.388714753501493 21.052631310864157 36-37 21.434927079662238 28.088873669158726 29.184914346788204 21.291284904390835 38-39 21.36945475270384 28.12401604150055 29.234596532424572 21.271932673371037 40-41 21.524612681627115 28.04606843863311 29.14266575829288 21.2866531214469 42-43 21.542692235852257 28.129355303174986 28.911877006474306 21.41607545449845 44-45 21.566786999400485 28.314048983155804 28.610834037875843 21.50832997956787 46-47 21.729467335731147 28.26861994264196 28.246799356789005 21.75511336483789 48-49 21.696239323075222 28.384307814702897 28.156223410613624 21.76322945160826 50-51 21.66745068368477 28.519715560818888 28.038778687895434 21.77405506760091 52-53 21.811589007252756 28.45547103522723 27.946606359074046 21.78633359844597 54-55 21.77354581733767 28.361471641200815 27.975539299899886 21.889443241561633 56-57 21.86551932030866 28.424959456848747 27.869205353109294 21.840315869733296 58-59 21.79158544862208 28.451673562643858 27.95298917841924 21.80375181031482 60-61 21.88068461101159 28.4764485856896 27.847614133852144 21.79525266944667 62-63 21.805791175018562 28.493369786298018 27.83427100144068 21.866568037242743 64-65 21.782547992057683 28.396970000505817 27.83862001517919 21.981861992257315 66-67 21.835769904243456 28.46538028548436 27.746036364291154 21.95281344598103 68-69 21.907191193788204 28.390065292269316 27.738280606361425 21.96446290758105 70-71 21.907883381688936 28.150302671069692 27.8184340709221 22.123379876319273 72-73 21.898816382546023 28.157743025912417 27.808686299583236 22.13475429195832 74-75 21.843821995111046 28.170256807898898 27.80568240933948 22.180238787650573 76-77 21.921109757782588 28.136758503014047 27.758162656726277 22.183969082477084 78-79 21.939387322377808 28.159347175014172 27.686766714837507 22.214498787770513 80-81 21.95829329597767 28.087790255873312 27.716628586313018 22.237287861836 82-83 21.969696428815986 28.02837262606524 27.81305439624928 22.188876548869494 84-85 22.080748438879898 28.017327864852327 27.710629177095925 22.19129451917185 86-87 21.96100816744187 28.007164670080364 27.823704524738318 22.208122637739443 88-89 22.084570477295816 27.923606954165887 27.763744402401596 22.2280781661367 90-91 22.06459313370919 27.909404769844 27.88447996662101 22.141522129825802 92-93 22.02111062365257 27.805402874287577 27.957565478963236 22.215921023096612 94-95 21.912199795066243 27.839290980970265 27.98467218271419 22.2638370412493 96-97 21.910068320314874 27.8419724297093 28.04375955939574 22.204199690580086 98-99 22.152349801371518 28.471756005957317 28.11445095019937 21.2614432424718 100-101 22.954638726452185 31.027462045168207 25.22054107398104 20.79735815439857 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1283.0 1 1411.5 2 3155.5 3 4983.5 4 7055.0 5 12457.0 6 16596.0 7 18489.5 8 19008.5 9 17527.0 10 15240.5 11 13210.0 12 14716.0 13 21282.5 14 35960.5 15 55992.0 16 72168.0 17 80915.5 18 81766.0 19 75610.0 20 66121.5 21 57207.5 22 52427.0 23 54957.0 24 64973.5 25 81058.0 26 102085.5 27 124749.5 28 148028.0 29 171738.5 30 193693.0 31 216322.0 32 240154.0 33 263726.5 34 287730.0 35 310304.0 36 333277.0 37 352907.0 38 365382.0 39 375586.5 40 387132.0 41 396419.0 42 401387.0 43 407311.0 44 412656.5 45 415423.5 46 416428.5 47 417061.0 48 414432.0 49 406658.5 50 394330.0 51 375354.5 52 351527.5 53 325897.0 54 299386.5 55 271406.0 56 244640.5 57 218454.5 58 191428.0 59 164654.5 60 137523.5 61 110696.5 62 86448.5 63 66621.5 64 50052.0 65 37069.5 66 27528.0 67 20410.0 68 15293.5 69 11106.5 70 8009.5 71 5857.0 72 4217.5 73 3029.0 74 2142.5 75 1489.0 76 1004.5 77 656.0 78 442.5 79 311.0 80 231.5 81 173.0 82 133.5 83 102.5 84 76.0 85 57.5 86 39.5 87 28.0 88 20.5 89 17.0 90 16.0 91 13.5 92 11.0 93 9.5 94 6.5 95 4.0 96 3.0 97 2.5 98 2.5 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004106745930562898 3 4.0361139366711526E-5 4 0.0 5 9.081256357510093E-5 6 0.0 7 0.0 8 4.5406281787550466E-4 9 1.2108341810013456E-4 10-11 4.5406281787550466E-5 12-13 3.632502543004037E-4 14-15 2.0180569683355763E-5 16-17 5.14604526925572E-4 18-19 2.0180569683355763E-5 20-21 7.063491250629974E-5 22-23 0.0 24-25 0.0 26-27 1.0604358017467802E-4 28-29 5.052770631195139E-6 30-31 7.085325026633231E-5 32-33 4.4154024870287403E-4 34-35 0.0 36-37 3.839042757722618E-4 38-39 0.0011340846884958036 40-41 0.0 42-43 0.0 44-45 3.498186428849353E-4 46-47 0.0 48-49 0.0 50-51 0.0 52-53 5.80898690106648E-4 54-55 0.0033585859572053665 56-57 0.003710558007113911 58-59 0.004411532792753807 60-61 9.648042288747643E-4 62-63 1.1605280727678953E-5 64-65 5.626664811430242E-4 66-67 0.0 68-69 0.0 70-71 6.058207010629852E-6 72-73 1.5319426276455962E-4 74-75 2.4781165273583134E-5 76-77 0.0 78-79 0.0 80-81 4.6147432843948353E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0011832985548436308 92-93 1.3903092249311085E-4 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 213.0 20-21 1336.0 22-23 2613.0 24-25 3606.0 26-27 5321.0 28-29 11690.0 30-31 26279.0 32-33 33170.0 34-35 43725.0 36-37 63110.0 38-39 79125.0 40-41 82603.0 42-43 96457.0 44-45 114029.0 46-47 107493.0 48-49 97590.0 50-51 85715.0 52-53 74573.0 54-55 80509.0 56-57 84785.0 58-59 86781.0 60-61 92109.0 62-63 85489.0 64-65 87436.0 66-67 93687.0 68-69 93721.0 70-71 95282.0 72-73 89451.0 74-75 88989.0 76-77 85707.0 78-79 92566.0 80-81 98029.0 82-83 93943.0 84-85 92629.0 86-87 95546.0 88-89 104473.0 90-91 119642.0 92-93 117151.0 94-95 131324.0 96-97 196405.0 98-99 831065.0 100-101 5945156.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.64939972782784 #Duplication Level Percentage of deduplicated Percentage of total 1 89.27311291640852 75.56915420208577 2 7.505884050356936 12.707371585787836 3 1.81616386000651 4.612115416707774 4 0.6782602437950541 2.29657289986006 5 0.3001674003879421 1.2704495130350928 6 0.14355844598807613 0.7291281767250264 7 0.08389754526805451 0.49713137919053546 8 0.050542440652569666 0.34227098096155084 9 0.03540511687672207 0.26973197018172995 >10 0.10949304087047547 1.4382340556871251 >50 0.002791074802505499 0.1625808588349112 >100 7.04040375974459E-4 0.09223684649813171 >500 1.9824210648899303E-5 0.013022114444496947 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.0180569683355763E-5 0.0 1.0090284841677881E-5 0.0 3 0.0 3.0270854525033643E-5 0.0 1.0090284841677881E-5 0.0 4 0.0 7.063199389174517E-5 0.0 1.0090284841677881E-5 1.0090284841677881E-5 5 0.0 9.081256357510093E-5 0.0 1.0090284841677881E-5 1.0090284841677881E-5 6 0.0 9.081256357510093E-5 0.0 2.0180569683355763E-5 2.0180569683355763E-5 7 0.0 1.0090284841677881E-4 0.0 3.0270854525033643E-5 2.0180569683355763E-5 8 0.0 1.0090284841677881E-4 0.0 4.0361139366711526E-5 2.0180569683355763E-5 9 0.0 1.4126398778349034E-4 0.0 7.063199389174517E-5 3.0270854525033643E-5 10-11 1.0090284841677881E-5 1.4126398778349034E-4 0.0 1.0594799083761774E-4 3.0270854525033643E-5 12-13 1.0090284841677881E-5 1.4126398778349034E-4 0.0 1.261285605209735E-4 3.5315996945872586E-5 14-15 1.0090284841677881E-5 2.472119786211081E-4 0.0 1.5639941504600716E-4 5.5496566629228346E-5 16-17 2.0180569683355763E-5 2.724376907253028E-4 0.0 1.8162512715020186E-4 6.0541709050067285E-5 18-19 2.0180569683355763E-5 2.875731179878196E-4 0.0 2.774828331461417E-4 9.081256357510093E-5 20-21 2.0180569683355763E-5 3.027085452503364E-4 0.0 4.1370167850879314E-4 1.1099313325845669E-4 22-23 2.0180569683355763E-5 3.279342573545311E-4 0.0 9.686673448010767E-4 1.2612856052097353E-4 24-25 2.0180569683355763E-5 3.4306968461704794E-4 0.0 0.003052311164607559 1.6648969988768505E-4 26-27 3.0270854525033643E-5 3.632502543004037E-4 0.0 0.006876529119603476 1.7153484230852397E-4 28-29 3.0270854525033643E-5 3.834308239837595E-4 0.0 0.02674934511528806 1.7153484230852397E-4 30-31 3.0270854525033643E-5 4.3388224819214887E-4 0.0 0.03882237092835565 1.7153484230852397E-4 32-33 3.5315996945872586E-5 4.3388224819214887E-4 0.0 0.04339326996163573 1.7153484230852397E-4 34-35 4.0361139366711526E-5 4.944239572422162E-4 0.0 0.04922545460012555 1.7153484230852397E-4 36-37 4.0361139366711526E-5 5.448753814506056E-4 0.0 0.056899116222221574 1.7153484230852397E-4 38-39 4.0361139366711526E-5 5.600108087131224E-4 0.0 0.07200427263021336 1.9171541199187973E-4 40-41 4.0361139366711526E-5 5.852365208173172E-4 0.0 0.10690152275515633 1.9171541199187973E-4 42-43 4.0361139366711526E-5 5.95326805658995E-4 0.0 0.11944879195578276 1.9676055441271868E-4 44-45 4.0361139366711526E-5 6.407330874465454E-4 0.0 0.13696552644093557 2.0685083925439657E-4 46-47 4.0361139366711526E-5 6.810942268132569E-4 0.0 0.15772124236026697 2.1694112409607446E-4 48-49 4.0361139366711526E-5 6.861393692340959E-4 0.0 0.17466283060944413 2.3207655135859128E-4 50-51 4.0361139366711526E-5 7.315456510216464E-4 0.0 0.1933147221392857 2.3207655135859128E-4 52-53 4.0361139366711526E-5 7.416359358633243E-4 0.0 0.21713788465048717 2.371216937794302E-4 54-55 4.0361139366711526E-5 7.517262207050021E-4 0.0 0.2627056109955045 2.4216683620026914E-4 56-57 4.0361139366711526E-5 7.567713631258411E-4 0.0 0.3139945288457532 2.472119786211081E-4 58-59 4.0361139366711526E-5 7.668616479675189E-4 0.0 0.3674579030793834 2.5730226346278593E-4 60-61 4.0361139366711526E-5 7.870422176508747E-4 0.0 0.4029706605796687 2.623474058836249E-4 62-63 4.0361139366711526E-5 8.021776449133916E-4 0.0 0.4188527689204697 2.774828331461417E-4 64-65 4.0361139366711526E-5 9.484867751177208E-4 0.0 0.43372584877710285 2.8757311798781966E-4 66-67 4.0361139366711526E-5 9.585770599593987E-4 0.0 0.4397396585427429 2.926182604086586E-4 68-69 4.0361139366711526E-5 9.636222023802377E-4 0.0 0.4452439089238782 2.926182604086586E-4 70-71 4.0361139366711526E-5 9.888479144844324E-4 0.0 0.4514090729621434 2.926182604086586E-4 72-73 4.0361139366711526E-5 0.001014073626588627 0.0 0.456151506837732 3.228891149336922E-4 74-75 4.0361139366711526E-5 0.0010645250507970165 0.0 0.4599656345078862 3.38024542196209E-4 76-77 4.0361139366711526E-5 0.0011200216174262448 0.0 0.46316425480269807 3.5315996945872583E-4 78-79 4.0361139366711526E-5 0.0011402021871096005 0.0 0.4660753019795222 3.5820511187956475E-4 80-81 4.0361139366711526E-5 0.0011402021871096005 0.0 0.46748289671493626 3.7838568156292054E-4 82-83 4.0361139366711526E-5 0.0011654278992137951 0.0 0.46814381037206615 4.0361139366711525E-4 84-85 4.0361139366711526E-5 0.001200743896159668 0.0 0.46864832461415 4.1370167850879314E-4 86-87 4.0361139366711526E-5 0.0012411050355263793 0.0 0.46889553659277117 4.2883710577130995E-4 88-89 4.0361139366711526E-5 0.0013117370294181245 0.0 0.4690065297260296 4.4397253303382676E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17750 0.0 43.273006 1 GTATCAA 31860 0.0 37.29815 1 TCAACGC 39510 0.0 29.756117 4 ATCAACG 39610 0.0 29.691612 3 CAACGCA 39995 0.0 29.363728 5 TATCAAC 40545 0.0 29.122194 2 AACGCAG 40535 0.0 29.06609 6 ACGCAGA 45965 0.0 25.586657 7 CGCAGAG 46460 0.0 25.314049 8 GCAGAGT 53750 0.0 21.786629 9 GTACATG 43345 0.0 20.932724 1 TACATGG 43235 0.0 20.73323 2 ACATGGG 43365 0.0 20.127054 3 AGAGTAC 48445 0.0 19.26247 10-11 GAGTACT 27170 0.0 19.2435 12-13 CAGAGTA 52430 0.0 18.20355 10-11 CATGGGG 27080 0.0 17.94051 4 AGTACTT 29205 0.0 17.852205 12-13 GTACTTT 31005 0.0 16.78285 14-15 ATGGGGG 14350 0.0 15.242384 5 >>END_MODULE