##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139910_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15367658 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.806363858435684 33.0 31.0 34.0 30.0 34.0 2 31.844641128791388 33.0 31.0 34.0 29.0 34.0 3 31.912520567545165 34.0 31.0 34.0 29.0 34.0 4 35.402727728584274 37.0 35.0 37.0 33.0 37.0 5 35.231720409186615 37.0 35.0 37.0 32.0 37.0 6 35.32507588339095 37.0 35.0 37.0 32.0 37.0 7 35.23857961961413 37.0 35.0 37.0 32.0 37.0 8 35.23253992247875 37.0 35.0 37.0 32.0 37.0 9 36.80096075797626 39.0 37.0 39.0 32.0 39.0 10-11 36.76829660706921 39.0 37.0 39.0 32.0 39.0 12-13 36.73371528049362 39.0 37.0 39.0 32.0 39.0 14-15 37.984080593152186 40.0 38.0 41.0 32.0 41.0 16-17 38.011592527631734 40.0 38.0 41.0 32.0 41.0 18-19 38.05305190289893 40.0 38.0 41.0 32.0 41.0 20-21 38.0943231509622 40.0 38.0 41.0 32.0 41.0 22-23 38.050259972639026 40.0 38.0 41.0 32.0 41.0 24-25 38.03027787931009 40.0 38.0 41.0 32.0 41.0 26-27 37.9682303282774 40.0 37.0 41.0 32.0 41.0 28-29 37.87958573351245 40.0 37.0 41.0 32.0 41.0 30-31 37.83496510341203 40.0 37.0 41.0 32.0 41.0 32-33 37.734461718684486 40.0 37.0 41.0 32.0 41.0 34-35 37.63834963835518 40.0 37.0 41.0 31.0 41.0 36-37 37.596678568224576 40.0 37.0 41.0 31.0 41.0 38-39 37.57594960009683 40.0 37.0 41.0 31.0 41.0 40-41 37.54462814996512 40.0 36.5 41.0 31.0 41.0 42-43 37.507661352182524 40.0 36.0 41.0 31.0 41.0 44-45 37.46484822671768 40.0 36.0 41.0 31.0 41.0 46-47 37.402268919428984 40.0 36.0 41.0 31.0 41.0 48-49 37.34897256817732 40.0 36.0 41.0 31.0 41.0 50-51 37.26446750871054 40.0 36.0 41.0 31.0 41.0 52-53 37.15982796123097 39.5 36.0 41.0 30.5 41.0 54-55 37.21146486265656 39.0 36.0 41.0 30.5 41.0 56-57 37.289772782265686 39.0 36.0 41.0 31.0 41.0 58-59 37.19571348818779 39.0 35.0 41.0 31.0 41.0 60-61 37.08295563671026 39.0 35.0 41.0 31.0 41.0 62-63 36.90513232249933 39.0 35.0 41.0 31.0 41.0 64-65 36.69789105601619 38.5 35.0 41.0 31.0 41.0 66-67 36.46416128175461 38.0 35.0 40.0 30.0 41.0 68-69 36.232771194806446 37.0 35.0 40.0 30.0 41.0 70-71 35.96521090366104 37.0 34.5 39.5 30.0 41.0 72-73 35.68744565132691 36.5 34.0 39.0 30.0 41.0 74-75 35.401012151230006 36.0 34.0 39.0 30.0 41.0 76-77 35.09993028899028 35.5 34.0 38.5 30.0 40.0 78-79 34.793240120195804 35.0 34.0 37.0 29.5 39.0 80-81 34.52615488280979 35.0 34.0 37.0 29.5 39.0 82-83 34.24969862333532 35.0 34.0 36.5 29.0 39.0 84-85 34.018131854795726 35.0 34.0 36.0 29.0 37.0 86-87 33.823332530357405 35.0 34.0 36.0 29.0 37.0 88-89 33.66955422860992 35.0 33.0 35.0 29.0 37.0 90-91 33.557087653218176 35.0 33.0 35.0 29.0 36.0 92-93 33.47997746969894 35.0 33.0 35.0 29.0 36.0 94-95 33.518410149021676 35.0 33.5 35.0 29.5 36.0 96-97 33.669595943958896 35.0 34.0 35.0 30.0 36.0 98-99 33.748717625509066 35.0 34.0 35.0 30.0 36.0 100 33.10795126254897 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 3.0 15 14.0 16 37.0 17 189.0 18 1343.0 19 6827.0 20 21129.0 21 46561.0 22 77804.0 23 106229.0 24 133593.0 25 160059.0 26 184913.0 27 210008.0 28 238088.0 29 273432.0 30 316752.0 31 373826.0 32 452519.0 33 562287.0 34 733380.0 35 989755.0 36 1475095.0 37 2638164.0 38 3886076.0 39 2356673.0 40 122900.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.3071242215307 21.231101056517527 14.441823210797638 24.01995151115414 2 14.218822133252498 22.68392999172357 40.67573243295199 22.421515442071943 3 16.773989161109213 28.397565870119173 31.598491697463803 23.229953271307814 4 11.866437972038078 19.71201275445125 40.1034251502879 28.31812412322277 5 12.129441859071791 39.110846712799614 36.14750169644729 12.6122097316813 6 27.41184062105038 40.252630995331685 19.645906116471153 12.689622267146778 7 24.35534098810187 34.09344773575716 24.671660514165332 16.879550761975644 8 23.990777770786178 36.397163105799315 22.169816323913132 17.44224279950137 9 25.799477590199505 16.083541579511063 21.55243987214944 36.56454095813999 10-11 23.152378182177852 27.238560687992024 30.044801992761407 19.56425913706872 12-13 24.531108936556436 25.193835853281847 29.784234302178564 20.49082090798315 14-15 21.808550788936092 26.158650849726094 27.66393877323402 24.368859588103795 16-17 20.900601770289263 29.21491030058061 28.168000615318224 21.716487313811903 18-19 20.95828931498613 28.281037855832825 30.116621642418213 20.644051186762837 20-21 22.124510767988433 27.34806293428499 29.85789641631446 20.669529881412114 22-23 21.703594486257188 27.385815345440463 29.710640275575663 21.199949892726693 24-25 21.36806032476663 27.57310955868668 29.801387210692155 21.257442905854536 26-27 21.330005812044092 27.692049410509238 29.691015584713163 21.286929192733503 28-29 21.319776176625417 27.62334100462951 29.776068978386146 21.280813840358928 30-31 21.60929089491354 27.51915477356136 29.63584153755577 21.235712793969334 32-33 21.427989473437595 27.683723235751774 29.5476286935959 21.34065859721473 34-35 21.53502222422204 27.760949480054993 29.520849254913806 21.183179040809165 36-37 21.54941941086173 27.694457901872692 29.388985179346715 21.36713750791886 38-39 21.411122632304565 27.748673069813755 29.456443943337106 21.383760354544577 40-41 21.657803927871075 27.652724257441935 29.306275497451416 21.383196317235573 42-43 21.600891249275097 27.747442067101442 29.105963027398797 21.54570365622467 44-45 21.690472673344914 27.92730008953891 28.81080656394997 21.571420673166212 46-47 21.790806587250167 27.958619491963688 28.433014992005273 21.817558928780873 48-49 21.78914869858872 28.02785241147217 28.3724977572603 21.81050113267881 50-51 21.773516430978827 28.189984550889214 28.159627499755874 21.87687151837609 52-53 21.89804024337329 28.130280884301705 28.133981435815407 21.837697436509593 54-55 21.88700774598554 28.056537671963888 28.201393475149672 21.8550611069009 56-57 21.87808033469565 28.138699502005636 28.1146488840831 21.868571279215615 58-59 21.850342751359367 28.204911903343987 28.172755535764534 21.771989809532112 60-61 21.964192102907138 28.16975599465037 28.081328338789973 21.784723563652516 62-63 21.86393649940654 28.25691285471023 28.069452571264037 21.809698074619195 64-65 21.85098013815218 28.19518799279368 28.079763934369467 21.874067934684668 66-67 21.922733960203946 28.211427991887174 27.977726041372858 21.888112006536023 68-69 21.894652689361806 28.15406741994258 28.0374497936416 21.913830097054014 70-71 21.91822487563074 27.939661007774465 28.09221214794405 22.049901968650744 72-73 21.940230866128584 28.01300792469663 28.06468189549242 21.982079313682366 74-75 21.81108001137084 28.105430983046826 28.04215724250821 22.041331763074126 76-77 21.897741444337406 28.074750756006388 28.033708748496984 21.993799051159225 78-79 21.913045166788685 28.099721816253247 27.964193238285862 22.023039778672203 80-81 21.90674599983919 28.085032564123182 27.962330143925385 22.045891292112245 82-83 21.90955116075221 28.07254848079774 28.047945899838687 21.96995445861137 84-85 21.969421685175035 28.07462390053847 27.970435162668554 21.985519251617937 86-87 21.84692904877353 28.10786994489012 28.04788402789088 21.997316978445475 88-89 21.888790272923877 28.072520204621604 28.00904573114976 22.029643791304757 90-91 21.954038222998314 28.101058036679728 28.03222379762751 21.912679942694453 92-93 21.953193053121257 28.102866994842973 27.991847844200763 21.95209210783501 94-95 21.778547828189218 28.159869651931864 28.05071570383038 22.010866816048537 96-97 21.882169705387824 28.312647193657213 28.089327007801916 21.715856093153043 98-99 22.904401371472346 30.262185458649522 28.28272674801734 18.550686421860792 100 21.88080596439204 31.23749853934824 22.10840482271832 24.7732906735414 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2890.0 1 3042.0 2 5386.0 3 7747.0 4 9810.5 5 16492.0 6 22259.0 7 25721.0 8 27558.5 9 25752.5 10 21557.5 11 16995.5 12 17569.5 13 24841.5 14 43676.5 15 71010.5 16 93851.5 17 107234.0 18 109913.5 19 103043.0 20 91502.5 21 80673.0 22 75751.0 23 80593.0 24 95378.5 25 118843.5 26 149419.5 27 182881.0 28 216960.0 29 254948.0 30 292420.5 31 329334.0 32 371042.0 33 411901.5 34 452092.0 35 488549.0 36 523245.0 37 556216.5 38 578438.0 39 594738.5 40 611143.0 41 623710.5 42 630851.5 43 638631.0 44 646878.5 45 652723.5 46 650154.0 47 642380.0 48 633529.5 49 618078.5 50 597183.0 51 569175.0 52 535742.5 53 499713.0 54 460938.5 55 421151.0 56 383327.0 57 344577.0 58 305943.5 59 267635.0 60 224828.0 61 182563.0 62 143598.5 63 110249.5 64 84387.0 65 64076.0 66 47876.0 67 36646.0 68 28467.5 69 21439.5 70 16021.0 71 11846.5 72 8849.5 73 6692.0 74 4882.0 75 3542.5 76 2506.0 77 1725.0 78 1284.5 79 986.0 80 721.0 81 533.5 82 405.0 83 276.5 84 196.5 85 146.0 86 118.5 87 96.0 88 63.5 89 38.0 90 27.5 91 21.5 92 17.5 93 11.0 94 5.5 95 4.0 96 3.0 97 3.5 98 3.0 99 1.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007366119157518993 3 0.00982583032495908 4 0.21532233473701717 5 0.07833334135884595 6 0.0042947337844192 7 0.010086117220984486 8 4.555020680444607E-5 9 1.887079996184194E-4 10-11 2.4727255122413577E-4 12-13 1.0411475841016243E-4 14-15 0.0 16-17 0.0 18-19 8.459324120825698E-5 20-21 0.003985331894793489 22-23 0.011101120681925612 24-25 1.957714540552784E-5 26-27 7.187054024921764E-5 28-29 9.848461300618555E-4 30-31 0.0022989397624326156 32-33 0.0038859742619519787 34-35 0.014966646937954842 36-37 0.008782378923405805 38-39 0.004265153611494606 40-41 0.004021014122642815 42-43 0.002492587096843113 44-45 0.0036218212057494664 46-47 0.0013912408376668005 48-49 5.5932998420522045E-5 50-51 0.02481571264900185 52-53 1.0664412446862343E-5 54-55 0.0 56-57 0.01259412156651813 58-59 3.712015977681322E-4 60-61 2.899499671145354E-4 62-63 4.7742909539510753E-4 64-65 5.559247833021985E-4 66-67 1.2418728827948974E-4 68-69 0.0011050621720889396 70-71 0.0 72-73 1.4318386743495775E-4 74-75 1.1714465525753217E-5 76-77 1.1821988283463852E-5 78-79 0.0 80-81 3.61823459981863E-5 82-83 0.0 84-85 4.516020171009368E-5 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 8.72149358019579E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 7703.0 20-21 15116.0 22-23 16642.0 24-25 17853.0 26-27 21876.0 28-29 30672.0 30-31 48587.0 32-33 56111.0 34-35 68874.0 36-37 87296.0 38-39 110091.0 40-41 112580.0 42-43 130068.0 44-45 157538.0 46-47 150194.0 48-49 130484.0 50-51 114316.0 52-53 104682.0 54-55 107238.0 56-57 112253.0 58-59 115195.0 60-61 115204.0 62-63 108529.0 64-65 112797.0 66-67 118810.0 68-69 122608.0 70-71 124449.0 72-73 116703.0 74-75 115213.0 76-77 121066.0 78-79 126763.0 80-81 132209.0 82-83 127822.0 84-85 125588.0 86-87 129658.0 88-89 140266.0 90-91 149590.0 92-93 157539.0 94-95 180619.0 96-97 488977.0 98-99 945035.0 100-101 9892844.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.82188257101632 #Duplication Level Percentage of deduplicated Percentage of total 1 88.88654361370614 74.50637420931596 2 7.632924444126879 12.796121928580865 3 1.952228584535648 4.909184254941853 4 0.7059769768416941 2.367052770026624 5 0.32600736314306417 1.3663275455332298 6 0.16662338464642834 0.838001146885092 7 0.09803793167844427 0.5752406797659113 8 0.061888078916198984 0.41500602267675374 9 0.0397347066362177 0.29975741222893404 >10 0.12587702535179676 1.5906717546359552 >50 0.0031086291111671674 0.16828743155252113 >100 0.0010083726497178867 0.1429108368352733 >500 4.0888656582882626E-5 0.025064007020948454 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.507172400635152E-6 0.0 2 0.0 1.3014344801270304E-5 0.0 6.507172400635152E-6 0.0 3 0.0 1.9521517201905457E-5 0.0 6.507172400635152E-6 0.0 4 0.0 7.808606880762183E-5 0.0 6.507172400635152E-6 0.0 5 0.0 7.808606880762183E-5 0.0 6.507172400635152E-6 0.0 6 0.0 8.459324120825698E-5 0.0 1.9521517201905457E-5 1.3014344801270304E-5 7 0.0 8.459324120825698E-5 0.0 3.253586200317576E-5 1.3014344801270304E-5 8 6.507172400635152E-6 8.459324120825698E-5 0.0 3.253586200317576E-5 1.9521517201905457E-5 9 6.507172400635152E-6 1.3014344801270304E-4 0.0 8.459324120825698E-5 3.253586200317576E-5 10-11 2.6028689602540607E-5 1.3014344801270304E-4 0.0 1.2038268941175032E-4 3.253586200317576E-5 12-13 2.6028689602540607E-5 1.3014344801270304E-4 0.0 1.4315779281397336E-4 3.253586200317576E-5 14-15 4.229662060412849E-5 1.724400686168315E-4 0.0 1.496649652146085E-4 4.555020680444606E-5 16-17 7.483248260730425E-5 1.8220082721778425E-4 0.0 1.496649652146085E-4 5.856455160571637E-5 18-19 9.43539998092097E-5 2.0497593062000728E-4 0.0 1.5942572381556124E-4 6.181813780603394E-5 20-21 1.0411475841016243E-4 2.277510340222303E-4 0.0 1.9196158581873699E-4 6.507172400635152E-5 22-23 1.1062193081079759E-4 2.6679406842604125E-4 0.0 2.0822951682032486E-4 6.83253102066691E-5 24-25 1.1387551701111517E-4 3.0258351662953455E-4 0.0 2.3751179262318305E-4 7.808606880762183E-5 26-27 1.333970342130206E-4 3.253586200317576E-4 0.0 3.1234427523048726E-4 7.808606880762183E-5 28-29 1.7894724101746667E-4 3.253586200317576E-4 0.0 4.587556542447782E-4 8.13396550079394E-5 30-31 1.887079996184194E-4 3.774159992368388E-4 0.0 9.760758600952729E-4 8.784682740857456E-5 32-33 1.887079996184194E-4 3.936839302384267E-4 0.0 0.0020172234441968974 1.0411475841016243E-4 34-35 1.887079996184194E-4 4.4248772324319036E-4 0.0 0.003292629234721387 1.0411475841016243E-4 36-37 1.887079996184194E-4 4.8803793004763643E-4 0.0 0.005173202058504946 1.0411475841016243E-4 38-39 1.887079996184194E-4 5.335881368520825E-4 0.0 0.008475592051827286 1.3014344801270304E-4 40-41 1.9521517201905457E-4 6.019134470587515E-4 0.0 0.012253005630395991 1.3014344801270304E-4 42-43 1.9521517201905457E-4 6.279421366612921E-4 0.0 0.015421998589505312 1.3339703421302062E-4 44-45 1.9521517201905457E-4 7.027746192685964E-4 0.0 0.018971661134051784 1.366506204133382E-4 46-47 1.9521517201905457E-4 7.483248260730425E-4 0.0 0.022866203815831924 1.3990420661365576E-4 48-49 1.9521517201905457E-4 7.515784122733601E-4 0.0 0.026484191670585067 1.496649652146085E-4 50-51 1.9521517201905457E-4 8.622003430841577E-4 0.0 0.030219308628549647 1.496649652146085E-4 52-53 1.9521517201905457E-4 8.654539292844752E-4 0.0 0.03416916227573519 1.6593289621619637E-4 54-55 1.9521517201905457E-4 8.719611016851103E-4 0.0 0.03769604971687944 1.8220082721778425E-4 56-57 1.9521517201905457E-4 8.784682740857455E-4 0.0 0.04130753039923195 1.9196158581873699E-4 58-59 1.9521517201905457E-4 8.817218602860631E-4 0.0 0.044997097150392074 2.0172234441968973E-4 60-61 1.9521517201905457E-4 8.882290326866983E-4 0.0 0.04888187907357126 2.0822951682032486E-4 62-63 1.9521517201905457E-4 8.97989791287651E-4 0.0 0.05252914920412727 2.2124386162159518E-4 64-65 1.9521517201905457E-4 0.0010086117220984485 0.0 0.05575996030104262 2.2124386162159518E-4 66-67 1.9521517201905457E-4 0.0010248796531000365 0.0 0.05916971863897544 2.2449744782191273E-4 68-69 1.9521517201905457E-4 0.0010574155151032122 0.0 0.06276167780412605 2.3425820642286547E-4 70-71 1.9521517201905457E-4 0.0010801906185054352 0.0 0.06595995303903822 2.4727255122413577E-4 72-73 1.9521517201905457E-4 0.0010866977909060704 0.0 0.06869947261970562 2.863155856279467E-4 74-75 1.9521517201905457E-4 0.0011159800667089287 0.0 0.07057353827108853 3.0258351662953455E-4 76-77 1.9521517201905457E-4 0.0011647838597136921 0.0 0.07251918281887845 3.0909068903016976E-4 78-79 1.9521517201905457E-4 0.0011843053769155978 0.0 0.07365468440278929 3.123442752304873E-4 80-81 1.9521517201905457E-4 0.0011843053769155978 0.0 0.07407114343642993 3.286122062320752E-4 82-83 1.9521517201905457E-4 0.0011843053769155978 0.0 0.07432817674625503 3.578944820349334E-4 84-85 1.9521517201905457E-4 0.0011875589631159152 0.0 0.07444855943566678 3.578944820349334E-4 86-87 1.9521517201905457E-4 0.001203826894117503 0.0 0.07450061681487186 3.578944820349334E-4 88 1.9521517201905457E-4 0.001281912962925125 0.0 0.0745071239872725 3.644016544355685E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 23465 0.0 51.76398 1 GTATCAA 44970 0.0 39.142 1 TCAACGC 55750 0.0 31.018576 4 ATCAACG 55955 0.0 30.898386 3 CAACGCA 56595 0.0 30.525074 5 TATCAAC 57735 0.0 30.187506 2 AACGCAG 58450 0.0 29.57402 6 ACGCAGA 66755 0.0 25.805178 7 CGCAGAG 67445 0.0 25.54477 8 GCAGAGT 77720 0.0 21.89635 9 GTACATG 55735 0.0 20.632174 1 TACATGG 55555 0.0 20.27271 2 GAGTACT 44685 0.0 19.796864 12-13 ACATGGG 56655 0.0 19.49839 3 AGAGTAC 71360 0.0 19.262623 10-11 CAGAGTA 76050 0.0 18.870317 10-11 AGTACTT 48465 0.0 17.639462 12-13 GTACTTT 50315 0.0 17.565477 14-15 CATGGGG 35555 0.0 17.25903 4 GTGGTAT 9730 0.0 16.082468 1 >>END_MODULE