##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139907_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 51564777 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.798265878275785 33.0 31.0 34.0 30.0 34.0 2 31.836209162700346 33.0 31.0 34.0 29.0 34.0 3 31.914636244814943 34.0 31.0 34.0 29.0 34.0 4 35.420727796418085 37.0 35.0 37.0 33.0 37.0 5 35.25935486931321 37.0 35.0 37.0 32.0 37.0 6 35.322473924399986 37.0 35.0 37.0 32.0 37.0 7 35.22739727934827 37.0 35.0 37.0 32.0 37.0 8 35.23481726683313 37.0 35.0 37.0 32.0 37.0 9 36.81294851716318 39.0 37.0 39.0 32.0 39.0 10-11 36.77461975642792 39.0 37.0 39.0 32.0 39.0 12-13 36.74401783023322 39.0 37.0 39.0 32.0 39.0 14-15 37.988279596360904 40.0 38.0 41.0 32.0 41.0 16-17 38.01439863688347 40.0 38.0 41.0 32.0 41.0 18-19 38.05241004920859 40.0 38.0 41.0 32.0 41.0 20-21 38.09673611756059 40.0 38.0 41.0 32.0 41.0 22-23 38.02356713303239 40.0 38.0 41.0 32.0 41.0 24-25 38.037407572711274 40.0 38.0 41.0 32.0 41.0 26-27 37.970990601533146 40.0 37.5 41.0 32.0 41.0 28-29 37.910366177353474 40.0 37.0 41.0 32.0 41.0 30-31 37.85336441505073 40.0 37.0 41.0 32.0 41.0 32-33 37.749326957795006 40.0 37.0 41.0 32.0 41.0 34-35 37.6642743966033 40.0 37.0 41.0 31.0 41.0 36-37 37.61421462055564 40.0 37.0 41.0 31.0 41.0 38-39 37.59368019814349 40.0 37.0 41.0 31.0 41.0 40-41 37.55222702044048 40.0 37.0 41.0 31.0 41.0 42-43 37.51568232047116 40.0 36.0 41.0 31.0 41.0 44-45 37.45560521300574 40.0 36.0 41.0 31.0 41.0 46-47 37.41370996667581 40.0 36.0 41.0 31.0 41.0 48-49 37.35385123123352 40.0 36.0 41.0 31.0 41.0 50-51 37.27081137437555 40.0 36.0 41.0 31.0 41.0 52-53 37.191667533501175 39.5 36.0 41.0 31.0 41.0 54-55 37.23591255152539 39.0 36.0 41.0 31.0 41.0 56-57 37.31511110983617 39.0 36.0 41.0 31.0 41.0 58-59 37.22123881071718 39.0 35.5 41.0 31.0 41.0 60-61 37.09199790801031 39.0 35.0 41.0 31.0 41.0 62-63 36.90805965231772 39.0 35.0 41.0 31.0 41.0 64-65 36.7067545840129 38.5 35.0 41.0 31.0 41.0 66-67 36.463183257404225 38.0 35.0 40.0 30.0 41.0 68-69 36.22196397080282 37.0 35.0 40.0 30.0 41.0 70-71 35.94220935254556 37.0 34.5 39.5 30.0 41.0 72-73 35.67442453246005 36.5 34.0 39.0 30.0 41.0 74-75 35.38675056922152 36.0 34.0 39.0 30.0 41.0 76-77 35.083452735815996 35.5 34.0 38.5 30.0 40.0 78-79 34.77381785261586 35.0 34.0 37.0 30.0 39.0 80-81 34.500502187715725 35.0 34.0 37.0 29.0 39.0 82-83 34.25154741276597 35.0 34.0 36.5 29.0 39.0 84-85 34.0306848397225 35.0 34.0 36.0 29.0 37.0 86-87 33.81969628454459 35.0 34.0 36.0 29.0 37.0 88-89 33.67982024632561 35.0 33.5 35.0 29.0 37.0 90-91 33.56881629797968 35.0 33.0 35.0 29.0 36.0 92-93 33.49010347152452 35.0 33.0 35.0 29.0 36.0 94-95 33.54298641696539 35.0 33.5 35.0 29.5 36.0 96-97 33.705292979919484 35.0 34.0 35.0 30.0 36.0 98-99 33.77970865482267 35.0 34.0 35.0 30.5 36.0 100 33.11365931127713 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 10.0 14 31.0 15 58.0 16 133.0 17 600.0 18 4999.0 19 24316.0 20 74259.0 21 162117.0 22 266000.0 23 364863.0 24 456431.0 25 542738.0 26 624362.0 27 703651.0 28 795698.0 29 910310.0 30 1054180.0 31 1239473.0 32 1495936.0 33 1857507.0 34 2420563.0 35 3286395.0 36 4958640.0 37 8978102.0 38 1.3209704E7 39 7745763.0 40 387934.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.45341260760228 20.981349342400918 14.35907305484905 24.206164995147752 2 14.438747005692882 22.521394488622626 40.44426639342235 22.59559211226214 3 16.96410228403162 27.903427846232653 31.53525558644155 23.59721428329418 4 11.985870754101894 19.680998679024256 39.79649108838983 28.536639478484023 5 12.280244236008391 38.802189162012574 36.20292311817539 12.714643483803648 6 27.793813709228083 40.04179905231175 19.47239872025432 12.691988518205852 7 24.561315659665652 33.830387695107405 24.477033819344644 17.131262825882295 8 23.96605487473197 36.456994179725825 22.070544970902894 17.506405974639307 9 25.64801011019403 16.088818239199 21.349550560754007 36.91362108985296 10-11 23.226259787658538 27.05368666871639 30.02077662381395 19.69927691981112 12-13 24.604039143077358 24.95294045447678 29.694577346185568 20.748443056260292 14-15 21.858095650669345 26.007550466343666 27.463512776418902 24.670841106568087 16-17 21.115262175194534 29.048946490189042 27.995686366893764 21.840104967722656 18-19 21.170887786962965 28.14108199048232 29.8576769659411 20.830353256613616 20-21 22.17760543647571 27.238722215488455 29.65832014911374 20.925352198922095 22-23 21.79907226699415 27.287201704665154 29.486738916033232 21.426987112307465 24-25 21.510254114109394 27.463348306527564 29.581220855696007 21.44517672366704 26-27 21.56332839087328 27.58390906291586 29.445579187240114 21.407183358970745 28-29 21.483771886612324 27.555932211225997 29.515367850797926 21.444928051363753 30-31 21.8375944692873 27.409738038942066 29.39290521401436 21.35976227775628 32-33 21.537165581135806 27.66528127879132 29.299936151245593 21.497616988827282 34-35 21.71853754977627 27.655873232277195 29.294260196044284 21.33132902190225 36-37 21.711073081166766 27.60672717403459 29.19749274009788 21.484707004700763 38-39 21.588660715924902 27.591128222995952 29.269166713759347 21.551044347319795 40-41 21.83436561621461 27.503505273697176 29.112245955221056 21.54988315486716 42-43 21.789903572297963 27.60670226449326 28.90765773145201 21.695736431756767 44-45 21.863447127087866 27.76645671740528 28.65061239885408 21.719483756652775 46-47 21.97349671224636 27.777011933104887 28.23708202986708 22.01240932478168 48-49 21.97709818887975 27.868308241033358 28.1887247214039 21.965868848682984 50-51 21.94099995236643 28.0093884914583 28.036034275186694 22.013577280988578 52-53 22.077194840307058 27.92523107739717 28.023958833394286 21.973615248901485 54-55 22.04738287378077 27.87236885059725 28.050892466628063 22.029355808993916 56-57 22.06332031715337 28.00240221324498 27.939592277201257 21.994685192400397 58-59 22.018865813692177 28.079697970547073 27.992386610594323 21.909049605166427 60-61 22.119760071196357 28.0952152316445 27.891541024484575 21.89348367267457 62-63 22.011052348529088 28.183259708233336 27.87161757598067 21.934070367256904 64-65 22.000987601983123 28.121948709255314 27.87137295590299 22.00569073285857 66-67 22.081005678833325 28.121123444298433 27.753400208589184 22.04447066827905 68-69 22.04397571536768 28.054152629864838 27.839499380492576 22.062372274274907 70-71 22.076340968760224 27.80463027669255 27.93075675201184 22.18827200253539 72-73 22.082958711203542 27.85408107189496 27.891004494729277 22.17195572217222 74-75 21.964374737212047 27.98045574712353 27.86382999481142 22.191339520853003 76-77 22.104178767331273 27.943925416328703 27.79618391696914 22.155711899370882 78-79 22.06631652987754 27.973635912545763 27.77279572459545 22.187251832981246 80-81 22.07284221943631 27.953703045002687 27.783883979305084 22.189570756255918 82-83 22.110288616770504 27.93029526570139 27.856735472311385 22.102680645216726 84-85 22.15226980866307 27.921127242590483 27.80757367408613 22.119029274660317 86-87 22.033152927551487 27.935160078631245 27.88888529121388 22.142801702603386 88-89 22.08631937173178 27.94230023305902 27.82697827039393 22.14440212481527 90-91 22.100602224158575 27.960229977859306 27.88626135819411 22.052906439788007 92-93 22.098911857208037 27.94541286379563 27.836983519017 22.118691759979328 94-95 21.950893430329423 28.024262751491193 27.888098537727924 22.136745280451457 96-97 22.029716434052077 28.155335955413346 27.93826069743063 21.876686913103946 98-99 23.06552946708204 30.093422274484382 28.151228980080656 18.68981927835292 100 22.093591300342748 31.15744501402688 21.872830917758808 24.87613276787156 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 11848.0 1 12296.0 2 19189.5 3 25835.5 4 32837.0 5 55868.0 6 75480.5 7 86515.5 8 90983.5 9 83317.5 10 68687.5 11 53886.0 12 56673.5 13 81685.0 14 145071.0 15 236454.0 16 312204.0 17 355710.5 18 365499.0 19 344592.0 20 307074.0 21 271231.5 22 252439.0 23 266072.5 24 313232.0 25 389330.0 26 491503.5 27 603241.5 28 714287.5 29 835035.5 30 953883.5 31 1071153.5 32 1200788.5 33 1321722.5 34 1440110.5 35 1554497.0 36 1666274.0 37 1771644.5 38 1847408.0 39 1909362.0 40 1979522.0 41 2037216.0 42 2073028.5 43 2114560.5 44 2164164.0 45 2207532.5 46 2216113.5 47 2203113.5 48 2180806.0 49 2131561.0 50 2070936.5 51 1982242.5 52 1865000.5 53 1739695.5 54 1605280.5 55 1470199.5 56 1339859.0 57 1203390.5 58 1064997.0 59 929051.5 60 779264.5 61 629886.5 62 497787.0 63 386988.5 64 296435.5 65 224610.5 66 169990.5 67 130888.0 68 102135.0 69 77763.5 70 59048.5 71 45204.5 72 33657.5 73 24762.0 74 18018.5 75 13103.0 76 9498.5 77 6687.5 78 4912.5 79 3673.5 80 2693.0 81 2030.5 82 1600.0 83 1144.5 84 805.5 85 600.5 86 464.5 87 361.0 88 238.0 89 142.5 90 97.5 91 80.0 92 61.0 93 35.5 94 15.5 95 9.5 96 8.5 97 6.0 98 4.5 99 9.0 100 30.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012648168729596175 3 0.005333097823733437 4 0.13333132420993501 5 0.062055926276962284 6 0.0027286067774519806 7 0.04082631832190412 8 4.654339918894636E-5 9 3.6458996031341317E-4 10-11 1.8423428845624603E-4 12-13 1.0181368572582017E-4 14-15 2.9089624493091474E-5 16-17 6.874847921867286E-4 18-19 2.1138460464979807E-4 20-21 0.004239667295675183 22-23 0.05084012641030472 24-25 6.710568502538487E-4 26-27 8.472058090974206E-5 28-29 0.001854177421741033 30-31 0.003138529715178917 32-33 0.003170850839154098 34-35 0.018456111820180716 36-37 0.007789314918913767 38-39 0.0034903647852554563 40-41 0.011893252459751796 42-43 0.00301345184679902 44-45 0.009487095952161847 46-47 0.002729730159674359 48-49 7.407683926983491E-4 50-51 0.03812700592125086 52-53 4.9767819884118286E-5 54-55 4.799535712113353E-5 56-57 0.006718935947519565 58-59 3.1738061725373974E-4 60-61 4.1394583292689644E-4 62-63 5.450704194643921E-4 64-65 0.004363276088875195 66-67 2.3283487044273033E-4 68-69 6.437455383210821E-4 70-71 3.990043814671129E-5 72-73 9.617599194146426E-4 74-75 4.64135894534215E-6 76-77 1.98983139971272E-5 78-79 3.544030012925314E-6 80-81 6.144008985189622E-4 82-83 0.0 84-85 2.9209599554767813E-5 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 3.22370567701275E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 26725.0 20-21 53216.0 22-23 58853.0 24-25 62800.0 26-27 76449.0 28-29 107875.0 30-31 167678.0 32-33 193901.0 34-35 237933.0 36-37 294746.0 38-39 366608.0 40-41 372100.0 42-43 431386.0 44-45 518361.0 46-47 495776.0 48-49 425766.0 50-51 370352.0 52-53 339580.0 54-55 348321.0 56-57 365178.0 58-59 375666.0 60-61 378335.0 62-63 359973.0 64-65 373239.0 66-67 392646.0 68-69 406135.0 70-71 408501.0 72-73 374444.0 74-75 370204.0 76-77 386352.0 78-79 408967.0 80-81 423788.0 82-83 410127.0 84-85 405130.0 86-87 419928.0 88-89 452229.0 90-91 487691.0 92-93 509220.0 94-95 583608.0 96-97 1647097.0 98-99 3242093.0 100-101 3.34358E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.57575474418151 #Duplication Level Percentage of deduplicated Percentage of total 1 86.68207395939896 68.11109384150735 2 8.5389377840293 13.419069621874218 3 2.3567749599842096 5.555561137288423 4 0.9789607600337671 3.076903223383632 5 0.4822193260941932 1.8945373750040906 6 0.28817947901375485 1.358635203917448 7 0.1830416908395976 1.006784730516076 8 0.1166276935796156 0.7331287237673142 9 0.07825986904011234 0.5534395448406867 >10 0.28595683447275205 3.509215842698416 >50 0.006490907359835466 0.347153102705957 >100 0.0023581277567205697 0.32075412957977895 >500 7.607848117564605E-5 0.04109345545088838 >1k 4.252991598065927E-5 0.07263006746577298 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.7150316193552043E-5 0.0 0.0 0.0 3 0.0 2.7150316193552043E-5 0.0 3.878616599078863E-6 0.0 4 0.0 8.145094858065614E-5 0.0 7.757233198157726E-6 1.9393082995394316E-6 5 7.757233198157726E-6 8.145094858065614E-5 0.0 1.163584979723659E-5 1.9393082995394316E-6 6 3.1028932792630906E-5 8.145094858065614E-5 0.0 1.163584979723659E-5 3.878616599078863E-6 7 3.1028932792630906E-5 8.339025688019557E-5 0.0 2.133239129493375E-5 3.878616599078863E-6 8 3.296824109217034E-5 1.0278333987558988E-4 0.0 2.133239129493375E-5 3.878616599078863E-6 9 3.296824109217034E-5 1.9780944655302203E-4 0.0 2.327169959447318E-5 5.817924898618295E-6 10-11 4.5573745039176646E-5 1.9780944655302203E-4 0.0 2.5211007894012612E-5 5.817924898618295E-6 12-13 6.399717388480124E-5 1.9974875485256148E-4 0.0 2.5211007894012612E-5 7.757233198157726E-6 14-15 7.466336953226812E-5 2.744121243848296E-4 0.0 2.9089624493091474E-5 1.7453774695854887E-5 16-17 1.0763161062443845E-4 2.821693575829873E-4 0.0 3.1028932792630906E-5 2.5211007894012612E-5 18-19 1.1829780627190534E-4 3.015624405783816E-4 0.0 3.781651184101892E-5 2.5211007894012612E-5 20-21 1.221764228709842E-4 3.335610275207822E-4 0.0 5.0422015788025224E-5 2.5211007894012612E-5 22-23 1.3187296436868137E-4 3.8786165990788634E-4 0.0 6.593648218434069E-5 3.393789524194005E-5 24-25 1.5417500981338483E-4 4.33435404947063E-4 0.0 9.599576082720186E-5 3.6846857691249206E-5 26-27 1.6290189716131227E-4 4.5379814209222703E-4 0.0 1.5708397226269397E-4 3.6846857691249206E-5 28-29 1.6968947620970028E-4 4.586464128410756E-4 0.0 4.033761263042018E-4 3.6846857691249206E-5 30-31 1.7453774695854886E-4 5.313704740738043E-4 0.0 0.0013507282306292141 3.6846857691249206E-5 32-33 1.8520394260601572E-4 5.410670155715014E-4 0.0 0.0031242256705580245 3.878616599078864E-5 34-35 2.133239129493375E-4 6.506379344954794E-4 0.0 0.005313704740738043 4.072547429032807E-5 36-37 2.3659561254381068E-4 7.514819660715298E-4 0.0 0.008471868306538007 4.5573745039176646E-5 38-39 2.433831915921987E-4 7.854198613134699E-4 0.0 0.01361879253351566 4.945236163825551E-5 40-41 2.6083696628805355E-4 8.600832308457379E-4 0.0 0.019575377975551023 5.2361324087564655E-5 42-43 2.6568523703690214E-4 8.833549304402112E-4 0.0 0.024856114475196894 5.52702865368738E-5 44-45 2.802300492834479E-4 9.871079244655708E-4 0.0 0.030829184037778345 5.9148903135952664E-5 46-47 2.9477486152999365E-4 0.0010666195647466876 0.0 0.03746355773050274 6.593648218434067E-5 48-49 3.0253209472815137E-4 0.001072437489645306 0.0 0.04389527370592527 7.175440708295898E-5 50-51 3.064107113272302E-4 0.0012140069955116843 0.0 0.050425894404624305 7.175440708295898E-5 52-53 3.180465611244668E-4 0.001221764228709842 0.0 0.05674997876942239 8.145094858065614E-5 54-55 3.2289483187331535E-4 0.001232430424357309 0.0 0.06235651906339089 9.308679837789272E-5 56-57 3.238644860230851E-4 0.0012605503947006307 0.0 0.06649694228290758 9.502610667743215E-5 58-59 3.238644860230851E-4 0.0012789738235462552 0.0 0.07070427163875836 9.599576082720186E-5 60-61 3.325913733710125E-4 0.0013061241397398073 0.0 0.07503377741748016 1.0181368572582017E-4 62-63 3.4325756901847944E-4 0.0013352137642328988 0.0 0.07919553302829177 1.0472264817512931E-4 64-65 3.451968773180189E-4 0.0014990853155439807 0.0 0.08309742132696511 1.0569230232489903E-4 66-67 3.5295411051617656E-4 0.0015213873609886842 0.0 0.08708948746156703 1.0763161062443845E-4 68-69 3.665292686129526E-4 0.0015853845348734854 0.0 0.09095258959424958 1.0860126477420817E-4 70-71 3.762258101106498E-4 0.0016338672423619714 0.0 0.09435995427654036 1.095709189239779E-4 72-73 3.965885472558138E-4 0.0016551996336569052 0.0 0.09719716231876654 1.163584979723659E-4 74-75 4.043457804539715E-4 0.001713378882643088 0.0 0.09940312550949265 1.163584979723659E-4 76-77 4.1695128440097785E-4 0.00180937464347029 0.0 0.10144521714890767 1.1732815212213562E-4 78-79 4.2276920929959613E-4 0.0018539787343596968 0.0 0.10284248877872584 1.1926746042167506E-4 80-81 4.314960966475236E-4 0.0018549483885094665 0.0 0.10332052827456231 1.2411573117052365E-4 82-83 4.344050590968327E-4 0.0018636752758573938 0.0 0.10360075832384576 1.3381227266822076E-4 84-85 4.411926381452207E-4 0.0018820987047030186 0.0 0.10367348238507848 1.357515809677602E-4 86-87 4.4701056304383906E-4 0.0019315510663412742 0.0 0.10371226855106927 1.3672123511752993E-4 88 4.4991952549314814E-4 0.002090574346903507 0.0 0.10371420785936881 1.3769088926729965E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 77270 0.0 50.46826 1 GTATCAA 141375 0.0 37.462326 1 TCAACGC 175435 0.0 29.662785 4 ATCAACG 176005 0.0 29.569496 3 CAACGCA 178380 0.0 29.166603 5 TATCAAC 182230 0.0 28.735922 2 AACGCAG 183875 0.0 28.353989 6 ACGCAGA 208505 0.0 24.945219 7 CGCAGAG 211760 0.0 24.561825 8 GCAGAGT 243220 0.0 21.110395 9 GAGTACT 144975 0.0 19.350306 12-13 GTACATG 162835 0.0 19.24577 1 AGAGTAC 221860 0.0 19.05135 10-11 TACATGG 161710 0.0 18.863953 2 CAGAGTA 237525 0.0 18.66988 10-11 ACATGGG 164390 0.0 18.154716 3 AGTACTT 157575 0.0 17.3942 12-13 CTTATAC 30585 0.0 17.121292 1 GTACTTT 164770 0.0 17.017542 14-15 CATGGGG 105380 0.0 16.100515 4 >>END_MODULE