##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139904_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11600696 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.65110851969572 33.0 33.0 33.0 33.0 33.0 2 32.67475908342051 33.0 33.0 33.0 33.0 33.0 3 32.579106374307194 33.0 33.0 33.0 33.0 33.0 4 36.54870638796155 37.0 37.0 37.0 37.0 37.0 5 36.600283638154124 37.0 37.0 37.0 37.0 37.0 6 36.60943395120431 37.0 37.0 37.0 37.0 37.0 7 36.588906562157995 37.0 37.0 37.0 37.0 37.0 8 36.58829030602991 37.0 37.0 37.0 37.0 37.0 9 36.59398461954352 37.0 37.0 37.0 37.0 37.0 10-11 36.5549283422305 37.0 37.0 37.0 37.0 37.0 12-13 36.524607316664444 37.0 37.0 37.0 37.0 37.0 14-15 38.569312694686595 40.0 37.0 40.0 37.0 40.0 16-17 38.51062660378308 40.0 37.0 40.0 37.0 40.0 18-19 38.513375921582636 40.0 37.0 40.0 37.0 40.0 20-21 38.53936323675876 40.0 37.0 40.0 37.0 40.0 22-23 38.58542595103174 40.0 37.0 40.0 37.0 40.0 24-25 38.61517696385788 40.0 37.0 40.0 37.0 40.0 26-27 38.321906307934945 40.0 37.0 40.0 37.0 40.0 28-29 38.28287159320241 40.0 37.0 40.0 37.0 40.0 30-31 38.292165893306105 40.0 37.0 40.0 37.0 40.0 32-33 38.283868858403864 40.0 37.0 40.0 37.0 40.0 34-35 38.10804976987441 40.0 37.0 40.0 37.0 40.0 36-37 38.15840421453784 40.0 37.0 40.0 37.0 40.0 38-39 38.08046794468418 40.0 37.0 40.0 37.0 40.0 40-41 38.07110077404196 40.0 37.0 40.0 35.0 40.0 42-43 38.013292439731515 40.0 37.0 40.0 33.0 40.0 44-45 37.92327435200224 40.0 37.0 40.0 33.0 40.0 46-47 37.83257314670112 40.0 37.0 40.0 33.0 40.0 48-49 37.59539676694977 40.0 37.0 40.0 33.0 40.0 50-51 37.68176336452952 40.0 37.0 40.0 33.0 40.0 52-53 37.64032292845589 40.0 37.0 40.0 33.0 40.0 54-55 33.15409152189058 37.0 33.0 40.0 10.5 40.0 56-57 36.29692393042154 37.0 35.0 40.0 30.0 40.0 58-59 37.06428208406882 37.0 37.0 40.0 33.0 40.0 60-61 37.08400237055636 37.0 37.0 40.0 33.0 40.0 62-63 36.83187991071395 37.0 37.0 40.0 33.0 40.0 64-65 31.982619561625405 37.0 33.0 40.0 8.5 40.0 66-67 34.9584522010634 37.0 33.0 40.0 27.0 40.0 68-69 35.79759406200633 37.0 33.0 37.0 33.0 40.0 70-71 35.69772251097872 37.0 33.0 37.0 33.0 40.0 72-73 35.07691018942728 37.0 33.0 37.0 27.0 40.0 74-75 35.08724197247659 37.0 33.0 37.0 27.0 40.0 76-77 33.27905651423686 35.0 33.0 37.0 27.0 37.0 78-79 34.87040336999691 37.0 33.0 37.0 33.0 37.0 80-81 35.12493764661622 37.0 33.0 37.0 33.0 37.0 82-83 35.07075225007256 37.0 33.0 37.0 33.0 37.0 84-85 34.94759090979404 37.0 33.0 37.0 33.0 37.0 86-87 34.83405101169036 37.0 33.0 37.0 33.0 37.0 88-89 34.73535683536569 37.0 33.0 37.0 33.0 37.0 90-91 34.62175177756876 37.0 33.0 37.0 33.0 37.0 92-93 34.5382864722394 37.0 33.0 37.0 33.0 37.0 94-95 34.475502013407365 37.0 33.0 37.0 33.0 37.0 96-97 34.43992483368157 37.0 33.0 37.0 33.0 37.0 98-99 34.416479838979896 37.0 33.0 37.0 33.0 37.0 100 34.374216716688224 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 8.0 20 78.0 21 404.0 22 1529.0 23 4449.0 24 10743.0 25 22122.0 26 39145.0 27 63626.0 28 94829.0 29 133897.0 30 182569.0 31 245473.0 32 327624.0 33 448254.0 34 643585.0 35 1049890.0 36 2000334.0 37 3059986.0 38 3181461.0 39 90687.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.91068363484398 19.960664429099772 14.495768184943387 23.632883751112864 2 14.854738026063263 20.54475007361627 41.49617402266209 23.104337877658377 3 18.97505099633692 24.959968856093305 29.940011256563707 26.124968891006066 4 12.743484870664707 17.541549181999805 38.2987771938963 31.41618875343919 5 13.742999044827581 37.45710496456016 35.20514308489741 13.594752905714852 6 31.00042445729118 37.1747953743465 18.26684364455374 13.557936523808573 7 27.4068211079749 32.34016303849355 22.14083534298287 18.11218051054868 8 24.808640791897314 36.8403585440046 20.489132721002257 17.861867943095827 9 25.436887579848655 17.130006682357678 20.96239742856808 36.470708309225586 10-11 24.658175681872883 26.784306734699364 28.2322672708603 20.32525031256745 12-13 25.283439890158316 24.05067764899623 28.64045398655391 22.02542847429154 14-15 22.203723811054097 25.686726037817042 26.332980366005625 25.776569785123236 16-17 21.919844292101097 28.85950980872182 27.013060250867703 22.207585648309376 18-19 21.894341511923077 27.941599366107 28.816477907877253 21.347581214092674 20-21 22.652683292038216 27.059023826030774 28.84139980005073 21.44689308188028 22-23 22.359918816568506 26.979180204243097 28.698769769710875 21.96213120947752 24-25 22.12505815932672 27.08539772356894 28.77613117088133 22.013412946223017 26-27 22.121481471766046 27.292771284048218 28.571742291404046 22.014004952781693 28-29 22.020391630066715 27.38319478084556 28.684839280237078 21.911574308850646 30-31 22.31982699085347 27.185179661266073 28.56476116675259 21.930232181127867 32-33 22.088751536255455 27.33453249432471 28.550774054552413 22.02594191486742 34-35 22.282778312880232 27.368593350756438 28.473348788592347 21.87527954777099 36-37 22.22745654258846 27.309016599340275 28.46216335171803 22.001363506353233 38-39 22.073949695719136 27.454125548330765 28.529523692185567 21.94240106376453 40-41 22.390253800817405 27.31165391587983 28.32019683453379 21.977895448768976 42-43 22.239187769118036 27.40983523538741 28.159995913277015 22.190981082217544 44-45 22.37054328822871 27.498934352074016 27.982442831634586 22.148079528062688 46-47 22.395187964297445 27.532295691807267 27.713904773367815 22.35861157052747 48-49 22.33837308542579 27.652594374849855 27.675547545575103 22.333484994149256 50-51 22.329889468105186 27.774442985253906 27.599524301550222 22.29614324509069 52-53 22.511073364241234 27.63413921700347 27.50002010936276 22.354767309392543 54-55 23.4302731127763 27.478928057050915 26.927607333671638 22.16319149650115 56-57 22.437282349306383 27.691268155906517 27.526784461913195 22.344665032873905 58-59 22.424132182318914 27.75772475482563 27.50885702555993 22.309286037295525 60-61 22.483222428310402 27.684794379610395 27.532264124577686 22.299719067501517 62-63 22.459511753512466 27.743118757555074 27.470690858904046 22.326678630028418 64-65 22.929996604764444 27.706327674624287 27.055382557647206 22.308293162964063 66-67 22.493597449635057 27.72970258344249 27.310228813279906 22.466471153642548 68-69 22.485582925755867 27.716601094348903 27.412784204640207 22.385031775255023 70-71 22.443229405164438 27.556824629086798 27.43267356857619 22.567272397172573 72-73 22.547714125928675 27.57266593007948 27.331489834982982 22.548130109008863 74-75 22.370864229700498 27.715182605236087 27.350733388592996 22.563219776470415 76-77 22.48520826146101 27.664819390832594 27.292169898669965 22.557802449036426 78-79 22.466911288673867 27.695994512006077 27.274119687138498 22.562974512181558 80-81 22.460535557290974 27.68936956760199 27.280542990129387 22.569551884977646 82-83 22.49660082478427 27.66173138620221 27.376881561373494 22.464786227640023 84-85 22.62978811062358 27.625912781147637 27.294807464868708 22.449491643360073 86-87 22.410578944714533 27.68157480727318 27.41502218940784 22.492824058604455 88-89 22.481170664526957 27.671164807083777 27.351652459008385 22.496012069380885 90-91 22.511342817725723 27.711181317753663 27.33736503486953 22.44011082965108 92-93 22.487439936598104 27.65770756859307 27.405889645735336 22.44896284907349 94-95 22.379457937374696 27.759850583233085 27.411511812625623 22.449179666766593 96-97 22.467209295074632 27.833163252837927 27.479665479333466 22.21996197275398 98-99 23.561722052184315 29.764885391523865 27.674187611579754 18.999204944712066 100 22.455364733453706 30.801912977462347 21.562742562110934 25.179979726973016 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1762.0 1 1661.5 2 2255.5 3 3170.5 4 4208.5 5 6893.5 6 9456.5 7 11428.0 8 13044.0 9 13378.0 10 12684.5 11 11734.5 12 12576.0 13 16409.0 14 26069.5 15 40050.5 16 52125.5 17 60251.0 18 63244.0 19 61255.0 20 56153.5 21 49675.5 22 44707.0 23 44390.5 24 49918.0 25 61207.0 26 77490.0 27 96975.0 28 118545.0 29 143633.0 30 169754.0 31 195375.0 32 223270.0 33 251752.0 34 280066.0 35 307115.5 36 336307.5 37 364129.5 38 385920.5 39 405429.5 40 424611.5 41 440723.0 42 452690.5 43 465135.0 44 475670.0 45 485356.5 46 491544.5 47 492412.5 48 491353.0 49 483981.5 50 472526.5 51 457829.5 52 438530.0 53 416853.5 54 394382.5 55 367851.5 56 337909.5 57 306583.5 58 272335.5 59 235969.0 60 197391.0 61 160670.0 62 127543.5 63 98187.5 64 73679.5 65 55239.0 66 41904.0 67 32237.5 68 24717.5 69 17676.0 70 12357.5 71 8845.0 72 6132.5 73 4229.5 74 2877.0 75 1926.0 76 1306.0 77 861.0 78 584.5 79 412.5 80 288.5 81 199.0 82 138.5 83 100.5 84 73.5 85 48.5 86 35.0 87 30.5 88 21.0 89 12.0 90 6.5 91 3.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.0030429208730234805 4 0.011292425902721698 5 0.015024960571331238 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.001595152529778264 26-27 0.03517172102196298 28-29 0.08255969935358155 30-31 0.0792912992399465 32-33 0.03475227341755761 34-35 7.505164138590448E-4 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.242013636453678 56-57 2.3299948390614314E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 5.26601553431564 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.008779443445677527 74-75 0.031074525865213705 76-77 0.004768623663540401 78-79 0.0 80-81 0.0 82-83 0.0033707985808989595 84-85 0.03693964926862828 86-87 0.03927209755836561 88-89 0.012354805812397236 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 163.0 20-21 604.0 22-23 1349.0 24-25 3613.0 26-27 6377.0 28-29 8845.0 30-31 20671.0 32-33 25926.0 34-35 36021.0 36-37 53279.0 38-39 63454.0 40-41 66861.0 42-43 79046.0 44-45 94290.0 46-47 92953.0 48-49 79634.0 50-51 71978.0 52-53 74942.0 54-55 72313.0 56-57 75106.0 58-59 77171.0 60-61 76537.0 62-63 80988.0 64-65 76263.0 66-67 80396.0 68-69 82497.0 70-71 82478.0 72-73 78001.0 74-75 79983.0 76-77 79272.0 78-79 84845.0 80-81 87446.0 82-83 85017.0 84-85 86588.0 86-87 93569.0 88-89 101221.0 90-91 109416.0 92-93 119136.0 94-95 149295.0 96-97 407216.0 98-99 739639.0 100-101 7816297.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.46903476011796 #Duplication Level Percentage of deduplicated Percentage of total 1 89.51936155906058 75.61614063235857 2 7.266264833067927 12.27548753521275 3 1.7502627743488954 4.43529021377452 4 0.6589548314895824 2.2264511426576488 5 0.31747208350684747 1.3408280228553486 6 0.15348162546445807 0.7778666853838029 7 0.09952347413955787 0.588465625757941 8 0.05971860226156032 0.4035498152205918 9 0.03851043281076736 0.29276451789479063 >10 0.13283047631745518 1.7379538149762432 >50 0.002702468803599294 0.1524527254836502 >100 8.473597605418054E-4 0.10314616283438854 >500 5.211205927521369E-5 0.02786266900560987 >1k 1.7366908897304353E-5 0.021740436584195055 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.620172444825725E-6 2 0.0 0.0 0.0 0.0 8.620172444825725E-6 3 0.0 0.0 0.0 0.0 8.620172444825725E-6 4 0.0 3.44806897793029E-5 0.0 8.620172444825725E-6 8.620172444825725E-6 5 0.0 5.172103466895435E-5 0.0 8.620172444825725E-6 8.620172444825725E-6 6 4.310086222412862E-5 5.172103466895435E-5 0.0 8.620172444825725E-6 1.724034488965145E-5 7 4.310086222412862E-5 5.172103466895435E-5 0.0 1.724034488965145E-5 1.724034488965145E-5 8 4.310086222412862E-5 6.034120711378007E-5 0.0 1.724034488965145E-5 1.724034488965145E-5 9 4.310086222412862E-5 1.6378327645168877E-4 0.0 1.724034488965145E-5 1.724034488965145E-5 10-11 5.172103466895434E-5 1.8102362134134021E-4 0.0 3.0170603556890038E-5 1.724034488965145E-5 12-13 6.034120711378007E-5 1.8102362134134021E-4 0.0 4.741094844654149E-5 1.724034488965145E-5 14-15 6.465129333619293E-5 2.1550431112064313E-4 0.0 6.0341207113780076E-5 1.724034488965145E-5 16-17 1.1206224178273442E-4 2.2412448356546883E-4 0.0 6.89613795586058E-5 2.5860517334477174E-5 18-19 1.1206224178273442E-4 2.49985000899946E-4 0.0 6.89613795586058E-5 4.310086222412862E-5 20-21 1.1206224178273442E-4 2.844656906792489E-4 0.0 8.189163822584439E-5 4.741094844654149E-5 22-23 1.2068241422756014E-4 2.973959493464875E-4 0.0 1.1637232800514727E-4 5.603112089136721E-5 24-25 1.2930258667238586E-4 3.189463804585518E-4 0.0 1.465429315620373E-4 7.758155200343152E-5 26-27 1.465429315620373E-4 3.2756655290337754E-4 0.0 2.284345697878817E-4 7.758155200343152E-5 28-29 1.5516310400686304E-4 3.2756655290337754E-4 0.0 7.327146578101865E-4 9.051181067067011E-5 30-31 1.594731902292759E-4 3.534270702378547E-4 0.0 0.0028662073379045533 1.0775215556032156E-4 32-33 1.6378327645168877E-4 3.534270702378547E-4 0.0 0.006378927609171036 1.2930258667238586E-4 34-35 1.7240344889651448E-4 4.0945819112922196E-4 0.0 0.01170188409385092 1.2930258667238586E-4 36-37 1.8102362134134021E-4 4.913498293550663E-4 0.0 0.020240164900450802 1.2930258667238586E-4 38-39 1.8102362134134021E-4 4.913498293550663E-4 0.0 0.030532650799572715 1.2930258667238586E-4 40-41 2.068841386758174E-4 5.258305191343692E-4 0.0 0.039161443416843265 1.2930258667238586E-4 42-43 2.155043111206431E-4 5.387607778016077E-4 0.0 0.048113492500794774 1.2930258667238586E-4 44-45 2.155043111206431E-4 6.034120711378007E-4 0.0 0.05567769382112935 1.2930258667238586E-4 46-47 2.155043111206431E-4 6.465129333619293E-4 0.0 0.06264710324277095 1.5085301778445018E-4 48-49 2.155043111206431E-4 6.551331058067551E-4 0.0 0.06902603085194199 1.7671353511892736E-4 50-51 2.155043111206431E-4 7.80125606256728E-4 0.0 0.07515928354643549 1.8102362134134021E-4 52-53 2.1981439734305595E-4 7.973659511463795E-4 0.0 0.08137442787915483 1.8102362134134021E-4 54-55 2.2412448356546883E-4 8.016760373687924E-4 0.0 0.08660687255316404 1.8102362134134021E-4 56-57 2.2412448356546883E-4 8.10296209813618E-4 0.0 0.09066266368845455 1.8102362134134021E-4 58-59 2.2412448356546883E-4 8.189163822584438E-4 0.0 0.09515377353220875 1.8102362134134021E-4 60-61 2.3274465601029457E-4 8.232264684808567E-4 0.0 0.09956299173773711 1.8964379378616592E-4 62-63 2.3274465601029457E-4 8.404668133705081E-4 0.0 0.10386445778770514 1.8964379378616592E-4 64-65 2.3274465601029457E-4 8.878777618170496E-4 0.0 0.10814006332033871 1.8964379378616592E-4 66-67 2.3274465601029457E-4 8.921878480394625E-4 0.0 0.1130277010965549 1.8964379378616592E-4 68-69 2.3274465601029457E-4 9.35288710263591E-4 0.0 0.11775155559631939 1.8964379378616592E-4 70-71 2.413648284551203E-4 9.611492275980682E-4 0.0 0.12188061819739092 2.068841386758174E-4 72-73 2.586051733447717E-4 9.740794862653068E-4 0.0 0.1251002526055333 2.4136482845512028E-4 74-75 2.586051733447717E-4 9.99940003599784E-4 0.0 0.12788025821898963 2.4136482845512028E-4 76-77 2.586051733447717E-4 0.0010473509520463255 0.0 0.13048786038354943 2.4567491467753313E-4 78-79 2.672253457895974E-4 0.0010602812107135642 0.0 0.13240153866630072 2.49985000899946E-4 80-81 2.672253457895974E-4 0.0010602812107135642 0.0 0.13304805159966265 2.542950871223589E-4 82-83 2.672253457895974E-4 0.0010602812107135642 0.0 0.1334747501356815 2.586051733447717E-4 84-85 2.672253457895974E-4 0.0010689013831583897 0.0 0.13366439392946766 2.586051733447717E-4 86-87 2.672253457895974E-4 0.0010861417280480412 0.0 0.13378938642991767 2.586051733447717E-4 88 2.758455182344232E-4 0.0011292425902721698 0.0 0.1338023166885849 2.586051733447717E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14280 0.0 49.60354 1 GTATCAA 25160 0.0 37.498238 1 TCAACGC 30040 0.0 30.92302 4 ATCAACG 30280 0.0 30.495386 3 CAACGCA 30970 0.0 29.990292 5 TATCAAC 31835 0.0 29.287302 2 AACGCAG 32020 0.0 29.000977 6 ACGCAGA 37275 0.0 24.923883 7 CGCAGAG 37950 0.0 24.469336 8 GTGGTAT 6675 0.0 22.693935 1 GCAGAGT 44610 0.0 20.797089 9 GTACATG 32475 0.0 20.73436 1 TGGTATC 6730 0.0 20.669754 2 TACATGG 32405 0.0 20.476282 2 GAGTACT 26200 0.0 20.236961 12-13 ACATGGG 32855 0.0 19.442545 3 CAGAGTA 42935 0.0 18.871365 10-11 GTACTTT 28925 0.0 18.360268 14-15 AGAGTAC 39885 0.0 18.218307 10-11 CATGGGG 25125 0.0 17.56054 4 >>END_MODULE