##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139903_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7037243 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.729232456517416 33.0 33.0 33.0 33.0 33.0 2 32.74418675040779 33.0 33.0 33.0 33.0 33.0 3 32.64736303691659 33.0 33.0 33.0 33.0 33.0 4 36.629779162095154 37.0 37.0 37.0 37.0 37.0 5 36.681736867690944 37.0 37.0 37.0 37.0 37.0 6 36.695299991772345 37.0 37.0 37.0 37.0 37.0 7 36.67966517569452 37.0 37.0 37.0 37.0 37.0 8 36.68295140582754 37.0 37.0 37.0 37.0 37.0 9 36.67918487396272 37.0 37.0 37.0 37.0 37.0 10-11 36.65297624367952 37.0 37.0 37.0 37.0 37.0 12-13 36.62792495583853 37.0 37.0 37.0 37.0 37.0 14-15 38.79003410852801 40.0 37.0 40.0 37.0 40.0 16-17 38.74916988087522 40.0 37.0 40.0 37.0 40.0 18-19 38.76560991285935 40.0 37.0 40.0 37.0 40.0 20-21 38.79012952948037 40.0 37.0 40.0 37.0 40.0 22-23 38.826239333636664 40.0 37.0 40.0 37.0 40.0 24-25 38.84673850224959 40.0 37.0 40.0 37.0 40.0 26-27 38.57006776629849 40.0 37.0 40.0 37.0 40.0 28-29 38.54203658009954 40.0 37.0 40.0 37.0 40.0 30-31 38.55263784205765 40.0 37.0 40.0 37.0 40.0 32-33 38.54868734271051 40.0 37.0 40.0 37.0 40.0 34-35 38.37762225185507 40.0 37.0 40.0 37.0 40.0 36-37 38.4399205202247 40.0 37.0 40.0 37.0 40.0 38-39 38.374272502088445 40.0 37.0 40.0 37.0 40.0 40-41 38.37792623088832 40.0 37.0 40.0 37.0 40.0 42-43 38.33386557335244 40.0 37.0 40.0 37.0 40.0 44-45 38.25820624814516 40.0 37.0 40.0 37.0 40.0 46-47 38.18026908193351 40.0 37.0 40.0 37.0 40.0 48-49 37.95071383076998 40.0 37.0 40.0 33.0 40.0 50-51 38.043796293929006 40.0 37.0 40.0 33.0 40.0 52-53 38.006597324033294 40.0 37.0 40.0 33.0 40.0 54-55 33.457313120756 38.5 33.0 40.0 10.5 40.0 56-57 36.66887601945819 37.0 35.0 40.0 30.0 40.0 58-59 37.45937075139876 38.5 37.0 40.0 33.0 40.0 60-61 37.49749039402591 38.5 37.0 40.0 33.0 40.0 62-63 37.26470011257764 37.0 37.0 40.0 33.0 40.0 64-65 32.37310698300293 37.0 33.0 40.0 8.5 40.0 66-67 35.4357597137782 37.0 33.0 40.0 30.0 40.0 68-69 36.29653830840003 37.0 37.0 40.0 33.0 40.0 70-71 36.21821292620639 37.0 37.0 38.5 33.0 40.0 72-73 35.58227507272373 37.0 37.0 37.0 33.0 40.0 74-75 35.63765431555251 37.0 35.0 37.0 33.0 40.0 76-77 33.82582123243247 35.0 33.0 37.0 30.0 37.0 78-79 35.34572884135646 37.0 33.0 37.0 33.0 37.0 80-81 35.54871877836375 37.0 33.0 37.0 33.0 37.0 82-83 35.48567067113844 37.0 33.0 37.0 33.0 37.0 84-85 35.36941694063735 37.0 33.0 37.0 33.0 37.0 86-87 35.26753108091782 37.0 33.0 37.0 33.0 37.0 88-89 35.18362166400449 37.0 33.0 37.0 33.0 37.0 90-91 35.088787153853886 37.0 33.0 37.0 33.0 37.0 92-93 35.02481384702865 37.0 33.0 37.0 33.0 37.0 94-95 34.975429149827505 37.0 33.0 37.0 33.0 37.0 96-97 34.943574579489805 37.0 33.0 37.0 33.0 37.0 98-99 34.90768290888492 37.0 33.0 37.0 33.0 37.0 100 34.862377081046844 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 35.0 21 159.0 22 591.0 23 1740.0 24 4200.0 25 8826.0 26 16113.0 27 26470.0 28 40806.0 29 59053.0 30 82493.0 31 114719.0 32 157655.0 33 219514.0 34 323698.0 35 539722.0 36 1142098.0 37 1809753.0 38 2396280.0 39 93314.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.30386814836435 19.928173575930234 14.134327889487402 23.633630386218012 2 14.766422020669173 20.635837074263318 41.60707538449361 22.990665520573895 3 18.84585553377551 25.253566068146437 30.057601070452815 25.84297732762524 4 12.527247636927457 17.444911382114977 38.63040564835093 31.397435332606634 5 13.390427575785743 37.67542068132766 35.41090884903908 13.523242893847517 6 30.677184232518336 37.506975387946675 18.322743722221897 13.493096657313098 7 27.122866156533178 32.547149501587484 22.413237684132834 17.916746657746508 8 24.737159140305373 36.86455050649807 20.650601378977534 17.747688974219024 9 25.417823428862697 16.992577917232644 21.105793845686442 36.48380480821822 10-11 24.525975584472498 26.876910460531207 28.372091172636782 20.22502278235951 12-13 25.191641101493868 24.221026615110492 28.794735381455496 21.792596901940147 14-15 22.1082389793844 25.79838439570724 26.558156368907536 25.535220256000823 16-17 21.65239284759671 29.00098092392148 27.220667241418266 22.125958987063544 18-19 21.59290222037238 28.02758125589808 29.21047347661577 21.169043047113764 20-21 22.404967064789076 27.146050130071824 29.246376352328845 21.20260645281025 22-23 22.13800394802915 27.08487836336918 29.085979593630544 21.691138094971127 24-25 21.869201759903902 27.14348367983861 29.216182945630877 21.771131614626615 26-27 21.86696204325914 27.390934850841482 28.9914335050966 21.750669600802773 28-29 21.726089229322028 27.520296382072797 29.083872156537854 21.669742232067325 30-31 22.077905876978953 27.327078196716307 28.9391834999434 21.655832426361336 32-33 21.805377428283343 27.454776302296818 28.92560691016387 21.814239359255968 34-35 21.976807582800507 27.549145686453226 28.86017457668033 21.613872154065938 36-37 21.952886727917356 27.459245101026692 28.841817358272685 21.746050812783267 38-39 21.81052567026401 27.59019680670733 28.886155783807677 21.713121739220988 40-41 22.06042630976195 27.45119812242891 28.722397398242894 21.765978169566246 42-43 21.943105425303198 27.57293692417277 28.512047798185048 21.971909852338985 44-45 22.114808795226406 27.703296370637215 28.275726086089907 21.906168748046476 46-47 22.12891239329055 27.702115859802586 27.998898897985637 22.170072848921237 48-49 22.093363663815037 27.88597156811904 27.89060150336188 22.13006326470405 50-51 22.086160115784683 27.98196151908579 27.830289739042556 22.10158862608697 52-53 22.24062957604926 27.871820503849786 27.719672446562114 22.16787747353884 54-55 23.182155661426336 27.72898544074106 27.11508917501978 21.97376972281283 56-57 22.196447100013653 27.95340513326499 27.700456750544344 22.149691016177012 58-59 22.17208048493514 27.982887664462808 27.700933969644037 22.144097880958018 60-61 22.26831795997363 27.929129367062455 27.699958308679424 22.102594364284496 62-63 22.228776744778607 27.964328956484707 27.654605703349212 22.15228859538748 64-65 22.689950978297908 27.9400375344302 27.25139079384534 22.118620693426553 66-67 22.26613097964452 27.98544116751769 27.487093704506204 22.26133414833159 68-69 22.240865639903404 27.98953515094278 27.57133727188597 22.198261937267844 70-71 22.187434105522843 27.778944604883172 27.625056778640396 22.408564510953592 72-73 22.33201383083047 27.806547819698235 27.53621688018838 22.325221469282912 74-75 22.110726528916764 27.95528338969494 27.552000391597947 22.38198968979035 76-77 22.255682536212678 27.89258103878618 27.484943073187374 22.36679335181377 78-79 22.23424904023537 27.959861780373686 27.469872459783655 22.336016719607294 80-81 22.1876709242462 27.964835988057335 27.507376569261965 22.340116518434503 82-83 22.26024561765486 27.887853761106125 27.59980181983936 22.252098801399658 84-85 22.414759569412897 27.85905249281946 27.478859413601054 22.24732852416659 86-87 22.181241792978998 27.892405332493514 27.5965498611311 22.329803013396393 88-89 22.32222930674386 27.845208877143595 27.532867512305927 22.29969430380662 90-91 22.326866078579396 27.89014965253573 27.585463903213782 22.19752036567109 92-93 22.313640357309374 27.878680732157115 27.60383170008125 22.203847210452263 94-95 22.173764042659577 27.958750843542735 27.602413253526358 22.26507186027133 96-97 22.28107912111879 27.99949349619399 27.667760692877007 22.051666689810215 98-99 23.341036204406333 29.973586096137012 27.87152651058888 18.81385118886778 100 22.2312707713267 31.028731826364 21.693628182253804 25.046369220055496 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1167.0 1 1078.0 2 1554.5 3 2329.0 4 3235.0 5 5362.5 6 7203.0 7 8482.5 8 9522.0 9 9598.0 10 8977.0 11 8228.0 12 8830.5 13 11716.0 14 18883.0 15 29050.0 16 37871.5 17 43806.5 18 45598.5 19 43567.5 20 39814.0 21 35429.5 22 32118.5 23 32062.5 24 35977.0 25 43843.0 26 54806.5 27 67778.5 28 81757.0 29 97315.0 30 113482.5 31 129541.0 32 147223.0 33 164306.0 34 181266.5 35 198132.5 36 215088.5 37 231718.0 38 243968.5 39 252640.0 40 262259.0 41 270679.0 42 275975.5 43 283216.0 44 289551.5 45 294244.5 46 297498.0 47 298266.5 48 297229.0 49 291655.5 50 284229.5 51 275533.5 52 263482.5 53 249484.5 54 235477.0 55 218880.5 56 200396.5 57 181577.5 58 160764.0 59 139673.0 60 117926.0 61 96071.5 62 76060.5 63 58991.0 64 44904.0 65 33860.0 66 25950.5 67 20301.0 68 15747.0 69 11459.5 70 8033.5 71 5805.5 72 4098.5 73 2736.5 74 1834.5 75 1294.0 76 864.0 77 541.5 78 372.5 79 264.5 80 185.5 81 137.5 82 98.0 83 63.5 84 36.0 85 22.0 86 16.5 87 13.0 88 9.0 89 6.5 90 5.5 91 3.5 92 1.5 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.0031404344002331597 4 0.012121224178275498 5 0.01644109774239713 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0017483030622238826 26-27 0.03554151432303831 28-29 0.0828427093329266 30-31 0.08079228434040682 32-33 0.0355992883568769 34-35 9.091557930082769E-4 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.2555669512421164 56-57 6.248720964927492E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 5.237474158371813 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.009358611121514244 74-75 0.03199405450899958 76-77 0.0049671814290898385 78-79 0.0 80-81 0.0 82-83 0.0038607334277796237 84-85 0.03863814757374266 86-87 0.041837730214937384 88-89 0.01410298215382464 90-91 9.267442926221053E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 111.0 20-21 309.0 22-23 801.0 24-25 2308.0 26-27 3996.0 28-29 6471.0 30-31 14591.0 32-33 18619.0 34-35 25772.0 36-37 38550.0 38-39 47177.0 40-41 48505.0 42-43 57872.0 44-45 68632.0 46-47 68311.0 48-49 59261.0 50-51 53222.0 52-53 54391.0 54-55 53277.0 56-57 55956.0 58-59 57131.0 60-61 55872.0 62-63 57634.0 64-65 55277.0 66-67 58852.0 68-69 60236.0 70-71 59186.0 72-73 55549.0 74-75 56968.0 76-77 57712.0 78-79 61166.0 80-81 61972.0 82-83 59124.0 84-85 59672.0 86-87 62783.0 88-89 67430.0 90-91 69347.0 92-93 72219.0 94-95 86540.0 96-97 229205.0 98-99 420439.0 100-101 4534797.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.67968198966196 #Duplication Level Percentage of deduplicated Percentage of total 1 89.8562888974258 76.98858257502634 2 7.195307176304784 12.32983261367453 3 1.7401417131758696 4.472843658055622 4 0.5719678342617833 1.960240885914611 5 0.25873629625219163 1.1084221791035374 6 0.12853781900522562 0.6607847673607475 7 0.07854278659436738 0.4710664684591097 8 0.04761326808187572 0.32635917341949067 9 0.030857050421564714 0.23794400405327665 >10 0.089613446238536 1.162169206645048 >50 0.0016261183964520897 0.0932085935048081 >100 6.409152008234241E-4 0.10112967748278935 >500 1.013430618729878E-4 0.05607064905774085 >1k 2.5335578840879505E-5 0.03134554824231654 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.421011040829484E-5 0.0 2 0.0 0.0 0.0 1.421011040829484E-5 0.0 3 0.0 0.0 0.0 1.421011040829484E-5 0.0 4 0.0 2.842022081658968E-5 0.0 1.421011040829484E-5 0.0 5 2.842022081658968E-5 2.842022081658968E-5 0.0 1.421011040829484E-5 0.0 6 2.842022081658968E-5 2.842022081658968E-5 0.0 1.421011040829484E-5 0.0 7 2.842022081658968E-5 2.842022081658968E-5 0.0 1.421011040829484E-5 0.0 8 2.842022081658968E-5 4.263033122488452E-5 0.0 1.421011040829484E-5 2.842022081658968E-5 9 2.842022081658968E-5 8.526066244976904E-5 0.0 2.842022081658968E-5 7.10505520414742E-5 10-11 2.842022081658968E-5 8.526066244976904E-5 0.0 7.10505520414742E-5 7.10505520414742E-5 12-13 4.263033122488452E-5 8.526066244976904E-5 0.0 8.526066244976904E-5 7.10505520414742E-5 14-15 4.973538642903194E-5 9.947077285806388E-5 0.0 9.947077285806388E-5 7.10505520414742E-5 16-17 6.394549683732677E-5 9.947077285806388E-5 0.0 9.947077285806388E-5 9.947077285806388E-5 18-19 7.10505520414742E-5 1.2078593847050613E-4 0.0 9.947077285806388E-5 1.492061592870958E-4 20-21 7.10505520414742E-5 1.2789099367465354E-4 0.0 9.947077285806388E-5 1.7052132489953808E-4 22-23 8.526066244976904E-5 1.9183649051198034E-4 0.0 1.1368088326635872E-4 2.1315165612442258E-4 24-25 1.0657582806221129E-4 2.557819873493071E-4 0.0 1.6341626969539064E-4 2.557819873493071E-4 26-27 1.3499604887880098E-4 2.6999209775760197E-4 0.0 3.339375945949287E-4 2.557819873493071E-4 28-29 1.421011040829484E-4 2.842022081658968E-4 0.0 0.0010586532254179657 2.6999209775760197E-4 30-31 1.492061592870958E-4 2.842022081658968E-4 0.0 0.003957515748710113 2.842022081658968E-4 32-33 1.5631121449124322E-4 2.842022081658968E-4 0.0 0.008185023595177827 3.1262242898248645E-4 34-35 1.6341626969539064E-4 3.481477050032236E-4 0.0 0.014409051954010967 3.694628706156658E-4 36-37 1.776263801036855E-4 4.1209320184055034E-4 0.0 0.024576385951145925 3.694628706156658E-4 38-39 1.847314353078329E-4 4.2630331224884516E-4 0.0 0.037045757834424646 3.836729810239607E-4 40-41 2.1315165612442258E-4 4.831437538820245E-4 0.0 0.0474830839293172 3.978830914322555E-4 42-43 2.1315165612442258E-4 4.90248809086172E-4 0.0 0.05765752298165631 4.191982570446978E-4 44-45 2.1315165612442258E-4 5.470892507193513E-4 0.0 0.06603438306734613 4.2630331224884516E-4 46-47 2.1315165612442258E-4 5.968246371483832E-4 0.0 0.07382152357109169 4.7603869867787713E-4 48-49 2.1315165612442258E-4 5.968246371483832E-4 0.0 0.08189286628300316 4.973538642903194E-4 50-51 2.2736176653271743E-4 6.394549683732678E-4 0.0 0.0893176489713372 4.973538642903194E-4 52-53 2.4157187694101226E-4 6.394549683732678E-4 0.0 0.09605324130486897 5.25774085106909E-4 54-55 2.4157187694101226E-4 6.394549683732678E-4 0.0 0.10219200900125233 5.541943059234987E-4 56-57 2.4157187694101226E-4 6.394549683732678E-4 0.0 0.10709449709211405 5.541943059234987E-4 58-59 2.4867693214515965E-4 6.465600235774152E-4 0.0 0.11263644015134905 5.612993611276461E-4 60-61 2.557819873493071E-4 6.536650787815627E-4 0.0 0.11804338716170523 6.039296923525307E-4 62-63 2.557819873493071E-4 6.536650787815627E-4 0.0 0.12299561063899599 6.252448579649729E-4 64-65 2.557819873493071E-4 7.673459620479214E-4 0.0 0.12791941389547012 6.323499131691203E-4 66-67 2.557819873493071E-4 7.673459620479214E-4 0.0 0.13344714684429684 6.536650787815625E-4 68-69 2.6999209775760197E-4 7.957661828645109E-4 0.0 0.13954328420945533 6.820852995981523E-4 70-71 2.6999209775760197E-4 8.099762932728058E-4 0.0 0.14476549978450368 7.46030796435479E-4 72-73 2.6999209775760197E-4 8.099762932728058E-4 0.0 0.14912089862464606 7.886611276603636E-4 74-75 2.6999209775760197E-4 8.241864036811007E-4 0.0 0.1526307958954949 8.028712380686585E-4 76-77 2.6999209775760197E-4 8.455015692935429E-4 0.0 0.1561122729455271 8.099762932728058E-4 78-79 2.842022081658968E-4 8.526066244976903E-4 0.0 0.15809458334748422 8.099762932728058E-4 80-81 2.842022081658968E-4 8.526066244976903E-4 0.0 0.15876956359187824 8.31291458885248E-4 82-83 2.842022081658968E-4 8.526066244976903E-4 0.0 0.1593805983394349 8.881319005184275E-4 84-85 2.842022081658968E-4 8.668167349059852E-4 0.0 0.1595440146091303 9.094470661308697E-4 86-87 2.842022081658968E-4 8.668167349059852E-4 0.0 0.15967190560280498 9.30762231743312E-4 88 2.842022081658968E-4 9.236571765391645E-4 0.0 0.1596790106580091 9.378672869474594E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9730 0.0 47.79808 1 GTATCAA 16930 0.0 35.305027 1 TCAACGC 20380 0.0 28.503618 4 ATCAACG 20420 0.0 28.366571 3 CAACGCA 20875 0.0 27.824759 5 TATCAAC 21425 0.0 27.251465 2 AACGCAG 21460 0.0 27.102093 6 GTGGTAT 4905 0.0 24.816612 1 TGGTATC 4750 0.0 23.85908 2 ACGCAGA 24770 0.0 23.429632 7 CGCAGAG 25240 0.0 23.009972 8 TACATGG 20665 0.0 20.616463 2 GTACATG 21150 0.0 20.500925 1 GCAGAGT 29350 0.0 19.7449 9 ACATGGG 21315 0.0 19.416685 3 GAGTACT 17890 0.0 19.363152 12-13 CAGAGTA 28505 0.0 18.254501 10-11 AGAGTAC 26450 0.0 17.554768 10-11 CATGGGG 16025 0.0 17.522505 4 GTACTTT 19790 0.0 17.51486 14-15 >>END_MODULE