##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139902_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12932744 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.718413895767206 33.0 33.0 33.0 33.0 33.0 2 32.732008922468424 33.0 33.0 33.0 33.0 33.0 3 32.634958056851666 33.0 33.0 33.0 33.0 33.0 4 36.61599116165912 37.0 37.0 37.0 37.0 37.0 5 36.67021708618063 37.0 37.0 37.0 37.0 37.0 6 36.6807959702906 37.0 37.0 37.0 37.0 37.0 7 36.66403664991745 37.0 37.0 37.0 37.0 37.0 8 36.666159169314724 37.0 37.0 37.0 37.0 37.0 9 36.66312647957773 37.0 37.0 37.0 37.0 37.0 10-11 36.63394384826607 37.0 37.0 37.0 37.0 37.0 12-13 36.60623151591031 37.0 37.0 37.0 37.0 37.0 14-15 38.758332454427304 40.0 37.0 40.0 37.0 40.0 16-17 38.71616963113165 40.0 37.0 40.0 37.0 40.0 18-19 38.73410553862351 40.0 37.0 40.0 37.0 40.0 20-21 38.7588837168591 40.0 37.0 40.0 37.0 40.0 22-23 38.79563336290812 40.0 37.0 40.0 37.0 40.0 24-25 38.81766895682999 40.0 37.0 40.0 37.0 40.0 26-27 38.54039907617691 40.0 37.0 40.0 37.0 40.0 28-29 38.50947389792904 40.0 37.0 40.0 37.0 40.0 30-31 38.51607797556535 40.0 37.0 40.0 37.0 40.0 32-33 38.50727826731026 40.0 37.0 40.0 37.0 40.0 34-35 38.3360307886407 40.0 37.0 40.0 37.0 40.0 36-37 38.394870803442686 40.0 37.0 40.0 37.0 40.0 38-39 38.327155885386 40.0 37.0 40.0 37.0 40.0 40-41 38.325312189915536 40.0 37.0 40.0 37.0 40.0 42-43 38.27310079968019 40.0 37.0 40.0 37.0 40.0 44-45 38.19235831525356 40.0 37.0 40.0 37.0 40.0 46-47 38.10973777991781 40.0 37.0 40.0 37.0 40.0 48-49 37.87590351316041 40.0 37.0 40.0 33.0 40.0 50-51 37.96712465556811 40.0 37.0 40.0 33.0 40.0 52-53 37.927089313140094 40.0 37.0 40.0 33.0 40.0 54-55 33.429287562620736 37.0 33.0 40.0 10.5 40.0 56-57 36.59704148334626 37.0 35.0 40.0 30.0 40.0 58-59 37.37942974770625 38.5 37.0 40.0 33.0 40.0 60-61 37.41421142995473 38.5 37.0 40.0 33.0 40.0 62-63 37.17788182798746 37.0 37.0 40.0 33.0 40.0 64-65 32.33781057278017 37.0 33.0 40.0 8.5 40.0 66-67 35.35889616757775 37.0 33.0 40.0 30.0 40.0 68-69 36.21236981354781 37.0 37.0 40.0 33.0 40.0 70-71 36.14079078760846 37.0 37.0 38.5 33.0 40.0 72-73 35.51166936003435 37.0 35.0 37.0 33.0 40.0 74-75 35.56253129611386 37.0 33.0 37.0 33.0 40.0 76-77 33.74212132194506 35.0 33.0 37.0 27.0 37.0 78-79 35.27687448163195 37.0 33.0 37.0 33.0 37.0 80-81 35.48875100795603 37.0 33.0 37.0 33.0 37.0 82-83 35.42599349447243 37.0 33.0 37.0 33.0 37.0 84-85 35.310821029963634 37.0 33.0 37.0 33.0 37.0 86-87 35.20955157255845 37.0 33.0 37.0 33.0 37.0 88-89 35.12600167393854 37.0 33.0 37.0 33.0 37.0 90-91 35.031698248767455 37.0 33.0 37.0 33.0 37.0 92-93 34.96402253809913 37.0 33.0 37.0 33.0 37.0 94-95 34.913854394328816 37.0 33.0 37.0 33.0 37.0 96-97 34.88257720339525 37.0 33.0 37.0 33.0 37.0 98-99 34.853865668046865 37.0 33.0 37.0 33.0 37.0 100 34.81072711293841 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 8.0 20 77.0 21 320.0 22 1237.0 23 3784.0 24 9165.0 25 18891.0 26 34402.0 27 55799.0 28 83954.0 29 120351.0 30 165161.0 31 225050.0 32 301967.0 33 417468.0 34 606329.0 35 1000850.0 36 2088716.0 37 3321974.0 38 4316886.0 39 160350.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.4857632688005 19.77100142088949 14.29682672138256 23.446408588927454 2 14.815316842272608 20.385178891656714 41.89947624417525 22.90002802189543 3 18.8999148182263 25.17709086612605 29.95375007036621 25.96924424528144 4 12.458000648356775 17.45448510697268 38.55021578897224 31.537298455698306 5 13.440298987639213 37.605471004831344 35.31436515395147 13.63986485357797 6 30.788013742481873 37.419924186236116 18.21766517608328 13.57439689519873 7 27.27687952378861 32.48145946444158 22.205032435498605 18.03662857627121 8 24.77715479406381 36.995404842158784 20.3544661519628 17.8729742118146 9 25.437787989926964 16.998295180048412 20.90518454552259 36.65873228450204 10-11 24.66259673894419 26.821894873972607 28.229465456054804 20.286042931028405 12-13 25.356819094230893 24.157282476170565 28.649384075026923 21.83651435457162 14-15 22.229590255555976 25.77077223518845 26.48915033035526 25.510487178900316 16-17 21.724299189715655 28.94884875166477 27.129385689533482 22.197466369086097 18-19 21.619507043516826 27.897583065125236 29.217913847208294 21.26499604414964 20-21 22.546553401286378 27.001974102374955 29.220275956778526 21.231196539560145 22-23 22.238686046352925 26.915740014311325 29.097491636746376 21.74808230258938 24-25 21.927140930394945 27.034760375340834 29.225790304195243 21.812308390068978 26-27 21.967948110408187 27.240263242107993 28.989708777398203 21.802079870085617 28-29 21.785457892496616 27.358959143874284 29.116276680466953 21.739306283162147 30-31 22.134081125936326 27.15403338818942 28.96598284137248 21.745902644501776 32-33 21.86787965553832 27.343210308696364 28.93241885295629 21.85649118280903 34-35 22.01166276096432 27.40078454553368 28.894071403889903 21.693481289612098 36-37 22.018714888481576 27.328421942886493 28.816098910488535 21.836764258143397 38-39 21.88941141602347 27.479853564205875 28.86708274359585 21.763652276174806 40-41 22.13515401005469 27.34792492386052 28.72010057696176 21.79682048912303 42-43 22.021793156184284 27.45231552284458 28.526695819792263 21.99919550117887 44-45 22.203124475302904 27.5797543602178 28.247892093436374 21.96922907104292 46-47 22.1881053206762 27.636897042292887 27.935057090550192 22.239940546480717 48-49 22.16968893457808 27.773202306692625 27.84555262572526 22.21155613300403 50-51 22.15111824944699 27.89623768181166 27.761269458531302 22.191374610210048 52-53 22.29088726012923 27.774324649769135 27.647815499821178 22.28697259028046 54-55 23.25162210060197 27.60826156368227 27.085699681661364 22.0544166540544 56-57 22.272574683110548 27.828563328138372 27.670834254968856 22.228027733782223 58-59 22.22394684886221 27.924890938544234 27.656239637420626 22.19492257517293 60-61 22.299040370646754 27.864144982710766 27.65135502729692 22.18545961934556 62-63 22.252596079114788 27.904213690903035 27.578636799590896 22.26455343039128 64-65 22.743922314292845 27.857637272005864 27.21839986338852 22.18004055031277 66-67 22.330363391123072 27.919074841512952 27.42012349301359 22.330438274350385 68-69 22.277340257999516 27.92295790381004 27.502056001000835 22.29764583718961 70-71 22.232202204396405 27.70706343666898 27.558251810335125 22.502482548599488 72-73 22.33007111384684 27.78112928873886 27.490189870653005 22.398609726761297 74-75 22.188820801201153 27.910291951954928 27.46382329705958 22.437063949784335 76-77 22.266206082266233 27.86992613742764 27.42837228468612 22.435495495620003 78-79 22.259512291822293 27.884994282592245 27.372454572689552 22.483038852895906 80-81 22.241119602073667 27.8775329600231 27.433917398361768 22.447430039541462 82-83 22.301644126352205 27.870824604710755 27.51710082969726 22.310430439239777 84-85 22.46982126718829 27.807442323358927 27.420254150309127 22.30248225914366 86-87 22.230883625135707 27.843221190576905 27.53412422647763 22.39177095780976 88-89 22.321891405382075 27.827956127355986 27.498588718644505 22.351563748617433 90-91 22.360246266876462 27.85946818517232 27.494191270899744 22.286094277051472 92-93 22.35919641045758 27.8107646528441 27.547207249082494 22.282831687615825 94-95 22.224034048074955 27.891224627807198 27.581595202397892 22.303146121719962 96-97 22.311681837258288 27.99988976681908 27.628493912279517 22.05993448364312 98-99 23.388836538528853 29.920647433159946 27.8071814114995 18.883334616811702 100 22.333698245021186 30.918192901000985 21.693706505401515 25.054402348576314 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2090.0 1 1959.5 2 2878.5 3 4260.0 4 5878.5 5 9825.5 6 13349.0 7 15860.0 8 17819.5 9 18081.5 10 17003.0 11 15675.5 12 16910.0 13 22394.0 14 36088.0 15 55609.0 16 72275.0 17 83063.0 18 86734.0 19 83474.0 20 76280.5 21 67450.5 22 60544.5 23 60461.0 24 67975.5 25 81536.5 26 101112.5 27 124693.0 28 148926.5 29 175697.5 30 203273.0 31 231410.5 32 263809.0 33 294923.5 34 324413.0 35 353629.5 36 385749.0 37 416611.5 38 436884.5 39 451674.0 40 467420.0 41 481764.0 42 492527.5 43 505540.0 44 516310.5 45 524781.5 46 531069.0 47 532124.0 48 530161.0 49 521252.5 50 509963.0 51 495302.0 52 474707.0 53 454950.5 54 433868.5 55 405368.5 56 374531.0 57 341954.0 58 306604.0 59 270016.5 60 228152.5 61 186828.0 62 149055.0 63 115535.5 64 88167.0 65 66771.5 66 51573.5 67 40344.5 68 31049.5 69 22563.5 70 16000.0 71 11572.0 72 8358.5 73 5985.5 74 4193.5 75 2884.5 76 1943.0 77 1304.0 78 880.0 79 592.0 80 404.0 81 275.5 82 192.0 83 131.5 84 89.0 85 62.0 86 42.5 87 33.0 88 25.0 89 15.5 90 10.0 91 5.5 92 3.5 93 2.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.5 99 2.0 100 2.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.003092924440474504 4 0.012309839273088525 5 0.0168255089561813 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0017440753162103295 26-27 0.03581176928632254 28-29 0.08359800680861 30-31 0.08128722507919953 32-33 0.035981924470341174 34-35 9.226289943363426E-4 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.2383411553364496 56-57 4.647787298324058E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 5.206288935065212 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.008817214570401815 74-75 0.030644223577552393 76-77 0.004652616532497029 78-79 0.0 80-81 0.0 82-83 0.003944913081995588 84-85 0.039137406767396216 86-87 0.042402249398233754 88-89 0.014059517254722145 90-91 9.888249432278518E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 169.0 20-21 587.0 22-23 1391.0 24-25 4070.0 26-27 7175.0 28-29 10825.0 30-31 24287.0 32-33 30956.0 34-35 43698.0 36-37 65827.0 38-39 80933.0 40-41 84881.0 42-43 100730.0 44-45 121106.0 46-47 119508.0 48-49 103115.0 50-51 92379.0 52-53 93729.0 54-55 90476.0 56-57 94614.0 58-59 96770.0 60-61 96436.0 62-63 99026.0 64-65 94231.0 66-67 99921.0 68-69 102705.0 70-71 102786.0 72-73 95312.0 74-75 97282.0 76-77 97320.0 78-79 103449.0 80-81 106302.0 82-83 101609.0 84-85 101627.0 86-87 107626.0 88-89 116270.0 90-91 123310.0 92-93 129182.0 94-95 155743.0 96-97 422605.0 98-99 790166.0 100-101 8522610.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.29708635007549 #Duplication Level Percentage of deduplicated Percentage of total 1 87.7851051389103 71.36673272728446 2 7.96335944691754 12.94795841185489 3 2.241462275605527 5.466730565110177 4 0.8670991275569365 2.819705305882856 5 0.4289334302782103 1.743551905988087 6 0.2264777559810961 1.1047189010619898 7 0.1476960926540098 0.8405083398643249 8 0.08672676537006027 0.5640506666522022 9 0.06573487948277494 0.4809648756170664 >10 0.18284108829830112 2.2499906760432316 >50 0.0034626004522492477 0.1869703041416681 >100 0.0010302191228901195 0.1285323969634399 >500 3.559169849312475E-5 0.021946599092815555 >1k 3.558767153396739E-5 0.07763832444282394 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.73231110118626E-6 0.0 0.0 0.0 3 0.0 7.73231110118626E-6 0.0 0.0 0.0 4 0.0 3.86615555059313E-5 0.0 1.546462220237252E-5 0.0 5 0.0 3.86615555059313E-5 0.0 2.319693330355878E-5 0.0 6 0.0 3.86615555059313E-5 0.0 2.319693330355878E-5 7.73231110118626E-6 7 7.73231110118626E-6 4.639386660711756E-5 0.0 9.278773321423513E-5 7.73231110118626E-6 8 7.73231110118626E-6 5.412617770830382E-5 0.0 9.278773321423513E-5 7.73231110118626E-6 9 7.73231110118626E-6 1.546462220237252E-4 0.0 1.3918159982135268E-4 7.73231110118626E-6 10-11 6.572464436008322E-5 1.546462220237252E-4 0.0 1.3918159982135268E-4 7.73231110118626E-6 12-13 7.73231110118626E-5 1.546462220237252E-4 0.0 1.8944162197906338E-4 7.73231110118626E-6 14-15 7.73231110118626E-5 2.3583548858618095E-4 0.0 2.049062441814359E-4 1.1598466651779389E-5 16-17 8.892157766364199E-5 2.474339552379603E-4 0.0 2.3970164413677407E-4 1.546462220237252E-5 18-19 1.0052004431542139E-4 2.551662663391466E-4 0.0 3.0156013294626417E-4 1.546462220237252E-5 20-21 1.0052004431542139E-4 2.706308885415191E-4 0.0 3.440878440027886E-4 1.546462220237252E-5 22-23 1.1985082206838704E-4 2.8996166629448474E-4 0.0 3.7888324395812676E-4 1.546462220237252E-5 24-25 1.662446886755046E-4 3.324893773510092E-4 0.0 4.6007251052058247E-4 1.546462220237252E-5 26-27 1.7011084422609773E-4 3.479539995533817E-4 0.0 5.567263992854107E-4 1.546462220237252E-5 28-29 1.7011084422609773E-4 3.479539995533817E-4 0.0 0.0012217051539874292 1.546462220237252E-5 30-31 1.817093108778771E-4 3.7888324395812676E-4 0.0 0.003425413817825513 1.546462220237252E-5 32-33 1.8557546642847025E-4 3.86615555059313E-4 0.0 0.0069668123021688205 3.86615555059313E-5 34-35 2.049062441814359E-4 4.4847404386880304E-4 0.0 0.012193854606570732 4.639386660711756E-5 36-37 2.319693330355878E-4 5.103325326782931E-4 0.0 0.021066681595181963 5.0260022157710694E-5 38-39 2.3583548858618095E-4 5.296633104312589E-4 0.0 0.031629018559402394 6.185848880949008E-5 40-41 2.590324218897397E-4 5.721910214877832E-4 0.0 0.040992847302938965 6.185848880949008E-5 42-43 2.6289857744033287E-4 5.915217992407489E-4 0.0 0.05040306991308263 6.572464436008322E-5 44-45 2.7836319964270537E-4 6.417818213984596E-4 0.0 0.05818177488087602 7.345695546126947E-5 46-47 2.9382782184507786E-4 6.727110658032047E-4 0.0 0.06550040733814881 8.118926656245574E-5 48-49 2.9382782184507786E-4 6.727110658032047E-4 0.0 0.07256773968463305 8.505542211304887E-5 50-51 2.9769397739567104E-4 7.848295767704054E-4 0.0 0.0794610950313406 8.505542211304887E-5 52-53 3.0156013294626417E-4 7.886957323209985E-4 0.0 0.08617660722272087 9.665388876482825E-5 54-55 3.0156013294626417E-4 7.886957323209985E-4 0.0 0.09199130517081294 1.0825235541660764E-4 56-57 3.0156013294626417E-4 8.041603545233711E-4 0.0 0.09697864583107807 1.0825235541660764E-4 58-59 3.0156013294626417E-4 8.157588211751504E-4 0.0 0.10215929426887287 1.0825235541660764E-4 60-61 3.092924440474504E-4 8.273572878269299E-4 0.0 0.10705771335147436 1.159846665177939E-4 62-63 3.092924440474504E-4 8.389557544787093E-4 0.0 0.11177828927874858 1.159846665177939E-4 64-65 3.092924440474504E-4 0.0010361296875589588 0.0 0.11683135458337379 1.159846665177939E-4 66-67 3.092924440474504E-4 0.001039995843109552 0.0 0.12255713095380222 1.159846665177939E-4 68-69 3.092924440474504E-4 0.001070925087514297 0.0 0.12810893032445397 1.159846665177939E-4 70-71 3.092924440474504E-4 0.0010979881763684488 0.0 0.1331001371402697 1.3531544427075956E-4 72-73 3.092924440474504E-4 0.0011057204874696351 0.0 0.13698948962416638 1.6237853312491145E-4 74-75 3.1702475514863666E-4 0.0011366497318743803 0.0 0.14020999719781047 1.6237853312491145E-4 76-77 3.1702475514863666E-4 0.0011637128207285321 0.0 0.14357355252682646 1.6237853312491145E-4 78-79 3.247570662498229E-4 0.0011753112873803115 0.0 0.1456960719241021 1.6237853312491145E-4 80-81 3.247570662498229E-4 0.0011791774429309046 0.0 0.14635331836770293 1.7011084422609773E-4 82-83 3.3635553290160234E-4 0.0011830435984814978 0.0 0.14689458014478596 1.8557546642847025E-4 84-85 3.4022168845219546E-4 0.0011830435984814978 0.0 0.14723480183323817 1.8557546642847025E-4 86-87 3.4022168845219546E-4 0.0012139728428862428 0.0 0.14730439263314885 1.8557546642847025E-4 88 3.4022168845219546E-4 0.0012912959538981055 0.0 0.14731599109980062 1.8557546642847025E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18215 0.0 50.95307 1 GTATCAA 33220 0.0 38.047966 1 TCAACGC 40530 0.0 30.726301 4 ATCAACG 40590 0.0 30.494255 3 TATCAAC 41710 0.0 29.999521 2 CAACGCA 41485 0.0 29.953703 5 AACGCAG 42865 0.0 29.034483 6 ACGCAGA 49265 0.0 25.219763 7 CGCAGAG 49745 0.0 24.959433 8 GTGGTAT 8385 0.0 24.73705 1 TGGTATC 8460 0.0 23.269392 2 GCAGAGT 57300 0.0 21.609571 9 GAGTACT 35430 0.0 20.186028 12-13 CAGAGTA 55670 0.0 19.382353 10-11 GTACATG 39545 0.0 19.271452 1 TACATGG 39330 0.0 18.882713 2 AGAGTAC 52160 0.0 18.715141 10-11 GTACTTT 39295 0.0 18.200945 14-15 ACATGGG 39655 0.0 18.16335 3 AGTACTT 38115 0.0 17.162964 12-13 >>END_MODULE