##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139901_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7388051 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71342022408887 33.0 33.0 33.0 33.0 33.0 2 32.70202818036854 33.0 33.0 33.0 33.0 33.0 3 32.70152398785552 33.0 33.0 33.0 33.0 33.0 4 36.62511885746322 37.0 37.0 37.0 37.0 37.0 5 36.64353711147906 37.0 37.0 37.0 37.0 37.0 6 36.56739307836397 37.0 37.0 37.0 37.0 37.0 7 36.61722259361772 37.0 37.0 37.0 37.0 37.0 8 36.62023976282784 37.0 37.0 37.0 37.0 37.0 9 36.62788711122866 37.0 37.0 37.0 37.0 37.0 10-11 36.590484757075984 37.0 37.0 37.0 37.0 37.0 12-13 36.562319751176595 37.0 37.0 37.0 37.0 37.0 14-15 38.64996668268803 40.0 37.0 40.0 37.0 40.0 16-17 38.5977971727591 40.0 37.0 40.0 37.0 40.0 18-19 38.625040013936015 40.0 37.0 40.0 37.0 40.0 20-21 38.64935483764836 40.0 37.0 40.0 37.0 40.0 22-23 38.5026556631078 40.0 37.0 40.0 37.0 40.0 24-25 38.658752469970935 40.0 37.0 40.0 37.0 40.0 26-27 38.44732359925122 40.0 37.0 40.0 37.0 40.0 28-29 38.43665816832097 40.0 37.0 40.0 37.0 40.0 30-31 38.415641718538495 40.0 37.0 40.0 37.0 40.0 32-33 38.4119875380587 40.0 37.0 40.0 37.0 40.0 34-35 38.32221681846114 40.0 37.0 40.0 37.0 40.0 36-37 33.282996543836354 40.0 37.0 40.0 8.5 40.0 38-39 37.24694122869379 40.0 37.0 40.0 33.0 40.0 40-41 37.826600381683235 40.0 37.0 40.0 33.0 40.0 42-43 38.03761642568975 40.0 37.0 40.0 33.0 40.0 44-45 38.04491833650884 40.0 37.0 40.0 33.0 40.0 46-47 37.940063999012715 40.0 37.0 40.0 33.0 40.0 48-49 37.91847153401491 40.0 37.0 40.0 33.0 40.0 50-51 37.87718188833395 40.0 37.0 40.0 33.0 40.0 52-53 37.80676792638256 40.0 37.0 40.0 33.0 40.0 54-55 37.721809958464064 40.0 37.0 40.0 33.0 40.0 56-57 37.646267350781756 40.0 37.0 40.0 33.0 40.0 58-59 37.500724572507615 40.0 37.0 40.0 33.0 40.0 60-61 37.311514520936 37.0 37.0 40.0 33.0 40.0 62-63 37.09004958955239 37.0 37.0 40.0 33.0 40.0 64-65 36.88099235752666 37.0 37.0 40.0 33.0 40.0 66-67 36.61142025855945 37.0 37.0 40.0 33.0 40.0 68-69 36.332361297562926 37.0 37.0 40.0 33.0 40.0 70-71 36.064999524344934 37.0 37.0 38.5 33.0 40.0 72-73 35.8082142220849 37.0 37.0 37.0 33.0 40.0 74-75 35.52529613970839 37.0 33.0 37.0 33.0 40.0 76-77 33.68065582988335 35.0 33.0 37.0 27.0 37.0 78-79 35.15074246923032 37.0 33.0 37.0 33.0 37.0 80-81 35.18419533111298 37.0 33.0 37.0 33.0 37.0 82-83 35.26099636621668 37.0 33.0 37.0 33.0 37.0 84-85 35.10993059590847 37.0 33.0 37.0 33.0 37.0 86-87 35.04069814938179 37.0 33.0 37.0 33.0 37.0 88-89 34.955617992059935 37.0 33.0 37.0 33.0 37.0 90-91 34.82008389992894 37.0 33.0 37.0 33.0 37.0 92-93 34.801833044671525 37.0 33.0 37.0 33.0 37.0 94-95 34.766759328497486 37.0 33.0 37.0 33.0 37.0 96-97 34.74414996812013 37.0 33.0 37.0 33.0 37.0 98-99 34.70499760841098 37.0 33.0 37.0 33.0 37.0 100 34.64808776351059 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 5.0 20 29.0 21 206.0 22 862.0 23 2331.0 24 5738.0 25 11587.0 26 21023.0 27 33737.0 28 50671.0 29 71960.0 30 99284.0 31 133202.0 32 178676.0 33 242952.0 34 340726.0 35 531829.0 36 1014311.0 37 2306880.0 38 2268729.0 39 73308.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.21519315445982 19.89065857829081 14.457845512977643 23.43630275427173 2 14.76383961074443 20.441872964872605 41.707806294244584 23.08648113013838 3 18.78375018256146 25.132841801410223 29.993450121231636 26.089957894796683 4 12.552587066394027 17.508391391133248 38.470225198608105 31.468796343864625 5 13.509000364538487 37.58458125384183 35.254228707358436 13.652189674261242 6 30.8517496698385 37.402557183213816 18.221558026602686 13.524135120345 7 27.354656864171623 32.4868358380309 22.14719416528121 18.011313132516275 8 24.831569246070444 36.740339231551054 20.442955794430766 17.98513572794774 9 25.435016623464023 17.16472991320715 20.99033967145056 36.40991379187826 10-11 24.681286038767194 26.78204982613141 28.15543639317054 20.381227741930854 12-13 25.399851733562752 24.10879405136754 28.579215276126273 21.912138938943436 14-15 22.274534921320928 25.658282542987322 26.45596924006074 25.611213295631014 16-17 21.79132223099164 28.8761474440282 27.12792589006221 22.20460443491795 18-19 21.716349819458475 27.96856031448619 29.048256434613133 21.266833431442205 20-21 22.60112975598478 27.028114493815526 29.038141277838996 21.332614472360696 22-23 22.31824350434878 26.938731553831563 28.872408435640097 21.87061650617956 24-25 22.092636158066398 27.019697534620974 28.98905153892469 21.89861476838794 26-27 22.015078930704647 27.133240222063197 28.930169393041805 21.921511454190355 28-29 21.895460565688946 27.369674996622408 28.93506850415105 21.7997959335376 30-31 22.217685450012535 27.191525194848293 28.796010434636433 21.79477892050274 32-33 21.97195609329366 27.31299404665662 28.761234336590253 21.95381552345947 34-35 22.17705065662155 27.41275635230678 28.670335827645964 21.73985716342571 36-37 22.359384613747476 27.24654365109687 28.519942353171217 21.874129381984435 38-39 21.972332505768442 27.41809723602127 28.75353134801637 21.856038910193913 40-41 22.331116892262738 27.307816220415344 28.502166249192406 21.858900638129512 42-43 22.15851257414077 27.42512422685349 28.333425208863705 22.082937990142035 44-45 22.27174893788054 27.556104118400338 28.083366616829704 22.08878032688942 46-47 22.352864962224597 27.554854162374408 27.808665509792718 22.283615365608274 48-49 22.309526064110194 27.692723421400334 27.78354550623493 22.214205008254538 50-51 22.2970977004815 27.81696538859349 27.639752200898414 22.246184710026593 52-53 22.46740086921353 27.701530743683893 27.52876199936939 22.302306387733182 54-55 22.36926078469765 27.650213509343686 27.6108927312681 22.36963297469057 56-57 22.41048100829067 27.780101965365546 27.50326340204635 22.306153624297433 58-59 22.358814773903752 27.86192338469673 27.505144825532472 22.274117015867045 60-61 22.43569827057283 27.73714284775138 27.574562454948243 22.25259642672755 62-63 22.404688200755622 27.80421390883383 27.47594830716451 22.315149583246033 64-65 22.360476866864488 27.77847285728842 27.481385167937322 22.379665107909766 66-67 22.447934570077525 27.82197028671036 27.341438116975525 22.388657026236586 68-69 22.413621447840693 27.828742165032615 27.379895219394523 22.377741167732168 70-71 22.377458521304753 27.576788236896434 27.475703591880617 22.5700496499182 72-73 22.42574658027697 27.61787251627663 27.472905014546246 22.483475888900152 74-75 22.306331151744487 27.78358647119022 27.383027040119508 22.527055336945782 76-77 22.410156018935222 27.736126720820593 27.322434336635755 22.531282923608437 78-79 22.38647860750705 27.784334196242604 27.269451914961714 22.559735281288635 80-81 22.493475494495588 27.767989243859304 27.240369305455815 22.498165956189293 82-83 22.416002791834806 27.76105242436218 27.431717552362116 22.3912272314409 84-85 22.56400708125816 27.68576115511176 27.333691376964552 22.416540386665528 86-87 22.372464308372642 27.7436165586843 27.39402793438284 22.489891198560215 88-89 22.449165141879362 27.736842809892792 27.33723753449307 22.47675451373478 90-91 22.474852937344245 27.73553169544829 27.369580900576178 22.420034466631282 92-93 22.486038791735556 27.729090469358496 27.374728783358794 22.410141955547154 94-95 22.331495627094274 27.83286165706028 27.399586878969227 22.43605583687622 96-97 22.410462013365397 27.931278017404704 27.477510967060926 22.180749002168973 98-99 23.516102899434145 29.833082295227236 27.664418763299736 18.98639604203888 100 22.438552708443133 30.863892981600245 21.526553109994737 25.171001199961886 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1202.0 1 1118.0 2 1583.0 3 2294.0 4 3154.0 5 5365.5 6 7353.0 7 8701.0 8 9777.0 9 9922.0 10 9422.5 11 8767.0 12 9390.5 13 12386.5 14 19541.5 15 29644.5 16 38667.5 17 44779.5 18 46805.0 19 44918.5 20 40899.5 21 36004.0 22 32452.0 23 32577.5 24 36450.5 25 44181.5 26 54932.5 27 67419.5 28 81026.0 29 96658.0 30 112455.0 31 128042.0 32 145521.5 33 162647.5 34 179460.5 35 195820.0 36 212960.5 37 229209.5 38 242458.0 39 254337.0 40 266749.5 41 276926.0 42 284383.0 43 292400.0 44 298507.0 45 305514.0 46 311744.0 47 315353.5 48 315779.5 49 311086.0 50 304312.0 51 293706.0 52 279049.0 53 264121.5 54 249438.5 55 231121.5 56 211589.5 57 191495.5 58 169868.5 59 148117.0 60 124228.5 61 101259.5 62 81087.5 63 63215.0 64 47739.0 65 35666.5 66 27302.0 67 21270.0 68 16366.5 69 11818.5 70 8167.0 71 5803.0 72 4080.0 73 2692.0 74 1807.0 75 1293.0 76 868.0 77 542.5 78 370.5 79 263.5 80 186.0 81 131.0 82 95.0 83 70.5 84 51.0 85 35.0 86 24.5 87 17.0 88 11.5 89 7.5 90 4.5 91 3.0 92 2.5 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.0017325272930573976 4 0.013751935388643093 5 0.008500212031562858 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0016451974047315605 26-27 0.03702031064551339 28-29 0.08492385991818793 30-31 0.08213752391183553 32-33 0.03741621876518866 34-35 0.0012810168766478186 36-37 7.422228346007426 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 7.353730621081381E-6 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.01145341476726944 74-75 0.033229545804242956 76-77 0.004604097198886448 78-79 0.0 80-81 0.0 82-83 0.003256157467775141 84-85 0.03890901996920152 86-87 0.04245926760487816 88-89 0.011615674195843317 90-91 1.7144163038247427E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 235.0 20-21 814.0 22-23 1147.0 24-25 2625.0 26-27 3619.0 28-29 6025.0 30-31 13326.0 32-33 16932.0 34-35 27232.0 36-37 33280.0 38-39 41322.0 40-41 45529.0 42-43 53335.0 44-45 64364.0 46-47 62515.0 48-49 55110.0 50-51 49142.0 52-53 47588.0 54-55 51455.0 56-57 53001.0 58-59 53202.0 60-61 52239.0 62-63 51025.0 64-65 53507.0 66-67 56780.0 68-69 57392.0 70-71 56917.0 72-73 54254.0 74-75 55315.0 76-77 55039.0 78-79 58653.0 80-81 59751.0 82-83 57908.0 84-85 57941.0 86-87 61742.0 88-89 67365.0 90-91 70381.0 92-93 75142.0 94-95 91378.0 96-97 255425.0 98-99 457110.0 100-101 4900989.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.66606414554394 #Duplication Level Percentage of deduplicated Percentage of total 1 91.09681919593498 79.86099595085855 2 6.420213054926875 11.256696190025561 3 1.5025634650907185 3.951714753401811 4 0.4769713940191461 1.672568192946879 5 0.2116437903750492 0.927698905151256 6 0.11058339906048748 0.5816646813281386 7 0.05549825389802672 0.34057194403330665 8 0.03506482125800991 0.24591958957253834 9 0.021524098458754304 0.16982396965441424 >10 0.06795338480719126 0.8908793493398549 >50 9.014371768930398E-4 0.054355604288633605 >100 2.4156016179367753E-4 0.03148299970851094 >500 2.2144832108558683E-5 0.015627869690575714 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.353536947701092E-5 2 0.0 0.0 0.0 0.0 1.353536947701092E-5 3 0.0 0.0 0.0 0.0 1.353536947701092E-5 4 0.0 1.353536947701092E-5 0.0 0.0 1.353536947701092E-5 5 0.0 1.353536947701092E-5 0.0 0.0 1.353536947701092E-5 6 4.060610843103276E-5 1.353536947701092E-5 0.0 0.0 1.353536947701092E-5 7 4.060610843103276E-5 1.353536947701092E-5 0.0 2.707073895402184E-5 1.353536947701092E-5 8 4.060610843103276E-5 2.707073895402184E-5 0.0 4.060610843103276E-5 1.353536947701092E-5 9 4.060610843103276E-5 8.121221686206552E-5 0.0 4.060610843103276E-5 4.060610843103276E-5 10-11 4.060610843103276E-5 8.121221686206552E-5 0.0 4.060610843103276E-5 4.060610843103276E-5 12-13 4.060610843103276E-5 8.121221686206552E-5 0.0 7.444453212356005E-5 4.060610843103276E-5 14-15 4.060610843103276E-5 1.9626285741665834E-4 0.0 1.4888906424712013E-4 5.414147790804368E-5 16-17 8.121221686206552E-5 2.1656591163217472E-4 0.0 2.3010128110918565E-4 5.414147790804368E-5 18-19 8.121221686206552E-5 2.368689658476911E-4 0.0 3.2484886744826207E-4 6.76768473850546E-5 20-21 8.121221686206552E-5 2.5717202006320745E-4 0.0 5.617178332959531E-4 6.76768473850546E-5 22-23 8.121221686206552E-5 2.9101044375573476E-4 0.0 7.309099517585895E-4 8.121221686206552E-5 24-25 8.121221686206552E-5 3.316165521867675E-4 0.0 9.204051244367426E-4 9.474758633907643E-5 26-27 8.121221686206552E-5 3.519196064022839E-4 0.0 0.0011166679818534009 9.474758633907643E-5 28-29 8.121221686206552E-5 3.586872911407894E-4 0.0 0.0014753552729941902 9.474758633907643E-5 30-31 8.121221686206552E-5 4.195964537873385E-4 0.0 0.0027003062106636787 9.474758633907643E-5 32-33 8.121221686206552E-5 4.195964537873385E-4 0.0 0.004967480598063008 1.0828295581608736E-4 34-35 8.121221686206552E-5 4.8050561643388765E-4 0.0 0.008344555282577232 1.2181832529309828E-4 36-37 8.121221686206552E-5 5.346470943419313E-4 0.0 0.01367072317178103 1.2181832529309828E-4 38-39 8.797990160057097E-5 5.549501485574477E-4 0.0 0.023808714910062208 1.3535369477010918E-4 40-41 9.474758633907643E-5 6.226269959425023E-4 0.0 0.032227714724763 1.6919211846263649E-4 42-43 9.474758633907643E-5 6.293946806810078E-4 0.0 0.0389141872464064 1.8272748793964741E-4 44-45 1.0828295581608735E-4 7.512130059741061E-4 0.0 0.04650076183827101 1.8949517267815286E-4 46-47 1.2181832529309828E-4 8.662636465286989E-4 0.0 0.05372864913899485 1.9626285741665834E-4 48-49 1.2181832529309828E-4 8.730313312672043E-4 0.0 0.06149795121879911 2.1656591163217472E-4 50-51 1.2858601003160373E-4 0.001015152710775819 0.0 0.06825210058782756 2.1656591163217472E-4 52-53 1.353536947701092E-4 0.0010286880802528298 0.0 0.0748708962620859 2.3010128110918565E-4 54-55 1.353536947701092E-4 0.0010354557649913353 0.0 0.0813069644484046 2.4363665058619655E-4 56-57 1.353536947701092E-4 0.0010692941886838627 0.0 0.08673464760868596 2.4363665058619655E-4 58-59 1.353536947701092E-4 0.0010828295581608736 0.0 0.09206758318262828 2.50404335324702E-4 60-61 1.353536947701092E-4 0.00110313261237639 0.0 0.09754264013607919 2.707073895402184E-4 62-63 1.6242443372413103E-4 0.0011369710360689172 0.0 0.10253719147309623 2.707073895402184E-4 64-65 1.6919211846263649E-4 0.0013129308392700592 0.0 0.10793103620968507 2.707073895402184E-4 66-67 1.7595980320114196E-4 0.00132646620874707 0.0 0.11337902242418196 2.707073895402184E-4 68-69 1.7595980320114196E-4 0.0013535369477010919 0.0 0.1189962007571415 2.707073895402184E-4 70-71 1.7595980320114196E-4 0.0013806076866551137 0.0 0.12390953987729647 2.7747507427872386E-4 72-73 1.8949517267815286E-4 0.0014076784256091357 0.0 0.12776712017824457 3.2484886744826207E-4 74-75 1.8949517267815286E-4 0.0014144461103476412 0.0 0.13061631545315538 3.2484886744826207E-4 76-77 1.8949517267815286E-4 0.0014618199035171793 0.0 0.13383096570394545 3.2484886744826207E-4 78-79 1.8949517267815286E-4 0.0014753552729941902 0.0 0.13582743270180458 3.2484886744826207E-4 80-81 1.8949517267815286E-4 0.0014753552729941902 0.0 0.13658541339251717 3.2484886744826207E-4 82-83 1.8949517267815286E-4 0.0014821229577326957 0.0 0.13702531290052006 3.3838423692527297E-4 84-85 1.8949517267815286E-4 0.0014888906424712011 0.0 0.13718096964950566 3.3838423692527297E-4 86-87 1.8949517267815286E-4 0.001515961381425223 0.0 0.13728925260532177 3.3838423692527297E-4 88 1.8949517267815286E-4 0.0016107089677642994 0.0 0.13730278797479878 3.3838423692527297E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13410 0.0 36.825058 1 GTATCAA 21375 0.0 31.93983 1 TCAACGC 23980 0.0 27.657337 4 ATCAACG 23985 0.0 27.616632 3 CAACGCA 24545 0.0 27.000336 5 AACGCAG 25220 0.0 26.342352 6 TATCAAC 26155 0.0 25.76257 2 ACGCAGA 29100 0.0 22.917343 7 CGCAGAG 29465 0.0 22.647821 8 GTACATG 21600 0.0 21.117167 1 TACATGG 21585 0.0 20.131168 2 GAGTACT 18885 0.0 20.067015 12-13 GCAGAGT 33585 0.0 19.730844 9 ACATGGG 21450 0.0 19.586555 3 AGAGTAC 27500 0.0 18.938654 10-11 CAGAGTA 30950 0.0 18.209337 10-11 GTACTTT 20910 0.0 18.064186 14-15 CATGGGG 16510 0.0 17.751163 4 AGTACTT 20245 0.0 17.317661 12-13 ACTTTTT 24165 0.0 15.763931 16-17 >>END_MODULE