##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139900_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20682267 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.68671006906545 33.0 33.0 33.0 33.0 33.0 2 32.69756149072053 33.0 33.0 33.0 33.0 33.0 3 32.59097931575876 33.0 33.0 33.0 33.0 33.0 4 36.57303577987848 37.0 37.0 37.0 37.0 37.0 5 36.632055373813714 37.0 37.0 37.0 37.0 37.0 6 36.655661393405275 37.0 37.0 37.0 37.0 37.0 7 36.63640165751656 37.0 37.0 37.0 37.0 37.0 8 36.642820344597624 37.0 37.0 37.0 37.0 37.0 9 36.637416343189074 37.0 37.0 37.0 37.0 37.0 10-11 36.60427761618202 37.0 37.0 37.0 37.0 37.0 12-13 36.57205037049371 37.0 37.0 37.0 37.0 37.0 14-15 38.645472447483634 40.0 37.0 40.0 37.0 40.0 16-17 38.597725626499255 40.0 37.0 40.0 37.0 40.0 18-19 38.63721435856137 40.0 37.0 40.0 37.0 40.0 20-21 38.67035209749109 40.0 37.0 40.0 37.0 40.0 22-23 38.71304525333705 40.0 37.0 40.0 37.0 40.0 24-25 38.728291224625664 40.0 37.0 40.0 37.0 40.0 26-27 38.43198529464452 40.0 37.0 40.0 37.0 40.0 28-29 38.3892935756663 40.0 37.0 40.0 37.0 40.0 30-31 38.38349290793126 40.0 37.0 40.0 37.0 40.0 32-33 38.36767381366862 40.0 37.0 40.0 37.0 40.0 34-35 38.19211786087176 40.0 37.0 40.0 37.0 40.0 36-37 38.25165218313796 40.0 37.0 40.0 37.0 40.0 38-39 38.185374853441814 40.0 37.0 40.0 37.0 40.0 40-41 38.19241720643846 40.0 37.0 40.0 37.0 40.0 42-43 38.14361846066171 40.0 37.0 40.0 37.0 40.0 44-45 38.06350992045316 40.0 37.0 40.0 33.0 40.0 46-47 37.97948758833045 40.0 37.0 40.0 33.0 40.0 48-49 37.75117961184186 40.0 37.0 40.0 33.0 40.0 50-51 37.8586240169283 40.0 37.0 40.0 33.0 40.0 52-53 37.83599419404524 40.0 37.0 40.0 33.0 40.0 54-55 33.38528577665462 37.0 33.0 40.0 10.5 40.0 56-57 36.511188223952786 37.0 35.0 40.0 30.0 40.0 58-59 37.31377891702783 37.0 37.0 40.0 33.0 40.0 60-61 37.35730913991347 37.0 37.0 40.0 33.0 40.0 62-63 37.131039880056164 37.0 37.0 40.0 33.0 40.0 64-65 32.34230321452143 37.0 33.0 40.0 8.5 40.0 66-67 35.32651733712584 37.0 33.0 40.0 30.0 40.0 68-69 36.177819845164045 37.0 37.0 40.0 33.0 40.0 70-71 36.10277136279091 37.0 37.0 38.5 33.0 40.0 72-73 35.47256558023479 37.0 35.0 37.0 33.0 40.0 74-75 35.543583497209134 37.0 33.0 37.0 33.0 40.0 76-77 33.70072431958461 35.0 33.0 37.0 27.0 37.0 78-79 35.24834863420303 37.0 33.0 37.0 33.0 37.0 80-81 35.47027585689571 37.0 33.0 37.0 33.0 37.0 82-83 35.41912252039636 37.0 33.0 37.0 33.0 37.0 84-85 35.310883809242256 37.0 33.0 37.0 33.0 37.0 86-87 35.21577445434381 37.0 33.0 37.0 33.0 37.0 88-89 35.14221464366053 37.0 33.0 37.0 33.0 37.0 90-91 35.057333245369996 37.0 33.0 37.0 33.0 37.0 92-93 34.99980814946274 37.0 33.0 37.0 33.0 37.0 94-95 34.95917631459943 37.0 33.0 37.0 33.0 37.0 96-97 34.93558396334714 37.0 33.0 37.0 33.0 37.0 98-99 34.90417761731008 37.0 33.0 37.0 33.0 37.0 100 34.7916343110024 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 1.0 14 0.0 15 0.0 16 6.0 17 4.0 18 14.0 19 57.0 20 168.0 21 688.0 22 2342.0 23 6579.0 24 15077.0 25 30339.0 26 54190.0 27 88189.0 28 133455.0 29 190974.0 30 264403.0 31 362559.0 32 492964.0 33 677975.0 34 981472.0 35 1586770.0 36 3226094.0 37 5197718.0 38 6995747.0 39 374478.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.2029031447334 20.548187620870483 14.026197908139833 23.222711326256288 2 14.986999731412395 21.937017053016195 41.143424088222446 21.932559127348963 3 17.701661567145415 27.170176697444308 31.621236766065426 23.50692496934485 4 12.507827129778393 18.878768646025627 39.19239059608045 29.421013628115528 5 12.805419903645983 38.174779860904515 35.84112265232356 13.178677583125939 6 28.68523207273323 38.42943514990089 19.203582431441507 13.681750345924378 7 25.254060652735056 33.76532339348116 23.941718958647954 17.038896995135833 8 24.430456508005456 35.83071119963354 21.872767713170308 17.866064579190695 9 26.024574578792546 16.15096642935709 21.571614949173608 36.25284404267675 10-11 24.055794950127805 26.62751750702752 29.357375540958618 19.959312001886058 12-13 25.27490337495401 24.908386493608266 29.06625032932802 20.7504598021097 14-15 22.419827383988828 25.912119052534116 27.384689911493975 24.28336365198308 16-17 21.24659527086544 28.727682204199905 28.0770377050634 21.94868481987125 18-19 21.24977900751632 27.73662912975511 30.217670313615802 20.795921549112766 20-21 22.299756755632234 26.9259763047256 30.08686932751453 20.68739761212763 22-23 22.064629675770828 26.860735342421897 29.93459756995862 21.14003741184865 24-25 21.716700867900865 27.078055153565945 29.998637207646695 21.2066067708865 26-27 21.583390640405135 27.268826081403695 29.84120286684045 21.306580411350716 28-29 21.46281633855348 27.40616301663714 29.862138740695855 21.268881904113524 30-31 21.821464266894303 27.20772462378785 29.709299668851635 21.26151144046621 32-33 21.484311774739442 27.473830792995425 29.67901014289579 21.36284728936934 34-35 21.64260747559849 27.586444388827346 29.672570363776696 21.09837777179747 36-37 21.7152910816613 27.50365939936405 29.51975697590108 21.26129254307357 38-39 21.568085952568964 27.52988720364221 29.478321248505974 21.423705595282854 40-41 21.776319035448804 27.410825139926164 29.369077918144615 21.443777906480413 42-43 21.72498918203692 27.567604196129235 29.028992858657894 21.678413763175953 44-45 21.847048828877384 27.743822502670053 28.741783364668255 21.66734530378431 46-47 21.951912459850416 27.80233603588405 28.314408862513936 21.9313426417516 48-49 21.911441339387817 28.05555645203801 28.080888356736907 21.952113851837268 50-51 21.97041791922108 28.106678205630992 27.913183815412385 22.009720059735542 52-53 22.116817277897024 27.90916276855305 27.821811934564643 22.152208018985284 54-55 23.052115698802282 27.769216067721075 27.295709529056484 21.882958704420155 56-57 22.06154315727142 28.021162974402603 27.81003833635024 22.107255531975735 58-59 22.022811134786803 28.105498150138324 27.769699573062763 22.10199114201211 60-61 22.163492592248023 27.991685451038734 27.767547345137693 22.077274611575547 62-63 22.07991138006352 28.041822707399678 27.737495643986946 22.140770268549854 64-65 22.543817156390066 28.00468752300855 27.380454580306363 22.07104074029503 66-67 22.204762526481197 28.066694260420793 27.549792160054597 22.17875105304341 68-69 22.165420077584827 28.01572896636627 27.620375501642076 22.198475454406825 70-71 22.150602978729825 27.779572065141316 27.66656188644468 22.403263069684183 72-73 22.32326856090131 27.783052614373904 27.559863792352974 22.33381503237181 74-75 22.092125250036286 27.89511392976078 27.58628451561156 22.42647630459138 76-77 22.158579614306507 27.77381222502189 27.603880252637197 22.463727908034407 78-79 22.241528877743775 27.832473257732037 27.52212397100794 22.403873893516245 80-81 22.276971444772567 27.755469841925873 27.539266279405634 22.42829243389593 82-83 22.314877139688342 27.63960192090544 27.644485060425637 22.40103587898058 84-85 22.451767701099858 27.59310675428229 27.54552351874046 22.409602025877394 86-87 22.222977671795565 27.62725064903342 27.664332099409688 22.48543957976133 88-89 22.33340026158106 27.540525469473188 27.60735595820935 22.518718310736404 90-91 22.434669642971272 27.473778491803834 27.64119936344637 22.450352501778525 92-93 22.48179818614417 27.34898358422172 27.6554183635925 22.51379986604161 94-95 22.339352515858977 27.33041932529862 27.776025916898984 22.55420224194342 96-97 22.430390147582134 27.44410640323859 27.823427499897274 22.302075949282003 98-99 23.503979668848025 29.397331797871463 27.987092668983344 19.11159586429716 100 30.01358078355964 40.69511263700505 29.291306579435307 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 12271.0 1 10652.5 2 12018.0 3 15763.0 4 19966.5 5 31058.5 6 41429.0 7 49354.5 8 55740.5 9 57369.0 10 54479.5 11 49568.5 12 51518.5 13 63503.0 14 93417.0 15 136732.5 16 173280.0 17 194797.0 18 201607.5 19 195751.0 20 180226.0 21 160270.0 22 144747.0 23 141924.0 24 153912.5 25 179790.0 26 216912.0 27 257584.0 28 299972.0 29 349495.5 30 399315.5 31 446962.0 32 497471.5 33 546811.5 34 593929.0 35 637477.5 36 683963.0 37 726343.5 38 759633.5 39 789077.0 40 816483.0 41 836382.5 42 844440.0 43 855825.5 44 870708.0 45 880259.5 46 883452.0 47 883367.5 48 875579.5 49 857219.0 50 835635.5 51 810193.0 52 775767.0 53 738435.5 54 698370.5 55 654601.0 56 607534.0 57 552802.5 58 493064.5 59 427861.0 60 362957.0 61 300242.5 62 238648.0 63 187424.0 64 147511.5 65 117862.5 66 94185.0 67 73672.5 68 57361.0 69 41339.0 70 28392.0 71 20680.0 72 14914.5 73 10709.0 74 7657.5 75 5411.5 76 3709.0 77 2450.0 78 1622.0 79 1084.0 80 751.0 81 528.0 82 357.0 83 237.0 84 173.0 85 137.5 86 110.5 87 79.5 88 56.5 89 42.0 90 26.5 91 14.5 92 8.5 93 4.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 2.417529954525778E-5 2 9.670119818103112E-6 3 0.0028381801666132636 4 0.012532475284261633 5 0.017033916059588632 6 4.835059909051556E-6 7 4.835059909051556E-6 8 4.835059909051556E-6 9 0.0 10-11 4.835059909051556E-6 12-13 0.0 14-15 1.208764977262889E-5 16-17 2.417529954525778E-5 18-19 1.208764977262889E-5 20-21 0.0 22-23 2.4178793863112627E-6 24-25 0.0017294634021718625 26-27 0.03546864140724232 28-29 0.08255177934041455 30-31 0.08075544801762995 32-33 0.0354455837476132 34-35 8.682601611579157E-4 36-37 7.413067696430726E-6 38-39 3.497645472509043E-5 40-41 1.5181173644389509E-5 42-43 2.562890973823477E-6 44-45 1.5612814686038007E-5 46-47 0.0 48-49 1.882612798695683E-5 50-51 4.094539980071055E-5 52-53 0.0 54-55 1.2312165105548025 56-57 5.1135561737781844E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 5.173141449629445 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.009181694889013381 74-75 0.03139288412351224 76-77 0.005095948991367039 78-79 0.0 80-81 0.0 82-83 0.004358142412347208 84-85 0.042186794793979035 86-87 0.04627187286368288 88-89 0.01552660424624769 90-91 1.4950292147396426E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 523.0 20-21 1702.0 22-23 4085.0 24-25 15222.0 26-27 21389.0 28-29 33050.0 30-31 84441.0 32-33 105791.0 34-35 135774.0 36-37 203111.0 38-39 254036.0 40-41 247813.0 42-43 281131.0 44-45 320536.0 46-47 310778.0 48-49 281250.0 50-51 250607.0 52-53 242123.0 54-55 229281.0 56-57 237860.0 58-59 251371.0 60-61 249706.0 62-63 248720.0 64-65 232531.0 66-67 244052.0 68-69 257219.0 70-71 259186.0 72-73 243302.0 74-75 239301.0 76-77 233051.0 78-79 249653.0 80-81 262812.0 82-83 253290.0 84-85 246678.0 86-87 246500.0 88-89 258012.0 90-91 272033.0 92-93 278898.0 94-95 297083.0 96-97 618456.0 98-99 3836050.0 100-101 8143860.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.97680246048974 #Duplication Level Percentage of deduplicated Percentage of total 1 87.49855401081396 71.72851677722988 2 8.66912110461767 14.213336565986106 3 2.1054078982886826 5.177838221302987 4 0.7628101678543361 2.5013095378019172 5 0.3618181922481062 1.483034923626725 6 0.19619271644996375 0.9649950936363332 7 0.11409591483515177 0.6547252790393069 8 0.0775963029570793 0.5088877439341444 9 0.04916836622433344 0.3627598900749478 >10 0.16084620175840006 2.0086148594539344 >50 0.003473906236270386 0.1901648388937616 >100 8.278000174984623E-4 0.1161924511953524 >500 3.2886942714386415E-5 0.017250909742679326 >1k 5.453075585734863E-5 0.07237290808195304 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.835059909051556E-6 0.0 2 0.0 1.9340239636206225E-5 0.0 4.835059909051556E-6 0.0 3 0.0 1.9340239636206225E-5 0.0 1.4505179727154669E-5 0.0 4 0.0 6.285577881767023E-5 0.0 1.4505179727154669E-5 0.0 5 0.0 7.252589863577334E-5 0.0 1.4505179727154669E-5 0.0 6 0.0 7.252589863577334E-5 0.0 3.384541936336089E-5 9.670119818103112E-6 7 0.0 7.73609585448249E-5 0.0 5.3185658999567115E-5 1.9340239636206225E-5 8 0.0 8.7031078362928E-5 0.0 5.8020718908618674E-5 2.417529954525778E-5 9 0.0 1.4988685718059824E-4 0.0 9.186613827197956E-5 3.384541936336089E-5 10-11 0.0 1.547219170896498E-4 0.0 1.0637131799913423E-4 3.384541936336089E-5 12-13 0.0 1.5955697699870136E-4 0.0 1.2087649772628891E-4 3.384541936336089E-5 14-15 0.0 1.95819926316588E-4 0.0 1.2812908758986623E-4 4.593306913598978E-5 16-17 0.0 2.0307251618016537E-4 0.0 1.52304387135124E-4 5.8020718908618674E-5 18-19 0.0 2.0790757608921693E-4 0.0 2.2966534567994893E-4 6.527330877219601E-5 20-21 0.0 2.1757769590732002E-4 0.0 2.9252112449761915E-4 6.769083872672178E-5 22-23 4.835059909051556E-6 2.5867570513425826E-4 0.0 3.6988208304244405E-4 7.494342859029912E-5 24-25 4.835059909051556E-6 2.755984148159387E-4 0.0 6.237227282676508E-4 9.186613827197956E-5 26-27 4.835059909051556E-6 2.8285100467951603E-4 0.0 0.0012208526270355178 9.186613827197956E-5 28-29 4.835059909051556E-6 2.9010359454309336E-4 0.0 0.003952661475649647 1.0637131799913423E-4 30-31 7.252589863577334E-6 3.5779443326981514E-4 0.0 0.009534738140649668 1.3538167745344356E-4 32-33 1.4505179727154669E-5 3.674645530879183E-4 0.0 0.017776097755628047 1.547219170896498E-4 34-35 1.4505179727154669E-5 4.061450323603307E-4 0.0 0.0300668200444371 1.6439203690775292E-4 36-37 1.4505179727154669E-5 4.3757292176916583E-4 0.0 0.0487108110537399 1.6439203690775292E-4 38-39 1.4505179727154669E-5 4.859235208596814E-4 0.0 0.06986903321574951 1.6439203690775292E-4 40-41 1.4505179727154669E-5 5.173514102685165E-4 0.0 0.08828819393928142 1.668095668622787E-4 42-43 1.4505179727154669E-5 5.246040001320939E-4 0.0 0.10590473471791076 1.7889721663490757E-4 44-45 1.4505179727154669E-5 5.536143595864032E-4 2.417529954525778E-6 0.11975959888729798 1.885673364530107E-4 46-47 1.4505179727154669E-5 5.802071890861867E-4 4.835059909051556E-6 0.13237185266005896 2.0307251618016534E-4 48-49 1.4505179727154669E-5 5.898773089042899E-4 4.835059909051556E-6 0.14383336217446568 2.2724781572542314E-4 50-51 1.4505179727154669E-5 6.527330877219601E-4 4.835059909051556E-6 0.15555112986405215 2.2724781572542314E-4 52-53 1.4505179727154669E-5 6.527330877219601E-4 4.835059909051556E-6 0.16694011347982307 2.4175299545257782E-4 54-55 1.4505179727154669E-5 6.624032075400633E-4 4.835059909051556E-6 0.17592848985074994 2.5867570513425826E-4 56-57 1.4505179727154669E-5 6.817434471762694E-4 4.835059909051556E-6 0.18345909565909774 2.6351076504330985E-4 58-59 1.4505179727154669E-5 6.86578507085321E-4 4.835059909051556E-6 0.19080355166094704 2.683458249523613E-4 60-61 1.4505179727154669E-5 7.059187467215271E-4 4.835059909051556E-6 0.19850580209606616 2.755984148159387E-4 62-63 1.4505179727154669E-5 7.155888665396303E-4 4.835059909051556E-6 0.2059638820057782 2.755984148159387E-4 64-65 1.4505179727154669E-5 7.542693458120427E-4 4.835059909051556E-6 0.21288285273563096 2.755984148159387E-4 66-67 1.4505179727154669E-5 7.687745255391974E-4 4.835059909051556E-6 0.22099608326301948 2.804334747249903E-4 68-69 1.4505179727154669E-5 8.002024149480326E-4 4.835059909051556E-6 0.22899085482263623 2.852685346340418E-4 70-71 1.4505179727154669E-5 8.122900647206615E-4 4.835059909051556E-6 0.2364634399120754 2.8768606458856756E-4 72-73 1.4505179727154669E-5 8.122900647206615E-4 4.835059909051556E-6 0.2424830894988446 3.1427889408835113E-4 74-75 1.4505179727154669E-5 8.316303043568677E-4 4.835059909051556E-6 0.24695310238476276 3.1427889408835113E-4 76-77 1.4505179727154669E-5 8.678932536747544E-4 4.835059909051556E-6 0.251152351915774 3.166964240428769E-4 78-79 1.4505179727154669E-5 8.751458435383317E-4 4.835059909051556E-6 0.2538478978150703 3.191139539974027E-4 80-81 1.4505179727154669E-5 8.799809034473832E-4 4.835059909051556E-6 0.2548052396770625 3.312016037700316E-4 82-83 1.4505179727154669E-5 8.896510232654863E-4 4.835059909051556E-6 0.2555691791426926 3.529593733607636E-4 84-85 1.4505179727154669E-5 9.210789126743214E-4 4.835059909051556E-6 0.2559052158063717 3.529593733607636E-4 86-87 1.4505179727154669E-5 9.47671742174105E-4 4.835059909051556E-6 0.25605993772346136 3.529593733607636E-4 88 1.4505179727154669E-5 9.621769219012597E-4 4.835059909051556E-6 0.25607927796309754 3.529593733607636E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 39110 0.0 52.55918 1 GTATCAA 69990 0.0 34.026356 1 TCAACGC 89425 0.0 26.299896 4 TATCAAC 89825 0.0 26.262636 2 ATCAACG 89440 0.0 26.21706 3 CAACGCA 91365 0.0 25.72947 5 GTGGTAT 14870 0.0 25.389454 1 AACGCAG 93950 0.0 25.038626 6 TGGTATC 15415 0.0 23.852667 2 ACGCAGA 104740 0.0 22.462982 7 CGCAGAG 105945 0.0 22.22237 8 GCAGAGT 118670 0.0 19.693388 9 GAGTACT 75580 0.0 19.622784 12-13 ACCGAAC 3885 0.0 19.470201 8 GTACATG 72810 0.0 18.749327 1 CAGAGTA 116340 0.0 18.719713 10-11 TACATGG 72450 0.0 18.461725 2 GTACTTT 82820 0.0 17.831884 14-15 GGACCGA 4620 0.0 17.822332 6 ACATGGG 74225 0.0 17.701668 3 >>END_MODULE