##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139899_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21148954 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.714512074687 33.0 33.0 33.0 33.0 33.0 2 32.70572071791352 33.0 33.0 33.0 33.0 33.0 3 32.702726338144195 33.0 33.0 33.0 33.0 33.0 4 36.62858130004916 37.0 37.0 37.0 37.0 37.0 5 36.64806273634147 37.0 37.0 37.0 37.0 37.0 6 36.57298951995451 37.0 37.0 37.0 37.0 37.0 7 36.62146714206291 37.0 37.0 37.0 37.0 37.0 8 36.625598079224154 37.0 37.0 37.0 37.0 37.0 9 36.63159837597642 37.0 37.0 37.0 37.0 37.0 10-11 36.59410957156557 37.0 37.0 37.0 37.0 37.0 12-13 36.5645186991281 37.0 37.0 37.0 37.0 37.0 14-15 38.660341121362315 40.0 37.0 40.0 37.0 40.0 16-17 38.61015133419837 40.0 37.0 40.0 37.0 40.0 18-19 38.64437936268621 40.0 37.0 40.0 37.0 40.0 20-21 38.67156479514598 40.0 37.0 40.0 37.0 40.0 22-23 38.52730187548532 40.0 37.0 40.0 37.0 40.0 24-25 38.68026013982918 40.0 37.0 40.0 37.0 40.0 26-27 38.47115807549558 40.0 37.0 40.0 37.0 40.0 28-29 38.458997051786 40.0 37.0 40.0 37.0 40.0 30-31 38.43495269043851 40.0 37.0 40.0 37.0 40.0 32-33 38.428195018281926 40.0 37.0 40.0 37.0 40.0 34-35 38.33991409236354 40.0 37.0 40.0 37.0 40.0 36-37 33.28615528598928 40.0 37.0 40.0 8.5 40.0 38-39 37.266892486265 40.0 37.0 40.0 33.0 40.0 40-41 37.84156750316282 40.0 37.0 40.0 33.0 40.0 42-43 38.05264990091287 40.0 37.0 40.0 33.0 40.0 44-45 38.058173939315 40.0 37.0 40.0 33.0 40.0 46-47 37.952403987158405 40.0 37.0 40.0 33.0 40.0 48-49 37.932920111887924 40.0 37.0 40.0 33.0 40.0 50-51 37.892466089799846 40.0 37.0 40.0 33.0 40.0 52-53 37.825285418318614 40.0 37.0 40.0 33.0 40.0 54-55 37.745390462557495 40.0 37.0 40.0 33.0 40.0 56-57 37.67225383708296 40.0 37.0 40.0 33.0 40.0 58-59 37.53213150348617 40.0 37.0 40.0 33.0 40.0 60-61 37.34381465626997 38.5 37.0 40.0 33.0 40.0 62-63 37.12402333299886 37.0 37.0 40.0 33.0 40.0 64-65 36.91693563725006 37.0 37.0 40.0 33.0 40.0 66-67 36.65091496265548 37.0 37.0 40.0 33.0 40.0 68-69 36.37553723206477 37.0 37.0 40.0 33.0 40.0 70-71 36.1072454722669 37.0 37.0 38.5 33.0 40.0 72-73 35.84923742087189 37.0 37.0 37.0 33.0 40.0 74-75 35.56722625587095 37.0 33.0 37.0 33.0 40.0 76-77 33.72964911899328 35.0 33.0 37.0 27.0 37.0 78-79 35.19061792674432 37.0 33.0 37.0 33.0 37.0 80-81 35.21775881648866 37.0 33.0 37.0 33.0 37.0 82-83 35.29128445228807 37.0 33.0 37.0 33.0 37.0 84-85 35.13812826070804 37.0 33.0 37.0 33.0 37.0 86-87 35.068324698413875 37.0 33.0 37.0 33.0 37.0 88-89 34.98185508036136 37.0 33.0 37.0 33.0 37.0 90-91 34.84415422284883 37.0 33.0 37.0 33.0 37.0 92-93 34.8254497422531 37.0 33.0 37.0 33.0 37.0 94-95 34.78834889619655 37.0 33.0 37.0 33.0 37.0 96-97 34.765317109332415 37.0 33.0 37.0 33.0 37.0 98-99 34.72611828822858 37.0 33.0 37.0 33.0 37.0 100 34.6719220173466 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 21.0 20 136.0 21 667.0 22 2470.0 23 7072.0 24 16672.0 25 33955.0 26 60063.0 27 97313.0 28 145681.0 29 204778.0 30 279981.0 31 378246.0 32 502546.0 33 682617.0 34 959715.0 35 1488312.0 36 2863555.0 37 6587746.0 38 6618568.0 39 218837.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.96595727618491 19.983829933149412 14.80258550848425 23.247627282181426 2 14.63932447912081 20.516499302991534 41.993537836433894 22.85063838145376 3 18.62906366420654 25.390996553707485 30.0791487859862 25.900790996099776 4 12.503546748605702 17.762041353386305 38.517041985180455 31.217369912827543 5 13.471437441274425 37.69503038006648 35.16010949969949 13.673422678959609 6 30.45063126999094 37.50911747219271 18.409534580291773 13.630716677524571 7 27.162690882962814 32.73262119724692 22.139444816041493 17.965243103748772 8 24.83465139694379 36.790784073765536 20.4206978747034 17.953866654587266 9 25.599308599375647 17.244507695274198 20.992565400633996 36.16361830471615 10-11 24.550221254441237 26.98029651962929 28.077305856355828 20.392176369573644 12-13 25.34666253470503 24.339390496570186 28.567339547856598 21.74660742086819 14-15 22.249923093123186 25.833348542911388 26.557159753621857 25.359568610343565 16-17 21.618804409901312 29.050176665947642 27.210712170445877 22.120306753705172 18-19 21.554318951187845 27.96588663439336 29.351401965317052 21.12839244910174 20-21 22.525272086319767 27.00192682864725 29.351530510594813 21.12127057443817 22-23 22.256086394978027 26.91150603068393 29.19201898608849 21.64038858824955 24-25 21.90951536756936 27.038311647848168 29.355595881517658 21.69657710306481 26-27 21.8359798591801 27.20918979335914 29.181762153251068 21.773068194209692 28-29 21.700467953683393 27.394528979573508 29.257631670865013 21.64737139587809 30-31 22.070676285675546 27.17978706018241 29.11197325149309 21.637563402648954 32-33 21.80771457813498 27.316056594329396 29.088096240834567 21.78813258670106 34-35 22.00035122829273 27.396786960533063 29.027229423015466 21.575632388158745 36-37 22.16326790398152 27.304049596480485 28.81707073141352 21.715611768124475 38-39 21.763320612432288 27.461118180588556 29.044980477222595 21.73058072975656 40-41 22.163281130192605 27.345656081562524 28.767971478619543 21.723091309625325 42-43 21.99144660459657 27.450107277368534 28.618777871958752 21.939668246076145 44-45 22.13654652755129 27.611473037081474 28.35876696599619 21.893213469371045 46-47 22.133659501232724 27.667156499758782 28.031716900595168 22.167467098413326 48-49 22.10466489298099 27.78792996930926 27.99369743712384 22.113707700585913 50-51 22.13504336016488 27.909681735162533 27.820610517566518 22.13466438710607 52-53 22.28334862630459 27.827199152639263 27.70111836406014 22.188333856996 54-55 22.24046314719246 27.735581647743658 27.765227390529525 22.25872781453436 56-57 22.218111957844933 27.869410879254563 27.711299653723962 22.201177509176542 58-59 22.207381336343218 27.92750974355347 27.72609800776231 22.139010912341 60-61 22.290337071729994 27.85579588493673 27.738058086477995 22.115808956855282 62-63 22.234814808602007 27.906516296507533 27.66690972338712 22.19175917150334 64-65 22.2335638150508 27.897679331942182 27.62992994969486 22.238826903312155 66-67 22.318629234760714 27.917947955068108 27.50401074960493 22.25941206056625 68-69 22.24714717486508 27.899615800272198 27.57814458588093 22.27509243898179 70-71 22.234887683598416 27.72283724316153 27.62200099774697 22.420274075493083 72-73 22.274722695221467 27.7810575588745 27.585788430210577 22.35843131569346 74-75 22.176644044363375 27.892800794165325 27.5204283635541 22.4101267979172 76-77 22.27295384773835 27.859897941605542 27.463553529549568 22.403594681106544 78-79 22.24371341332289 27.892401458949024 27.445806712370313 22.41807841535777 80-81 22.332604185653658 27.87904001384669 27.40988163146004 22.378474169039613 82-83 22.293440674350826 27.87673644226801 27.56351381834875 22.26630906503241 84-85 22.44347791795288 27.8244494290916 27.436053796829412 22.2960188561261 86-87 22.252217093378334 27.873804343261092 27.530716479140434 22.34326208422014 88-89 22.2822536953956 27.857119945417764 27.499275340566413 22.361351018620226 90-91 22.32504074489836 27.866468825525608 27.5112854039829 22.297205025593133 92-93 22.296829843005515 27.85423576840065 27.56778587827831 22.281148510315525 94-95 22.207532189718826 27.927891028538497 27.576838864745095 22.28773791699758 96-97 22.282437648638336 28.07286759426385 27.60223568032478 22.04245907677303 98-99 23.382647407595897 29.952223582381986 27.813129114181596 18.851999895840514 100 22.27588434938932 30.9858183152348 21.71521259802442 25.023084737351464 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4766.0 1 4200.5 2 5366.5 3 7574.5 4 10073.5 5 16541.5 6 22425.5 7 26872.5 8 30834.5 9 31887.5 10 30397.5 11 28309.5 12 30203.5 13 39565.5 14 62680.0 15 95645.0 16 125395.5 17 145272.5 18 151661.0 19 144691.5 20 130161.0 21 113561.5 22 101510.0 23 100420.0 24 111043.5 25 134081.5 26 166795.5 27 204199.0 28 243893.5 29 288672.0 30 335105.0 31 381962.0 32 432361.5 33 481419.5 34 531033.5 35 576360.5 36 624624.5 37 672168.0 38 705080.0 39 731421.5 40 761114.0 41 788221.0 42 806150.0 43 822347.0 44 836580.5 45 851512.5 46 861563.5 47 863853.5 48 860782.5 49 847880.5 50 830309.0 51 806302.0 52 771731.0 53 733459.0 54 693906.5 55 645004.5 56 591999.5 57 535085.5 58 475294.0 59 415409.0 60 350117.5 61 287304.5 62 229099.0 63 177447.0 64 133805.0 65 100435.5 66 76702.5 67 59007.0 68 44735.5 69 31654.0 70 22254.5 71 16319.5 72 11874.0 73 8409.5 74 5815.5 75 4022.5 76 2741.5 77 1814.0 78 1187.5 79 800.5 80 530.0 81 351.5 82 248.5 83 183.0 84 134.5 85 95.0 86 74.5 87 56.0 88 33.0 89 22.0 90 16.5 91 10.5 92 7.5 93 5.5 94 3.5 95 3.0 96 3.0 97 3.0 98 2.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.0020331974810669125 4 0.01336236298022115 5 0.008813674662113313 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0015371294202669095 26-27 0.03649602919985129 28-29 0.08404386185036083 30-31 0.08133036203062519 32-33 0.03662446854827485 34-35 0.0012893746960929567 36-37 7.440957518460727 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.798207305595247E-5 56-57 4.612194514178975E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.011082713970391839 74-75 0.03318664036006031 76-77 0.004335618897932337 78-79 0.0 80-81 0.0 82-83 0.0032803532023955658 84-85 0.038904272868305334 86-87 0.04200356236058391 88-89 0.01189714097033164 90-91 2.9732654378259722E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 281.0 20-21 1125.0 22-23 2396.0 24-25 6552.0 26-27 8914.0 28-29 15663.0 30-31 35787.0 32-33 45729.0 34-35 74140.0 36-37 89351.0 38-39 111899.0 40-41 127210.0 42-43 153368.0 44-45 185993.0 46-47 179311.0 48-49 154416.0 50-51 136028.0 52-53 131117.0 54-55 139876.0 56-57 145794.0 58-59 147347.0 60-61 145138.0 62-63 141178.0 64-65 149537.0 66-67 157125.0 68-69 160206.0 70-71 157764.0 72-73 151576.0 74-75 154558.0 76-77 153877.0 78-79 164535.0 80-81 167063.0 82-83 162234.0 84-85 162856.0 86-87 174280.0 88-89 188754.0 90-91 199104.0 92-93 212199.0 94-95 260106.0 96-97 729013.0 98-99 1319844.0 100-101 1.414571E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.03995651435152 #Duplication Level Percentage of deduplicated Percentage of total 1 88.54366737885356 73.52662288761202 2 7.679655758339974 12.754365604354815 3 2.057860038789931 5.126538244012126 4 0.7832723823732365 2.6017161828466424 5 0.34814007994533536 1.445476854978175 6 0.20788694978100195 1.0357753961829346 7 0.11571711326626823 0.6726400837518041 8 0.0714339383340023 0.47454969063235347 9 0.047510653220897044 0.3550754319688552 >10 0.14180434219269134 1.7277146931366474 >50 0.0023339622526298695 0.13254434326599068 >100 6.672501714796007E-4 0.09666472085625062 >500 1.0073095878251939E-5 0.005211204634219441 >1k 4.007938313877849E-5 0.04510466176722282 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.728366235039331E-6 2 0.0 0.0 0.0 4.255529611535398E-5 4.728366235039331E-6 3 0.0 4.728366235039331E-6 0.0 4.255529611535398E-5 4.728366235039331E-6 4 0.0 1.4185098705117993E-5 0.0 6.619712729055063E-5 4.728366235039331E-6 5 0.0 1.4185098705117993E-5 0.0 7.092549352558996E-5 4.728366235039331E-6 6 7.092549352558996E-5 1.4185098705117993E-5 0.0 7.092549352558996E-5 9.456732470078662E-6 7 7.092549352558996E-5 1.4185098705117993E-5 0.0 7.56538597606293E-5 1.4185098705117993E-5 8 7.092549352558996E-5 1.8913464940157324E-5 0.0 7.56538597606293E-5 1.4185098705117993E-5 9 7.092549352558996E-5 5.674039482047197E-5 0.0 8.511059223070796E-5 1.4185098705117993E-5 10-11 7.092549352558996E-5 5.674039482047197E-5 0.0 1.229375221110226E-4 1.4185098705117993E-5 12-13 7.092549352558996E-5 5.674039482047197E-5 0.0 1.631286351088569E-4 1.4185098705117993E-5 14-15 7.092549352558996E-5 8.983895846574728E-5 0.0 1.7731373381397493E-4 2.3641831175196655E-5 16-17 1.3948680393366026E-4 8.983895846574728E-5 0.0 2.1041229745925023E-4 3.309856364527532E-5 18-19 1.4185098705117992E-4 9.693150781830628E-5 0.0 2.6478850916220254E-4 4.019111299783431E-5 20-21 1.4185098705117992E-4 1.0402405717086528E-4 0.0 2.7660942474980085E-4 4.728366235039331E-5 22-23 1.4894353640373893E-4 1.2766588834606192E-4 0.0 3.215289039826745E-4 4.964784546791297E-5 24-25 1.5840026887381758E-4 1.4894353640373893E-4 0.0 3.5462746762794986E-4 5.201202858543264E-5 26-27 1.6076445199133724E-4 1.5603608575629792E-4 0.0 4.0427531309586277E-4 5.201202858543264E-5 28-29 1.654928182263766E-4 1.5603608575629792E-4 0.0 6.028666949675147E-4 5.9104577937991635E-5 30-31 1.6785700134389626E-4 1.773137338139749E-4 0.0 0.001489435364037389 6.14687610555113E-5 32-33 1.7022118446141592E-4 1.9386301563661257E-4 0.0 0.0033902385905232 6.619712729055063E-5 34-35 1.7494955069645524E-4 2.1750484681180924E-4 0.0 0.005969562371737155 6.619712729055063E-5 36-37 1.8204210004901426E-4 2.411466779870059E-4 0.0 0.010236912898860152 7.092549352558996E-5 38-39 1.8440628316653392E-4 2.458750442220452E-4 0.0 0.018915829123274844 8.511059223070795E-5 40-41 1.8913464940157324E-4 2.742452416322812E-4 0.0 0.02581215127707971 1.0875242340590462E-4 42-43 1.8913464940157324E-4 2.8133779098484023E-4 0.0 0.0318219047618147 1.1820915587598327E-4 44-45 1.985913818716519E-4 3.073438052775565E-4 0.0 0.03846998768828 1.229375221110226E-4 46-47 2.0804811434173057E-4 3.215289039826745E-4 0.0 0.04575167169024057 1.2766588834606195E-4 48-49 2.0804811434173057E-4 3.262572702177138E-4 0.0 0.052487229392054094 1.3948680393366026E-4 50-51 2.1750484681180922E-4 3.498991013929105E-4 0.0 0.05875704301971625 1.5603608575629792E-4 52-53 2.1750484681180922E-4 3.546274676279498E-4 0.0 0.06514742998637191 1.6549281822637657E-4 54-55 2.1750484681180922E-4 3.546274676279498E-4 0.0 0.07125647916204272 1.7494955069645524E-4 56-57 2.1750484681180922E-4 3.546274676279498E-4 0.0 0.07646950293617358 1.9386301563661257E-4 58-59 2.1750484681180922E-4 3.5699165074546947E-4 0.0 0.08163524304795405 2.0331974810669122E-4 60-61 2.3641831175196654E-4 3.664483832155482E-4 0.0 0.08647709007263432 2.1750484681180922E-4 62-63 2.600601429271632E-4 3.782692988031465E-4 0.0 0.09127638180119924 2.2932576239940755E-4 64-65 2.6478850916220254E-4 4.4446642609369713E-4 0.0 0.09593382254271299 2.3168994551692722E-4 66-67 2.718810585147615E-4 4.5628734168129544E-4 0.0 0.10077803375051078 2.3641831175196654E-4 68-69 2.742452416322812E-4 4.846575390915314E-4 0.0 0.10576882431159479 2.4587504422204524E-4 70-71 2.837019741023599E-4 4.917500884440904E-4 0.0 0.11027022896735225 2.671526922797222E-4 72-73 3.1207217151259584E-4 4.917500884440904E-4 0.0 0.11386615148909965 2.8370197410235984E-4 74-75 3.1207217151259584E-4 4.964784546791297E-4 0.0 0.11675518325870868 2.8606615721987955E-4 76-77 3.1207217151259584E-4 5.106635533842478E-4 0.0 0.11945980874515118 2.884303403373992E-4 78-79 3.1207217151259584E-4 5.224844689718461E-4 0.0 0.12125185954823109 2.884303403373992E-4 80-81 3.1207217151259584E-4 5.248486520893658E-4 0.0 0.12194456520166434 3.026154390425172E-4 82-83 3.144363546301155E-4 5.248486520893658E-4 0.0 0.1223961241771106 3.215289039826745E-4 84-85 3.191647208651548E-4 5.343053845594444E-4 0.0 0.12263727085509761 3.215289039826745E-4 86-87 3.2389308710019415E-4 5.343053845594444E-4 0.0 0.12271765308109328 3.2625727021771386E-4 88 3.309856364527532E-4 5.721323144397591E-4 0.0 0.12272474563044583 3.357140026877925E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 31985 0.0 52.537724 1 GTATCAA 58850 0.0 38.319996 1 ATCAACG 72215 0.0 30.58736 3 TCAACGC 72320 0.0 30.55998 4 TATCAAC 74380 0.0 29.942429 2 CAACGCA 73965 0.0 29.854189 5 AACGCAG 76095 0.0 29.049591 6 ACGCAGA 87535 0.0 25.228842 7 GTGGTAT 14715 0.0 25.066383 1 TGGTATC 13905 0.0 25.06134 2 CGCAGAG 88945 0.0 24.838446 8 GCAGAGT 102060 0.0 21.530209 9 GTACATG 73000 0.0 21.007639 1 TACATGG 72395 0.0 20.849005 2 GAGTACT 60470 0.0 20.60781 12-13 ACATGGG 74165 0.0 19.773394 3 CAGAGTA 99305 0.0 19.39897 10-11 GTACTTT 66210 0.0 18.79273 14-15 AGAGTAC 93400 0.0 18.739855 10-11 CATGGGG 54065 0.0 17.80536 4 >>END_MODULE