##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139898_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7118503 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.788824981881724 33.0 33.0 33.0 33.0 33.0 2 32.83088157720802 33.0 33.0 33.0 33.0 33.0 3 33.43768247340768 33.0 33.0 33.0 33.0 37.0 4 36.625133121388025 37.0 37.0 37.0 37.0 37.0 5 36.6736701522778 37.0 37.0 37.0 37.0 37.0 6 36.67644194291974 37.0 37.0 37.0 37.0 37.0 7 36.66881842994236 37.0 37.0 37.0 37.0 37.0 8 36.658068276433966 37.0 37.0 37.0 37.0 37.0 9 36.661331181570056 37.0 37.0 37.0 37.0 37.0 10-11 36.64513634397569 37.0 37.0 37.0 37.0 37.0 12-13 36.86725614922126 37.0 37.0 37.0 37.0 38.5 14-15 38.75493976753259 40.0 37.0 40.0 37.0 40.0 16-17 38.71303938482572 40.0 37.0 40.0 37.0 40.0 18-19 38.74301570147544 40.0 37.0 40.0 37.0 40.0 20-21 38.77468309882224 40.0 37.0 40.0 37.0 40.0 22-23 38.810399121037584 40.0 37.0 40.0 37.0 40.0 24-25 38.81085666645973 40.0 37.0 40.0 37.0 40.0 26-27 38.52551278721175 40.0 37.0 40.0 37.0 40.0 28-29 38.52636997312558 40.0 37.0 40.0 37.0 40.0 30-31 38.526430225790705 40.0 37.0 40.0 37.0 40.0 32-33 38.49543709529141 40.0 37.0 40.0 37.0 40.0 34-35 38.35935944537911 40.0 37.0 40.0 37.0 40.0 36-37 38.396327336883914 40.0 37.0 40.0 37.0 40.0 38-39 38.3389514897038 40.0 37.0 40.0 37.0 40.0 40-41 38.33423138911795 40.0 37.0 40.0 37.0 40.0 42-43 38.27963034081484 40.0 37.0 40.0 37.0 40.0 44-45 38.198263072472315 40.0 37.0 40.0 37.0 40.0 46-47 38.09224170896667 40.0 37.0 40.0 35.0 40.0 48-49 37.902677560804335 40.0 37.0 40.0 33.0 40.0 50-51 37.9566994206148 40.0 37.0 40.0 33.0 40.0 52-53 37.378747646504536 40.0 37.0 40.0 33.0 40.0 54-55 33.84053274143963 37.0 33.0 40.0 10.5 40.0 56-57 36.75471857893064 37.0 37.0 40.0 30.0 40.0 58-59 37.434182441279376 38.5 37.0 40.0 33.0 40.0 60-61 37.408584718678384 38.5 37.0 40.0 33.0 40.0 62-63 36.58369237371035 37.0 37.0 40.0 33.0 40.0 64-65 32.757601687668014 37.0 33.0 40.0 10.5 40.0 66-67 35.550044271753634 37.0 33.0 40.0 30.0 40.0 68-69 36.26020401478773 37.0 37.0 40.0 33.0 40.0 70-71 36.10259045462732 37.0 37.0 38.5 33.0 40.0 72-73 35.563303373330974 37.0 37.0 37.0 33.0 40.0 74-75 35.3487749285601 37.0 33.0 37.0 33.0 40.0 76-77 34.01879877688984 35.0 33.0 37.0 30.0 37.0 78-79 35.34878061550782 37.0 33.0 37.0 33.0 37.0 80-81 35.51373834423081 37.0 33.0 37.0 33.0 37.0 82-83 35.44168899179249 37.0 33.0 37.0 33.0 37.0 84-85 35.32595065148854 37.0 33.0 37.0 33.0 37.0 86-87 35.22856443929258 37.0 33.0 37.0 33.0 37.0 88-89 35.1437094276647 37.0 33.0 37.0 33.0 37.0 90-91 35.05185846033784 37.0 33.0 37.0 33.0 37.0 92-93 34.98606496053088 37.0 33.0 37.0 33.0 37.0 94-95 34.94063437968889 37.0 33.0 37.0 33.0 37.0 96-97 34.910452579875 37.0 33.0 37.0 33.0 37.0 98-99 34.87597623529004 37.0 33.0 37.0 33.0 37.0 100 34.81714951544514 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 28.0 21 199.0 22 708.0 23 2166.0 24 4963.0 25 10397.0 26 18804.0 27 30574.0 28 46042.0 29 65528.0 30 90118.0 31 122077.0 32 164925.0 33 226469.0 34 327576.0 35 537894.0 36 1133292.0 37 1802004.0 38 2425406.0 39 109323.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.85189884478245 1.2643137880723513E-4 24.892231297497812 29.255743426340935 2 15.036739801625018 23.480979956557885 38.94166107789378 22.540619163923324 3 17.175797082107007 24.18676200979187 32.52054255670364 26.116898351397484 4 13.02613665580625 23.01391341732244 37.20687760885356 26.753072318017757 5 17.590224671268466 36.35387937635493 31.82649550193818 14.229400450438426 6 28.30342278425675 37.01413063954598 20.159884739811165 14.522561836386105 7 26.74264518818072 33.04123071943638 21.713891249325876 18.50223284305703 8 24.18154491190072 32.56556891245252 21.82922448722716 21.4236616884196 9 23.946537635792247 20.88398361284669 23.41488090965193 31.75459784170914 10-11 24.967749539474802 26.279528153601962 27.99928580489465 20.753436502028585 12-13 25.304084299746734 24.19260060717822 28.19137675435411 22.311938338720935 14-15 22.494146592338303 26.633268258789805 26.605959146185654 24.26662600268624 16-17 21.378857421206217 29.016109778706966 27.547465214769538 22.05756758531728 18-19 21.453569662048327 27.852386941467888 29.607095761566722 21.08694763491706 20-21 22.402330667529792 27.05067808286918 29.54318893938781 21.003802310213217 22-23 22.20482693563072 26.850618836910723 29.347005199689765 21.597549027768792 24-25 21.76781460558972 27.127728119151843 29.591581203505495 21.51287607175294 26-27 21.739338642476664 27.353261958757454 29.316238595010812 21.591160803755077 28-29 21.642104643734292 27.302615741412044 29.44690540190878 21.608374212944884 30-31 21.888751081061773 27.197301647272496 29.388857126228135 21.5250901454376 32-33 21.699330114516425 27.447288691660944 29.285188500074554 21.568192693748074 34-35 21.88770591077475 27.355478647792424 29.194399236829284 21.56241620460354 36-37 21.81065207659009 27.397796506490373 29.20868289908542 21.58286851783411 38-39 21.650615924319087 27.598750739846622 29.196762329105336 21.553871006728954 40-41 21.97005169418013 27.313009478140245 28.996799918290282 21.72013890938934 42-43 21.84967710718468 27.397781342615957 28.9286811158559 21.823860434343466 44-45 22.000120486022528 27.74321948862873 28.49899213296289 21.75766789238585 46-47 22.06292858794214 27.63067294535013 28.192643446575644 22.113755020132082 48-49 22.011482739280417 27.83353707693777 28.141140981530015 22.0138392022518 50-51 22.002872517103437 28.048497369007542 27.945150600319508 22.00347951356952 52-53 22.406959659453506 27.75072877936588 27.70912748202284 22.13318407915778 54-55 22.911636547333003 27.701847591714234 27.43941793721704 21.94709792373572 56-57 22.141360951274656 28.022054429806854 27.7866139982128 22.049970620705686 58-59 22.171712027906356 27.874598063539374 27.840762161794448 22.11292774675982 60-61 22.14633224863343 27.88733313404818 27.91995121848284 22.046383398835545 62-63 22.227376428627927 27.981729540323514 27.711470537092612 22.079423493955947 64-65 22.55498085243124 27.844726812225716 27.448758358953395 22.151533976389643 66-67 22.16039892602239 27.935277727087694 27.710027640630962 22.194295706258956 68-69 22.17964619904001 27.97447466038743 27.715985422137006 22.129893718435557 70-71 22.220097997909114 27.663708285172973 27.73813461066053 22.378059106257382 72-73 22.20014221671478 27.761428471144107 27.71612259339658 22.322306718744535 74-75 22.073398314891186 27.91477225727712 27.751589783373966 22.260239644457723 76-77 22.270772530843825 27.766592453456717 27.56426477246283 22.398370243236627 78-79 22.088580674957335 27.854255118810123 27.68915052551287 22.368013680719677 80-81 22.173512606161125 27.8679258615787 27.653548250547562 22.305013281712615 82-83 22.27519223479593 27.706077734217814 27.755478351781292 22.263251679204966 84-85 22.381678619397817 27.708500835768373 27.72421021383384 22.185610330999975 86-87 22.167485140631573 27.81619848415272 27.70917916903082 22.307137206184887 88-89 22.299203471898107 27.67232855622922 27.69999579726911 22.32847217460356 90-91 22.36325841876674 27.627308425683793 27.76597178291117 22.243461372638297 92-93 22.284318391558468 27.669946848645605 27.8058633358678 22.239871423928122 94-95 22.269342348112495 27.65992993098159 27.79683149378087 22.273896227125036 96-97 22.3061398293056 27.89434064591575 27.91440517064026 21.88511435413839 98-99 23.343023622464194 29.958524839804813 27.45961230018013 19.23883923755086 100 22.452828076191633 30.41627413377521 21.81363258068317 25.317265209349987 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1016.0 1 945.5 2 1475.5 3 2312.0 4 3317.5 5 5606.0 6 7548.5 7 9035.0 8 10427.5 9 10841.5 10 10419.5 11 9660.0 12 10333.5 13 13226.5 14 20739.0 15 32913.5 16 44659.5 17 52414.5 18 54147.0 19 50659.5 20 44800.5 21 38119.5 22 33079.5 23 32073.0 24 35601.0 25 43112.5 26 53853.5 27 66863.0 28 80971.5 29 96866.5 30 113410.5 31 129744.5 32 146765.5 33 164046.0 34 181407.5 35 197519.5 36 214234.0 37 231224.5 38 243921.0 39 253259.5 40 263529.5 41 272054.0 42 276692.0 43 282005.0 44 287490.0 45 292567.0 46 295477.0 47 295947.0 48 295138.0 49 290093.5 50 282953.5 51 273768.0 52 261134.0 53 248166.0 54 234176.5 55 216655.0 56 197571.5 57 178027.0 58 157896.5 59 136517.0 60 114356.5 61 93441.5 62 74078.0 63 57655.5 64 44380.0 65 33752.0 66 25489.0 67 19335.5 68 14824.0 69 10673.5 70 7350.0 71 5285.0 72 3799.5 73 2664.0 74 1853.5 75 1300.5 76 900.5 77 606.0 78 408.0 79 287.5 80 206.0 81 139.0 82 96.0 83 66.0 84 48.0 85 37.5 86 29.5 87 17.5 88 10.0 89 8.0 90 6.5 91 4.5 92 3.5 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.3881425631203638E-4 2 9.131133329577861E-4 3 0.0049589077928322844 4 0.012825730353699367 5 0.01394956214810895 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 7.023948715059894E-6 18-19 0.0 20-21 0.0 22-23 1.5454127618359475E-4 24-25 0.004728537341146966 26-27 0.040684529152489525 28-29 0.08308852437340745 30-31 0.07560478902616695 32-33 0.030116614579291566 34-35 7.356080929056046E-4 36-37 0.0 38-39 7.138792110663842E-6 40-41 0.0 42-43 2.892623571251863E-5 44-45 4.376003745859206E-5 46-47 1.0311104433443477E-4 48-49 3.9398121586766034E-4 50-51 0.011224427711538502 52-53 0.24025943096959088 54-55 0.9856196121267412 56-57 4.67369559837478E-4 58-59 0.0014439119729489655 60-61 0.045351964556509625 62-63 1.0066661781410302 64-65 4.166039104207854 66-67 1.5951423449198622E-5 68-69 4.827211182524337E-5 70-71 8.036809561952477E-4 72-73 0.012113411012048872 74-75 0.027493895867695538 76-77 0.00409222764287271 78-79 0.0 80-81 2.6328942769796287E-4 82-83 0.00756521070098196 84-85 0.039790494471814965 86-87 0.03899003216677654 88-89 0.012013942897322456 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 131.0 20-21 356.0 22-23 849.0 24-25 2802.0 26-27 3869.0 28-29 6157.0 30-31 13080.0 32-33 16906.0 34-35 24569.0 36-37 35186.0 38-39 42453.0 40-41 45025.0 42-43 55440.0 44-45 66282.0 46-47 64974.0 48-49 55068.0 50-51 49433.0 52-53 49677.0 54-55 47888.0 56-57 50105.0 58-59 51300.0 60-61 51093.0 62-63 52754.0 64-65 50666.0 66-67 53998.0 68-69 55448.0 70-71 55161.0 72-73 52406.0 74-75 53274.0 76-77 53237.0 78-79 57257.0 80-81 58119.0 82-83 56473.0 84-85 57868.0 86-87 61157.0 88-89 66449.0 90-91 70016.0 92-93 75536.0 94-95 98298.0 96-97 336229.0 98-99 1270236.0 100-101 3751278.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.08939466063691 #Duplication Level Percentage of deduplicated Percentage of total 1 89.17763151540211 75.88070682914903 2 7.716950689595202 13.132613256072808 3 1.8455142177852466 4.711010628868364 4 0.626520019960063 2.1324083696468774 5 0.26272830815466336 1.1177696350546793 6 0.13620312043548308 0.6953664641247049 7 0.0716265897133015 0.42662642122174393 8 0.04637442969210731 0.31567777201869424 9 0.02937845245923456 0.2249815262240312 >10 0.08508400109716474 1.0985473413889444 >50 0.0012757245892843672 0.07182260498704819 >100 6.107670487266447E-4 0.11060209690098909 >500 7.662306243681046E-5 0.050550253064133126 >1k 2.554100497301086E-5 0.03131680127788226 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.4047897430119788E-5 0.0 4 0.0 0.0 0.0 1.4047897430119788E-5 0.0 5 0.0 0.0 0.0 1.4047897430119788E-5 0.0 6 0.0 0.0 0.0 1.4047897430119788E-5 0.0 7 0.0 1.4047897430119788E-5 0.0 1.4047897430119788E-5 0.0 8 0.0 2.8095794860239576E-5 0.0 1.4047897430119788E-5 1.4047897430119788E-5 9 0.0 5.619158972047915E-5 0.0 2.8095794860239576E-5 2.8095794860239576E-5 10-11 0.0 5.619158972047915E-5 0.0 2.8095794860239576E-5 2.8095794860239576E-5 12-13 0.0 7.726343586565883E-5 0.0 5.619158972047915E-5 2.8095794860239576E-5 14-15 0.0 1.8262266659155725E-4 0.0 8.428738458071873E-5 4.916764100541926E-5 16-17 0.0 2.177424101668567E-4 0.0 1.123831794409583E-4 7.023948715059894E-5 18-19 0.0 2.247663588819166E-4 0.0 1.33455025586138E-4 8.428738458071873E-5 20-21 0.0 2.247663588819166E-4 0.0 1.8262266659155725E-4 9.131133329577862E-5 22-23 0.0 2.528621537421562E-4 0.0 2.0369451273673692E-4 1.1238317944095829E-4 24-25 0.0 2.598861024572161E-4 0.0 2.598861024572161E-4 1.264310768710781E-4 26-27 0.0 2.66910051172276E-4 0.0 4.2143692290359363E-4 1.264310768710781E-4 28-29 0.0 2.66910051172276E-4 0.0 0.001194071281560182 1.264310768710781E-4 30-31 0.0 3.30125589607815E-4 0.0 0.00330125589607815 1.4750292301625776E-4 32-33 0.0 3.371495383228749E-4 0.0 0.006735966817742439 1.6857476916143745E-4 34-35 0.0 4.0036507675841394E-4 0.0 0.012003928354037359 1.9667056402167702E-4 36-37 0.0 4.495327177638332E-4 0.0 0.019898846709764682 2.1071846145179682E-4 38-39 0.0 4.8465246133913266E-4 0.0 0.028685806552304606 2.1071846145179682E-4 40-41 0.0 5.478679997746717E-4 0.0 0.037114545010376476 2.247663588819166E-4 42-43 0.0 6.391793330704504E-4 0.0 0.0451850620839803 2.458382050270963E-4 44-45 0.0 7.30490666366229E-4 0.0 0.052054483927308874 2.66910051172276E-4 46-47 0.0 7.30490666366229E-4 0.0 0.05841115751443808 2.66910051172276E-4 48-49 0.0 7.445385637963488E-4 0.0 0.0642550828453679 2.9500584603251557E-4 50-51 0.0 7.726343586565883E-4 0.0 0.07060473248378205 2.9500584603251557E-4 52-53 0.0 7.726343586565883E-4 0.0 0.07664532837873356 3.090537434626353E-4 54-55 0.0 7.866822560867081E-4 0.0 0.0815972122228508 3.231016408927551E-4 56-57 0.0 7.866822560867081E-4 0.0 0.08609956334920418 3.231016408927551E-4 58-59 0.0 7.937062048017679E-4 0.0 0.09062298632170275 3.371495383228749E-4 60-61 0.0 8.428738458071873E-4 0.0 0.09514640929420132 3.511974357529947E-4 62-63 0.0 8.850175380975467E-4 0.0 0.09940994616424267 3.511974357529947E-4 64-65 0.0 9.412091278180258E-4 0.0 0.10381396200858523 3.582213844680546E-4 66-67 0.0 9.693049226782653E-4 0.0 0.10921537857046629 3.722692818981744E-4 68-69 0.0 0.0010044246662535648 0.0 0.11428666954273953 3.792932306132343E-4 70-71 0.0 0.0010395444098288643 0.0 0.11859235010507124 3.9334112804335404E-4 72-73 0.0 0.001053592307258984 0.0 0.12195682153958494 3.9334112804335404E-4 74-75 0.0 0.0010676402046891037 0.0 0.12504033502549622 3.9334112804335404E-4 76-77 0.0 0.0010957359995493435 0.0 0.12782181871665993 3.9334112804335404E-4 78-79 0.0 0.0011097838969794632 0.0 0.12925470425453217 3.9334112804335404E-4 80-81 0.0 0.0011168078456945231 0.0 0.12978150040816167 4.1441297418853373E-4 82-83 0.0 0.001123831794409583 0.0 0.13023805707464056 4.354848203337134E-4 84-85 0.0 0.001123831794409583 0.0 0.13048389527966764 4.354848203337134E-4 86-87 0.0 0.0011659754866999424 0.0 0.13056818266424836 4.354848203337134E-4 88 0.0 0.0012081191789903016 0.0 0.13057520661296343 4.354848203337134E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11400 0.0 50.77679 1 GTATCAA 20265 0.0 36.785137 1 ATCAACG 23920 0.0 30.474504 3 TCAACGC 24920 0.0 29.45377 4 CAACGCA 25460 0.0 28.792412 5 TATCAAC 25640 0.0 28.727028 2 AACGCAG 25910 0.0 28.36895 6 ACGCAGA 26145 0.0 28.11396 7 GTGGTAT 5245 0.0 27.490051 1 TGGTATC 5060 0.0 26.990602 2 CGCAGAG 30580 0.0 24.105719 8 GTACATG 25995 0.0 21.503458 1 GCAGAGT 35005 0.0 20.889456 9 TACATGG 25950 0.0 20.88869 2 ACATGGG 25380 0.0 20.741411 3 GAGTACT 20670 0.0 20.029728 12-13 CAGAGTA 34305 0.0 19.036282 10-11 GTACTTT 22545 0.0 18.336115 14-15 AGAGTAC 32480 0.0 18.290514 10-11 CATGGGG 18765 0.0 17.844969 4 >>END_MODULE