##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139896_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6372904 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.74289586034875 33.0 33.0 33.0 33.0 33.0 2 32.75720864459907 33.0 33.0 33.0 33.0 33.0 3 32.66780434790795 33.0 33.0 33.0 33.0 33.0 4 36.65219184221196 37.0 37.0 37.0 37.0 37.0 5 36.70545280456131 37.0 37.0 37.0 37.0 37.0 6 36.71300352241302 37.0 37.0 37.0 37.0 37.0 7 36.69983056389991 37.0 37.0 37.0 37.0 37.0 8 36.70284253458078 37.0 37.0 37.0 37.0 37.0 9 36.704722054498234 37.0 37.0 37.0 37.0 37.0 10-11 36.67398096691869 37.0 37.0 37.0 37.0 37.0 12-13 36.649852563289826 37.0 37.0 37.0 37.0 37.0 14-15 38.85008349411822 40.0 37.0 40.0 37.0 40.0 16-17 38.80993029237534 40.0 37.0 40.0 37.0 40.0 18-19 38.82158290788627 40.0 37.0 40.0 37.0 40.0 20-21 38.8415973511888 40.0 37.0 40.0 37.0 40.0 22-23 38.87677185016227 40.0 37.0 40.0 37.0 40.0 24-25 38.896622872950616 40.0 40.0 40.0 37.0 40.0 26-27 38.63242443256084 40.0 37.0 40.0 37.0 40.0 28-29 38.604635861530014 40.0 37.0 40.0 37.0 40.0 30-31 38.61685222432743 40.0 37.0 40.0 37.0 40.0 32-33 38.615210658623795 40.0 37.0 40.0 37.0 40.0 34-35 38.463731631681526 40.0 37.0 40.0 37.0 40.0 36-37 38.52349210212082 40.0 37.0 40.0 37.0 40.0 38-39 38.466017441717085 40.0 37.0 40.0 37.0 40.0 40-41 38.471886926627995 40.0 37.0 40.0 37.0 40.0 42-43 38.429320534668584 40.0 37.0 40.0 37.0 40.0 44-45 38.36124267260519 40.0 37.0 40.0 37.0 40.0 46-47 38.29077757655726 40.0 37.0 40.0 37.0 40.0 48-49 38.06973814077098 40.0 37.0 40.0 37.0 40.0 50-51 38.16388533538922 40.0 37.0 40.0 37.0 40.0 52-53 38.129561634271 40.0 37.0 40.0 37.0 40.0 54-55 33.90734219699325 40.0 37.0 40.0 10.5 40.0 56-57 36.908331178267495 38.5 37.0 40.0 30.0 40.0 58-59 37.6255441860521 38.5 37.0 40.0 33.0 40.0 60-61 37.654606628115324 40.0 37.0 40.0 33.0 40.0 62-63 37.42903205271126 38.5 37.0 40.0 33.0 40.0 64-65 32.87310534279801 37.0 33.0 40.0 10.5 40.0 66-67 35.72720015812309 37.0 35.0 40.0 30.0 40.0 68-69 36.508791334722304 37.0 37.0 40.0 33.0 40.0 70-71 36.42387793201786 37.0 37.0 40.0 33.0 40.0 72-73 35.78429349380532 37.0 37.0 37.0 33.0 40.0 74-75 35.838473632147526 37.0 37.0 37.0 33.0 40.0 76-77 34.02177384927427 35.0 33.0 37.0 30.0 37.0 78-79 35.52228880548026 37.0 33.0 37.0 33.0 37.0 80-81 35.706721025700716 37.0 37.0 37.0 33.0 37.0 82-83 35.63093557795092 37.0 37.0 37.0 33.0 37.0 84-85 35.50701164308789 37.0 35.0 37.0 33.0 37.0 86-87 35.399508313799366 37.0 33.0 37.0 33.0 37.0 88-89 35.315001816405484 37.0 33.0 37.0 33.0 37.0 90-91 35.21915868444218 37.0 33.0 37.0 33.0 37.0 92-93 35.152821038284706 37.0 33.0 37.0 33.0 37.0 94-95 35.101432834690684 37.0 33.0 37.0 33.0 37.0 96-97 35.06714676712441 37.0 33.0 37.0 33.0 37.0 98-99 35.02766650425172 37.0 33.0 37.0 33.0 37.0 100 34.9139115648928 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 4.0 20 27.0 21 136.0 22 424.0 23 1360.0 24 3383.0 25 7085.0 26 12759.0 27 21339.0 28 32549.0 29 47786.0 30 66812.0 31 92567.0 32 127771.0 33 179462.0 34 265901.0 35 445913.0 36 967832.0 37 1601321.0 38 2380389.0 39 118081.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.40084269275044 20.260480936163482 12.919055425909445 24.419620945176643 2 14.639793726690375 21.845143124704215 40.994246892782314 22.520816255823092 3 17.937027487647732 26.961906514913498 30.83121375074399 24.269852246694775 4 11.811896280307511 18.129414683699572 40.09408889654035 29.964600139452568 5 12.520386703914122 38.49704949935654 36.37363068520669 12.608933111522646 6 28.910211106271177 39.032880457637525 19.300855622491724 12.756052813599577 7 25.465188240714127 33.00493778032746 24.37976470381478 17.15010927514364 8 24.107910616572916 36.792583098694095 22.12068469884373 16.978821585889257 9 25.65405033560838 15.925283042079405 21.54692742900254 36.873739193309675 10-11 23.64313819884938 26.855425721146908 30.023039731965206 19.47839634803851 12-13 24.494963363640814 24.630670727191244 29.810405115156293 21.063960794011646 14-15 21.63060199871205 25.902069135201156 27.324254374457862 25.143074491628937 16-17 21.226257291809198 28.953629303061838 27.990771554067027 21.829341851061933 18-19 21.21491238531131 28.272715233118213 29.604965020656206 20.90740736091427 20-21 22.067397848696334 27.557806566892218 29.369946885488275 21.00484869892317 22-23 21.70114576003505 27.618643567756017 29.1969746235463 21.483236048662633 24-25 21.477355672345357 27.655215976769487 29.378630699614227 21.48879765127093 26-27 21.540237812279695 27.801204320172907 29.128285770537087 21.530272097010307 28-29 21.37352735293107 27.957317952914135 29.238419377617298 21.430735316537497 30-31 21.723152104473307 27.78905085437723 29.07164836023331 21.41614868091616 32-33 21.48950776132472 27.956809972943475 29.08368103266029 21.470001233071514 34-35 21.627356719591436 28.038519555382496 29.03482338642708 21.299300338598986 36-37 21.593365190741928 27.899681253384728 29.034887103307618 21.472066452565727 38-39 21.47800869543378 28.042296497713963 29.106056031088066 21.373638775764192 40-41 21.692922495176802 27.931447195391613 28.93462521661797 21.44100509281361 42-43 21.599689354073977 27.986905320595284 28.805404429186478 21.60800089614426 44-45 21.654831439688767 28.198792545337298 28.600578970410734 21.5457970445632 46-47 21.724884085532103 28.129072867916776 28.311004736756868 21.83503830979425 48-49 21.729234926110465 28.238645797949065 28.24568957289893 21.78642970304154 50-51 21.669935739394763 28.315436878128164 28.222328701485385 21.792298680991685 52-53 21.837578025312965 28.25528502948581 28.11564989481671 21.79148705038452 54-55 22.745524237044137 28.092815516419 27.51667428137931 21.644985965157552 56-57 21.867420554070975 28.30836405529548 28.031677143617166 21.79253824701637 58-59 21.77252502365021 28.395910409404113 28.069587341645057 21.761977225300615 60-61 21.86097217686431 28.35749595019323 28.000529652434942 21.781002220507524 62-63 21.839169381774536 28.39553826122302 27.968371807196064 21.796920549806384 64-65 22.27021707777566 28.30547610875211 27.61978709761554 21.804519715856696 66-67 21.856383058922162 28.33416879316478 27.87606814299523 21.933380004917826 68-69 21.81909659528166 28.354874162109684 27.944159450888524 21.881869791720135 70-71 21.841900820065145 28.129845395367102 27.976603883656175 22.051649900911574 72-73 21.89608003061837 28.20871728471844 27.90178123606239 21.9934214486008 74-75 21.745353766149446 28.340085355233217 27.911163212815303 22.003397665802034 76-77 21.841990418730568 28.26886728487141 27.849313210859428 22.039829085538596 78-79 21.858310694676238 28.27355979474284 27.810289300833453 22.05784020974747 80-81 21.8496800897951 28.262018227759096 27.86617418107938 22.022127501366427 82-83 21.938673670884494 28.248812881862346 27.92915831014412 21.883355137109035 84-85 22.045615017423014 28.201056080219093 27.816572117439698 21.93675678491819 86-87 21.817955182022907 28.255823083964017 27.900607597436846 22.02561413657623 88-89 21.90262224136571 28.218373494135797 27.874523286994368 22.004480977504127 90-91 21.968636869353155 28.22900269360733 27.9139053172911 21.88845511974841 92-93 21.94995760007235 28.230520608199765 27.91927106201661 21.900250729711274 94-95 21.80157888770651 28.31471805782659 27.956953825287716 21.926749229179187 96-97 21.883064591898115 28.373870376998696 28.03619185654928 21.706873174553905 98-99 22.954091987775268 30.336199772700063 28.207115292889124 18.50259294663555 100 29.042737276802548 41.58878265489589 29.368480068301565 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1185.0 1 1200.0 2 1930.5 3 2890.0 4 4073.0 5 6823.0 6 9077.0 7 10224.5 8 10664.5 9 10104.0 10 9196.0 11 8364.0 12 9058.0 13 11773.5 14 17676.0 15 25707.5 16 32207.5 17 35901.0 18 36832.0 19 35785.5 20 33995.0 21 32603.0 22 33152.0 23 37421.5 24 45415.5 25 56821.0 26 70962.0 27 86191.0 28 99952.5 29 112814.5 30 125109.0 31 137536.0 32 152296.5 33 167730.0 34 182319.5 35 196527.0 36 211443.0 37 224749.5 38 234456.0 39 242154.5 40 249958.0 41 256650.0 42 259792.0 43 263544.5 44 268502.5 45 270581.0 46 270794.5 47 270385.0 48 268964.0 49 263216.5 50 255150.5 51 246551.0 52 234051.5 53 220300.0 54 205795.0 55 188638.0 56 170043.5 57 150499.0 58 131334.0 59 112373.5 60 93499.0 61 75923.0 62 59710.0 63 45858.0 64 34624.5 65 26058.0 66 19776.0 67 15142.5 68 11497.0 69 8384.5 70 6054.5 71 4371.5 72 3085.5 73 2088.5 74 1415.0 75 965.5 76 660.0 77 434.0 78 272.5 79 174.5 80 121.5 81 88.0 82 65.0 83 41.0 84 27.0 85 23.5 86 20.0 87 14.5 88 10.0 89 7.5 90 4.5 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0029342980845153167 4 0.013259261397943544 5 0.01732334270216529 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0015381298867504784 26-27 0.03466772407412016 28-29 0.0801338140419425 30-31 0.07897424759638462 32-33 0.03526666578809082 34-35 8.871233725642522E-4 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.1972410780221205 56-57 8.802426371224374E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 4.861624100204603 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.009287661443040258 74-75 0.031711372681179004 76-77 0.005009820925528914 78-79 0.0 80-81 0.0 82-83 0.003867134664984907 84-85 0.03908460642163707 86-87 0.04335181068472807 88-89 0.014192808184568926 90-91 3.2292276968276176E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 113.0 20-21 304.0 22-23 672.0 24-25 1775.0 26-27 4108.0 28-29 7935.0 30-31 17073.0 32-33 21810.0 34-35 29512.0 36-37 45157.0 38-39 53200.0 40-41 53075.0 42-43 60050.0 44-45 70654.0 46-47 70873.0 48-49 64457.0 50-51 58793.0 52-53 58079.0 54-55 59274.0 56-57 63209.0 58-59 62497.0 60-61 61870.0 62-63 61711.0 64-65 58508.0 66-67 63533.0 68-69 63724.0 70-71 62353.0 72-73 56983.0 74-75 57330.0 76-77 58157.0 78-79 61519.0 80-81 62433.0 82-83 58678.0 84-85 57269.0 86-87 60407.0 88-89 64031.0 90-91 67176.0 92-93 68201.0 94-95 78300.0 96-97 197061.0 98-99 1320507.0 100-101 2930533.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.67557733242506 #Duplication Level Percentage of deduplicated Percentage of total 1 90.25123553937333 78.22577945339862 2 7.028398142604832 12.183809334648355 3 1.6145427721288952 4.19824280706498 4 0.5689758270522317 1.9726523319178482 5 0.2341544652327759 1.0147736729508048 6 0.11080932828236609 0.5762677501615378 7 0.062402781253614946 0.3786157964614275 8 0.03396969817320769 0.2355474560776801 9 0.023145646509730573 0.18055460465668136 >10 0.07104018597674397 0.8926160019390048 >50 8.892111732854845E-4 0.04974439754126137 >100 4.1015821825657323E-4 0.07426778436705583 >500 2.6244020703958707E-5 0.01712860881467922 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.569143360703378E-5 2 0.0 4.7074300821101336E-5 0.0 3.138286721406756E-5 1.569143360703378E-5 3 0.0 4.7074300821101336E-5 0.0 3.138286721406756E-5 1.569143360703378E-5 4 0.0 6.276573442813511E-5 0.0 6.276573442813511E-5 1.569143360703378E-5 5 0.0 7.84571680351689E-5 0.0 9.414860164220267E-5 1.569143360703378E-5 6 0.0 7.84571680351689E-5 0.0 9.414860164220267E-5 1.569143360703378E-5 7 0.0 7.84571680351689E-5 0.0 1.0984003524923645E-4 1.569143360703378E-5 8 0.0 7.84571680351689E-5 0.0 1.0984003524923645E-4 1.569143360703378E-5 9 0.0 2.196800704984729E-4 0.0 1.4122290246330402E-4 1.569143360703378E-5 10-11 0.0 2.196800704984729E-4 0.0 1.4122290246330402E-4 1.569143360703378E-5 12-13 0.0 2.196800704984729E-4 0.0 1.490686192668209E-4 1.569143360703378E-5 14-15 0.0 2.589086545160573E-4 0.0 1.8045148648088846E-4 1.569143360703378E-5 16-17 0.0 2.667543713195742E-4 0.0 2.0398863689143914E-4 1.569143360703378E-5 18-19 0.0 3.0598295533715866E-4 0.0 2.196800704984729E-4 1.569143360703378E-5 20-21 0.0 3.609029729617769E-4 0.0 2.353715041055067E-4 1.569143360703378E-5 22-23 0.0 3.765944065688107E-4 0.0 2.981372385336418E-4 1.569143360703378E-5 24-25 1.569143360703378E-5 4.472058578004627E-4 0.0 3.216743889441925E-4 1.569143360703378E-5 26-27 1.569143360703378E-5 4.8643444181804715E-4 0.0 4.0013155697936136E-4 1.569143360703378E-5 28-29 1.569143360703378E-5 4.8643444181804715E-4 0.0 7.76725963548172E-4 1.569143360703378E-5 30-31 1.569143360703378E-5 5.648916098532161E-4 0.0 0.002071269236128459 1.569143360703378E-5 32-33 1.569143360703378E-5 5.648916098532161E-4 0.0 0.0045897443300573805 1.569143360703378E-5 34-35 1.569143360703378E-5 6.198116274778343E-4 0.0 0.007994785422783712 1.569143360703378E-5 36-37 1.569143360703378E-5 6.982687955130032E-4 0.0 0.013353409999585748 1.569143360703378E-5 38-39 1.569143360703378E-5 7.531888131376214E-4 0.0 0.020744075228498655 1.569143360703378E-5 40-41 3.138286721406756E-5 7.84571680351689E-4 0.0 0.02774245461723572 1.569143360703378E-5 42-43 3.138286721406756E-5 8.081088307622397E-4 0.0 0.03402687377685275 1.569143360703378E-5 44-45 3.922858401758445E-5 8.630288483868579E-4 0.0 0.040609430175003416 1.569143360703378E-5 46-47 5.4920017624618225E-5 9.101031492079592E-4 0.0 0.047505815245294764 1.569143360703378E-5 48-49 6.276573442813511E-5 9.101031492079592E-4 0.0 0.05423744026271226 1.569143360703378E-5 50-51 7.84571680351689E-5 0.0010042517508501618 0.0 0.060969065280129756 2.3537150410550668E-5 52-53 7.84571680351689E-5 0.0010042517508501618 0.0 0.06760654169590503 3.922858401758445E-5 54-55 7.84571680351689E-5 0.0010042517508501618 0.0 0.07371835508584469 4.7074300821101336E-5 56-57 7.84571680351689E-5 0.0010199431844571955 0.0 0.08004984854628283 4.7074300821101336E-5 58-59 7.84571680351689E-5 0.0010356346180642295 0.0 0.08662455922762999 4.7074300821101336E-5 60-61 7.84571680351689E-5 0.0010591717684747801 0.0 0.09266576116633798 4.7074300821101336E-5 62-63 7.84571680351689E-5 0.0011219375029029152 0.0 0.09895802604275852 4.7074300821101336E-5 64-65 8.630288483868579E-5 0.0012239318213486349 0.0 0.10546212527287403 4.7074300821101336E-5 66-67 9.414860164220267E-5 0.0012239318213486349 0.0 0.11293909338662562 4.7074300821101336E-5 68-69 9.414860164220267E-5 0.00128669755577677 0.0 0.12039252434996667 4.7074300821101336E-5 70-71 1.0984003524923645E-4 0.0013416175734013882 0.0 0.12663771492556614 4.7074300821101336E-5 72-73 1.0984003524923645E-4 0.001349463290204905 0.0 0.1311882306716059 9.414860164220267E-5 74-75 1.0984003524923645E-4 0.0013651547238119387 0.0 0.1349463290204905 9.414860164220267E-5 76-77 1.0984003524923645E-4 0.0014436118918471077 0.0 0.13854751303330476 9.414860164220267E-5 78-79 1.1768575205275335E-4 0.0015063776262752428 0.0 0.14096399380878796 9.414860164220267E-5 80-81 1.2553146885627023E-4 0.0015063776262752428 0.0 0.14174856548913964 1.0984003524923645E-4 82-83 1.2553146885627023E-4 0.0015063776262752428 0.0 0.14225853708136824 1.2553146885627023E-4 84-85 1.2553146885627023E-4 0.0015063776262752428 0.0 0.14252529145268783 1.3337718565978714E-4 86-87 1.2553146885627023E-4 0.0015220690598822767 0.0 0.14267436007195464 1.4122290246330402E-4 88 1.2553146885627023E-4 0.0016476005287385468 0.0 0.1426978972223652 1.4122290246330402E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7075 0.0 47.243813 1 GTATCAA 12415 0.0 34.67215 1 TCAACGC 14485 0.0 29.035395 4 ATCAACG 14590 0.0 28.714397 3 CAACGCA 14755 0.0 28.445448 5 AACGCAG 15475 0.0 27.223963 6 TATCAAC 15795 0.0 26.836128 2 ACGCAGA 17905 0.0 23.46036 7 CGCAGAG 18185 0.0 23.053932 8 TACATGG 17040 0.0 23.041704 2 GTACATG 17695 0.0 22.932287 1 ACATGGG 17530 0.0 21.881674 3 CATGGGG 12610 0.0 19.659515 4 GCAGAGT 22325 0.0 18.815577 9 GAGTACT 13955 0.0 17.686476 12-13 AGAGTAC 19945 0.0 17.454502 10-11 GTTATCG 310 0.0014399685 17.316425 94 CAGAGTA 21840 0.0 17.097414 10-11 AGTACTT 15320 0.0 15.574051 12-13 GAGTACA 12165 0.0 15.478689 1 >>END_MODULE