##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139895_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4925507 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.729641638921635 33.0 33.0 33.0 33.0 33.0 2 32.74490950880793 33.0 33.0 33.0 33.0 33.0 3 32.6502073796667 33.0 33.0 33.0 33.0 33.0 4 36.633488694666354 37.0 37.0 37.0 37.0 37.0 5 36.6911609302352 37.0 37.0 37.0 37.0 37.0 6 36.70027552493581 37.0 37.0 37.0 37.0 37.0 7 36.68708216230329 37.0 37.0 37.0 37.0 37.0 8 36.68899627997686 37.0 37.0 37.0 37.0 37.0 9 36.69153652608757 37.0 37.0 37.0 37.0 37.0 10-11 36.66245119537948 37.0 37.0 37.0 37.0 37.0 12-13 36.640347582492524 37.0 37.0 37.0 37.0 37.0 14-15 38.83121686762398 40.0 37.0 40.0 37.0 40.0 16-17 38.796373043424765 40.0 37.0 40.0 37.0 40.0 18-19 38.80997286167698 40.0 37.0 40.0 37.0 40.0 20-21 38.83078805247453 40.0 37.0 40.0 37.0 40.0 22-23 38.85893090669667 40.0 37.0 40.0 37.0 40.0 24-25 38.87515192782533 40.0 37.0 40.0 37.0 40.0 26-27 38.60182853299212 40.0 37.0 40.0 37.0 40.0 28-29 38.57398358551977 40.0 37.0 40.0 37.0 40.0 30-31 38.593137594590004 40.0 37.0 40.0 37.0 40.0 32-33 38.592158517510185 40.0 37.0 40.0 37.0 40.0 34-35 38.42515141025861 40.0 37.0 40.0 37.0 40.0 36-37 38.49370725570202 40.0 37.0 40.0 37.0 40.0 38-39 38.43795448836677 40.0 37.0 40.0 37.0 40.0 40-41 38.450591629792555 40.0 37.0 40.0 37.0 40.0 42-43 38.41493845425346 40.0 37.0 40.0 37.0 40.0 44-45 38.35304187207912 40.0 37.0 40.0 37.0 40.0 46-47 38.290704771549116 40.0 37.0 40.0 37.0 40.0 48-49 38.065463856577196 40.0 37.0 40.0 35.0 40.0 50-51 38.16985347247695 40.0 37.0 40.0 37.0 40.0 52-53 38.13947957847288 40.0 37.0 40.0 37.0 40.0 54-55 33.50639429348447 40.0 33.0 40.0 10.5 40.0 56-57 36.81971589882062 38.5 35.0 40.0 30.0 40.0 58-59 37.62377812677188 38.5 37.0 40.0 33.0 40.0 60-61 37.68086342148301 40.0 37.0 40.0 33.0 40.0 62-63 37.46498704521735 38.5 37.0 40.0 33.0 40.0 64-65 32.47901400714012 37.0 33.0 40.0 8.5 40.0 66-67 35.65261472617476 37.0 33.0 40.0 30.0 40.0 68-69 36.5460313546229 37.0 37.0 40.0 33.0 40.0 70-71 36.4874900554578 37.0 37.0 40.0 33.0 40.0 72-73 35.829932138279254 37.0 37.0 37.0 33.0 40.0 74-75 35.89662793840583 37.0 37.0 37.0 33.0 40.0 76-77 34.10691973251609 35.0 33.0 37.0 30.0 37.0 78-79 35.55344649327441 37.0 35.0 37.0 33.0 37.0 80-81 35.71748423908298 37.0 37.0 37.0 33.0 37.0 82-83 35.63516220309634 37.0 37.0 37.0 33.0 37.0 84-85 35.50411658394462 37.0 35.0 37.0 33.0 37.0 86-87 35.39334673557849 37.0 33.0 37.0 33.0 37.0 88-89 35.30718075434896 37.0 33.0 37.0 33.0 37.0 90-91 35.2151280649868 37.0 33.0 37.0 33.0 37.0 92-93 35.152363497890754 37.0 33.0 37.0 33.0 37.0 94-95 35.104874108743914 37.0 33.0 37.0 33.0 37.0 96-97 35.07182441781865 37.0 33.0 37.0 33.0 37.0 98-99 35.041135833635735 37.0 33.0 37.0 33.0 37.0 100 34.99839657796067 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 13.0 21 95.0 22 341.0 23 1059.0 24 2557.0 25 5463.0 26 10160.0 27 16827.0 28 26098.0 29 37938.0 30 53732.0 31 74034.0 32 102783.0 33 143819.0 34 211136.0 35 350646.0 36 764534.0 37 1197406.0 38 1835579.0 39 91282.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.27335378875718 20.363345336835376 12.999311542953853 24.363989331453595 2 14.51223193876285 21.980539262252595 41.15795592210102 22.349272876883536 3 17.91379596689608 27.007161741996182 30.818778325467207 24.26026396564053 4 11.756503877838936 18.201883162081405 40.40049072997912 29.641122230100542 5 12.442544163526682 38.42322259522094 36.59064640506578 12.543586836186599 6 28.76083619412174 39.262760158497386 19.37816756731845 12.598236080062417 7 25.371053172800284 33.10254152516685 24.513111036082176 17.013294265950694 8 23.78494234197617 37.126594277502804 22.215905895575826 16.872557484945204 9 25.41137389511374 16.25404247725158 21.851110961775102 36.48347266585957 10-11 23.42634981535911 27.08330330258388 30.168244609133637 19.322102272923374 12-13 24.314694913640363 24.756152006280775 30.0862428984468 20.842910181632064 14-15 21.393472793765188 26.177092023217103 27.554686248542538 24.87474893447517 16-17 21.063496610602726 29.21939812490369 28.22158206251661 21.495523201976972 18-19 20.937225345532955 28.583108297277825 29.853251655108803 20.626414702080414 20-21 21.752149255143483 27.888908944024042 29.698236314417503 20.660705486414972 22-23 21.43710315766219 27.802936246235575 29.516546906039693 21.24341369006254 24-25 21.194009572044397 27.855548889685906 29.68647756808495 21.263963970184744 26-27 21.27828586880517 28.095175042860493 29.388799334027528 21.237739754306805 28-29 21.1761899069338 28.214253193984145 29.4885708399358 21.12098605914625 30-31 21.45778528988813 28.05799708765336 29.379394643144813 21.1048229793137 32-33 21.184357001063784 28.25859473537642 29.353513161558958 21.203535102000846 34-35 21.371721340528207 28.322801083902462 29.249354932161854 21.056122643407484 36-37 21.36868731742759 28.17372147448447 29.28628002660784 21.171311181480103 38-39 21.183108752008433 28.32640961679804 29.329514529537636 21.160967101655896 40-41 21.429035939655737 28.245722659460082 29.169400710203096 21.15584069068108 42-43 21.296820846456313 28.342842188847122 29.00643240836425 21.353904556332314 44-45 21.45892796251794 28.486782006890937 28.77712398296712 21.277166047624007 46-47 21.472850782547106 28.434806698984932 28.54281071539439 21.549531803073574 48-49 21.460974268256297 28.552691679763427 28.51384531018325 21.472488741797026 50-51 21.464494900326184 28.625039004951358 28.440974157947075 21.46949193677538 52-53 21.551315357095667 28.56177467052313 28.342173428860967 21.54473654352024 54-55 22.612066067274032 28.37220888642651 27.66123973745998 21.354485308839482 56-57 21.535905970447953 28.62505251234359 28.29815785848285 21.54088365872561 58-59 21.5219032397328 28.693273274230037 28.239666903020264 21.5451565830169 60-61 21.549317494780105 28.641664396727904 28.321756549096776 21.48726155939521 62-63 21.589396032037307 28.569680350623834 28.317891385400245 21.523032231938615 64-65 22.047984792975704 28.53777545009264 27.899323477956678 21.51491627897498 66-67 21.627718001621833 28.669456996167497 28.107976873107095 21.594848129103575 68-69 21.569271044189758 28.633919661697792 28.21980445231944 21.577004841793006 70-71 21.544347569631856 28.41334293059025 28.24686065226319 21.795448847514702 72-73 21.713423075202467 28.45828951139891 28.15943909906688 21.668848314331747 74-75 21.48966632100978 28.613397911647592 28.184336417094038 21.712599350248592 76-77 21.570931861509607 28.570786032270203 28.107958741601358 21.750323364618836 78-79 21.59144350864033 28.594742443513894 28.079387213586326 21.734426834259445 80-81 21.54730433051538 28.546943948455894 28.138727237499563 21.767024483529166 82-83 21.62711606037589 28.54095978006902 28.211602095231587 21.620322064323506 84-85 21.762196925221033 28.50993230792809 28.113315807335347 21.61455495951553 86-87 21.553506191380418 28.532241535937903 28.184888176534894 21.729364096146785 88-89 21.67203646463228 28.560925959507678 28.130055915890285 21.63698165996976 90-91 21.681123772215148 28.57347464909768 28.181346628782894 21.564054949904275 92-93 21.682704182901606 28.490500431380973 28.18368764174522 21.643107743972205 94-95 21.538928697933972 28.573040027448464 28.236030044620854 21.65200122999671 96-97 21.628785924452647 28.677590640912076 28.308610387052845 21.385013047582436 98-99 22.69941411293413 30.62431834943908 28.468166456568937 18.20810108105786 100 21.585875653912538 31.581714729245043 22.440166529232062 24.39224308761036 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 930.0 1 878.0 2 1382.5 3 2122.0 4 3003.5 5 5028.0 6 6707.5 7 7565.0 8 7982.0 9 7719.5 10 6999.0 11 6173.0 12 6594.0 13 8715.5 14 13183.5 15 19161.0 16 23925.5 17 26715.5 18 27672.5 19 27041.5 20 25934.5 21 25202.0 22 25636.5 23 28737.5 24 34720.0 25 43290.0 26 54846.5 27 67487.5 28 79245.0 29 91819.5 30 103750.0 31 114509.0 32 125897.0 33 136473.0 34 147167.0 35 158007.5 36 168806.5 37 178813.0 38 186016.0 39 191928.0 40 198919.0 41 204127.0 42 205971.5 43 208401.0 44 210824.5 45 213264.0 46 213546.0 47 210588.5 48 206377.0 49 199792.0 50 191893.5 51 182458.5 52 171172.0 53 159465.0 54 147796.5 55 134598.5 56 121161.5 57 107685.5 58 93578.5 59 80331.0 60 66674.0 61 53219.5 62 41653.0 63 31864.0 64 23786.0 65 17710.5 66 13355.0 67 10326.5 68 7830.5 69 5479.5 70 3840.5 71 2819.5 72 1995.5 73 1346.5 74 920.5 75 613.0 76 396.5 77 251.5 78 174.5 79 120.5 80 82.0 81 57.5 82 37.5 83 25.0 84 18.0 85 12.0 86 10.0 87 8.5 88 5.5 89 3.5 90 2.5 91 2.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.0034311188675602328 4 0.012161184625257867 5 0.017358619122863902 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0016246947097097036 26-27 0.03441678133001356 28-29 0.08065500730459485 30-31 0.07869223263171099 32-33 0.034371922783939954 34-35 8.809805518421201E-4 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.2832396891824536 56-57 1.1338696385541076E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 5.314981462904619 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.008512720011062819 74-75 0.03010381117005484 76-77 0.004915635407321839 78-79 0.0 80-81 0.0 82-83 0.004099883678941263 84-85 0.03825945415448202 86-87 0.04191042071521465 88-89 0.013837301957875981 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 138.0 20-21 353.0 22-23 651.0 24-25 1543.0 26-27 3178.0 28-29 5889.0 30-31 12249.0 32-33 15836.0 34-35 21581.0 36-37 33123.0 38-39 38990.0 40-41 39359.0 42-43 44701.0 44-45 52531.0 46-47 53175.0 48-49 48349.0 50-51 43962.0 52-53 44198.0 54-55 44350.0 56-57 46863.0 58-59 46999.0 60-61 46612.0 62-63 46353.0 64-65 44228.0 66-67 47134.0 68-69 48601.0 70-71 48253.0 72-73 44380.0 74-75 44254.0 76-77 45126.0 78-79 47476.0 80-81 48602.0 82-83 45622.0 84-85 44288.0 86-87 46694.0 88-89 50043.0 90-91 52023.0 92-93 53051.0 94-95 60420.0 96-97 150565.0 98-99 278381.0 100-101 3035383.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.92851046042672 #Duplication Level Percentage of deduplicated Percentage of total 1 91.23595888646877 80.2224196531593 2 6.410851285593981 11.27393208651181 3 1.4425330428869714 3.8051934525299473 4 0.4537296969167337 1.5958310560619706 5 0.19380166134374366 0.8520345703355722 6 0.10080375097695174 0.531811420333629 7 0.050759417618409367 0.31242399881178334 8 0.031955000481456886 0.22478044752773782 9 0.021079026358220714 0.16681026506709787 >10 0.05642684995393577 0.7337251093910419 >50 0.001378322857256584 0.08254704521772803 >100 6.249240059673991E-4 0.14579754597760183 >500 9.813453755908732E-5 0.0526933490747739 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.030247850627357E-5 0.0 2 0.0 0.0 0.0 4.060495701254714E-5 0.0 3 0.0 0.0 0.0 4.060495701254714E-5 0.0 4 0.0 0.0 0.0 4.060495701254714E-5 0.0 5 0.0 0.0 0.0 4.060495701254714E-5 0.0 6 0.0 0.0 0.0 4.060495701254714E-5 0.0 7 0.0 2.030247850627357E-5 0.0 4.060495701254714E-5 2.030247850627357E-5 8 0.0 2.030247850627357E-5 0.0 4.060495701254714E-5 2.030247850627357E-5 9 0.0 4.060495701254714E-5 0.0 6.09074355188207E-5 2.030247850627357E-5 10-11 2.030247850627357E-5 4.060495701254714E-5 0.0 6.09074355188207E-5 2.030247850627357E-5 12-13 2.030247850627357E-5 4.060495701254714E-5 0.0 6.09074355188207E-5 3.0453717759410353E-5 14-15 2.030247850627357E-5 8.120991402509427E-5 0.0 1.0151239253136784E-4 4.060495701254714E-5 16-17 4.060495701254714E-5 8.120991402509427E-5 0.0 1.4211734954391498E-4 4.060495701254714E-5 18-19 4.060495701254714E-5 8.120991402509427E-5 0.0 2.3347850282214602E-4 4.060495701254714E-5 20-21 4.060495701254714E-5 1.0151239253136784E-4 0.0 2.7408345983469316E-4 4.060495701254714E-5 22-23 6.0907435518820706E-5 1.218148710376414E-4 0.0 2.8423469908782996E-4 7.105867477195749E-5 24-25 8.120991402509427E-5 1.3196611029077818E-4 0.0 3.248396561003771E-4 8.120991402509427E-5 26-27 1.0151239253136784E-4 1.4211734954391498E-4 0.0 4.0604957012547137E-4 8.120991402509427E-5 28-29 1.218148710376414E-4 1.4211734954391498E-4 0.0 8.933090542760369E-4 8.120991402509427E-5 30-31 1.218148710376414E-4 1.4211734954391498E-4 0.0 0.0026596246843218372 8.120991402509427E-5 32-33 1.3196611029077818E-4 1.5226858879705175E-4 0.0 0.005491820435947 8.120991402509427E-5 34-35 1.4211734954391498E-4 1.8272230655646212E-4 0.0 0.00972488720450504 1.0151239253136784E-4 36-37 1.6241982805018855E-4 2.0302478506273569E-4 0.0 0.016384100154562767 1.0151239253136784E-4 38-39 2.1317602431587248E-4 2.436297420752828E-4 0.0 0.02634246586188995 1.0151239253136784E-4 40-41 2.2332726356900925E-4 2.8423469908782996E-4 0.0 0.03599629439162304 1.0151239253136784E-4 42-43 2.6393222058155636E-4 2.9438593834096676E-4 0.0 0.04477711634558636 1.0151239253136784E-4 44-45 3.248396561003771E-4 3.654446131129242E-4 0.0 0.05347672838552457 1.0151239253136784E-4 46-47 3.248396561003771E-4 4.263520486317449E-4 0.0 0.06268390238811963 1.218148710376414E-4 48-49 3.3499089535351384E-4 4.263520486317449E-4 0.0 0.07195198382623352 1.218148710376414E-4 50-51 3.4514213460665064E-4 4.568057663911553E-4 0.0 0.08099673800077839 1.218148710376414E-4 52-53 3.5529337385978744E-4 4.6695700564429205E-4 0.0 0.09030542439590483 1.218148710376414E-4 54-55 3.7559585236606103E-4 4.872594841505656E-4 0.0 0.09817263481708582 1.218148710376414E-4 56-57 3.857470916191978E-4 5.075619626568391E-4 0.0 0.10361369905676715 1.218148710376414E-4 58-59 3.857470916191978E-4 5.075619626568391E-4 0.0 0.10956232525910531 1.218148710376414E-4 60-61 3.857470916191978E-4 5.075619626568391E-4 0.0 0.115328229154887 1.218148710376414E-4 62-63 3.857470916191978E-4 5.075619626568391E-4 0.0 0.12101292313664361 1.218148710376414E-4 64-65 3.857470916191978E-4 5.481669196693863E-4 0.0 0.12661640720437511 1.218148710376414E-4 66-67 3.857470916191978E-4 5.481669196693863E-4 0.0 0.13319441024040773 1.3196611029077818E-4 68-69 3.857470916191978E-4 5.786206374287967E-4 0.0 0.1398333207119592 1.4211734954391498E-4 70-71 3.857470916191978E-4 5.989231159350703E-4 0.0 0.14557892212923462 1.4211734954391498E-4 72-73 3.857470916191978E-4 6.192255944413437E-4 0.0 0.15074590290908124 1.4211734954391498E-4 74-75 3.857470916191978E-4 6.395280729476174E-4 0.0 0.1544815589542356 1.4211734954391498E-4 76-77 3.857470916191978E-4 6.902842692133013E-4 0.0 0.1578314679077707 1.4211734954391498E-4 78-79 3.857470916191978E-4 7.105867477195749E-4 0.0 0.1599429256724232 1.4211734954391498E-4 80-81 3.857470916191978E-4 7.105867477195749E-4 0.0 0.16058245374537078 1.5226858879705175E-4 82-83 3.857470916191978E-4 7.105867477195749E-4 0.0 0.16125243553607782 1.8272230655646212E-4 84-85 3.857470916191978E-4 7.105867477195749E-4 0.0 0.16140470412487484 1.8272230655646212E-4 86-87 3.857470916191978E-4 7.308892262258485E-4 0.0 0.16153667023516566 1.928735458095989E-4 88 3.857470916191978E-4 7.308892262258485E-4 0.0 0.1615468214744188 2.0302478506273569E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6065 0.0 39.573994 1 GTATCAA 9790 0.0 30.719437 1 TCAACGC 10860 0.0 26.969456 4 ATCAACG 10890 0.0 26.668095 3 CAACGCA 10980 0.0 26.63411 5 AACGCAG 11330 0.0 25.917028 6 TATCAAC 11885 0.0 24.852575 2 TACATGG 11810 0.0 23.156487 2 GTACATG 12230 0.0 23.070597 1 ACGGGCG 290 0.0 22.78921 5 ACGCAGA 13135 0.0 22.292648 7 CGCAGAG 13295 0.0 22.024366 8 ACATGGG 12010 0.0 21.842144 3 CATGGGG 8720 0.0 20.323408 4 CGTACGA 220 0.0 19.814709 60-61 GGCGTCG 335 1.2732926E-11 18.492344 8 GCAGAGT 16275 0.0 17.94089 9 GAGTACT 10425 0.0 17.411186 12-13 AGAGTAC 14170 0.0 17.225157 10-11 CAGAGTA 15550 0.0 16.732302 10-11 >>END_MODULE