##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139894_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5860264 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71155343854816 33.0 33.0 33.0 33.0 33.0 2 32.725071771510635 33.0 33.0 33.0 33.0 33.0 3 32.63358749708204 33.0 33.0 33.0 33.0 33.0 4 36.611982668357605 37.0 37.0 37.0 37.0 37.0 5 36.67107266839856 37.0 37.0 37.0 37.0 37.0 6 36.683239355769636 37.0 37.0 37.0 37.0 37.0 7 36.66834770583714 37.0 37.0 37.0 37.0 37.0 8 36.6708040798162 37.0 37.0 37.0 37.0 37.0 9 36.66966505263244 37.0 37.0 37.0 37.0 37.0 10-11 36.638838199098196 37.0 37.0 37.0 37.0 37.0 12-13 36.61189478835766 37.0 37.0 37.0 37.0 37.0 14-15 38.762115239176936 40.0 37.0 40.0 37.0 40.0 16-17 38.72308517158954 40.0 37.0 40.0 37.0 40.0 18-19 38.740996480704624 40.0 37.0 40.0 37.0 40.0 20-21 38.76717064341281 40.0 37.0 40.0 37.0 40.0 22-23 38.80274643453755 40.0 37.0 40.0 37.0 40.0 24-25 38.82198461646654 40.0 37.0 40.0 37.0 40.0 26-27 38.54525235857288 40.0 37.0 40.0 37.0 40.0 28-29 38.51392770870713 40.0 37.0 40.0 37.0 40.0 30-31 38.52574532596654 40.0 37.0 40.0 37.0 40.0 32-33 38.523677945620086 40.0 37.0 40.0 37.0 40.0 34-35 38.35804259446329 40.0 37.0 40.0 37.0 40.0 36-37 38.427466582333864 40.0 37.0 40.0 37.0 40.0 38-39 38.36794590761561 40.0 37.0 40.0 37.0 40.0 40-41 38.37742432493469 40.0 37.0 40.0 37.0 40.0 42-43 38.33596195027327 40.0 37.0 40.0 37.0 40.0 44-45 38.26796985588318 40.0 37.0 40.0 37.0 40.0 46-47 38.200667685651325 40.0 37.0 40.0 37.0 40.0 48-49 37.979721797327535 40.0 37.0 40.0 33.0 40.0 50-51 38.084527283334786 40.0 37.0 40.0 35.0 40.0 52-53 38.05334477481201 40.0 37.0 40.0 35.0 40.0 54-55 33.59053469592148 40.0 33.0 40.0 10.5 40.0 56-57 36.77185594004479 37.0 35.0 40.0 30.0 40.0 58-59 37.54734799451296 38.5 37.0 40.0 33.0 40.0 60-61 37.59356866255995 40.0 37.0 40.0 33.0 40.0 62-63 37.374242937637526 38.5 37.0 40.0 33.0 40.0 64-65 32.56131719690273 37.0 33.0 40.0 8.5 40.0 66-67 35.59748893527069 37.0 33.0 40.0 30.0 40.0 68-69 36.44860221408881 37.0 37.0 40.0 33.0 40.0 70-71 36.38415274178695 37.0 37.0 40.0 33.0 40.0 72-73 35.746519363099225 37.0 37.0 37.0 33.0 40.0 74-75 35.80399029150153 37.0 37.0 37.0 33.0 40.0 76-77 33.98403487470442 35.0 33.0 37.0 30.0 37.0 78-79 35.48617599465906 37.0 33.0 37.0 33.0 37.0 80-81 35.66967377619657 37.0 37.0 37.0 33.0 37.0 82-83 35.590399450901245 37.0 37.0 37.0 33.0 37.0 84-85 35.462210471919335 37.0 33.0 37.0 33.0 37.0 86-87 35.35159397903047 37.0 33.0 37.0 33.0 37.0 88-89 35.26519068071329 37.0 33.0 37.0 33.0 37.0 90-91 35.16979704516848 37.0 33.0 37.0 33.0 37.0 92-93 35.10458576866061 37.0 33.0 37.0 33.0 37.0 94-95 35.05220402015127 37.0 33.0 37.0 33.0 37.0 96-97 35.02076717870236 37.0 33.0 37.0 33.0 37.0 98-99 34.987505743126654 37.0 33.0 37.0 33.0 37.0 100 34.87576062264067 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 6.0 20 37.0 21 117.0 22 460.0 23 1499.0 24 3311.0 25 7009.0 26 13046.0 27 21601.0 28 33438.0 29 48011.0 30 67461.0 31 93009.0 32 127342.0 33 175404.0 34 257274.0 35 423344.0 36 900493.0 37 1438284.0 38 2135358.0 39 113760.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.58040252111509 20.422885385368303 12.995540815226073 24.001171278290535 2 14.54304788999267 22.075080576574706 41.20773398604568 22.174137547386945 3 17.90472449262203 27.43249707043199 30.764397544811256 23.89838089213473 4 11.642112042946854 18.27389986314581 40.45880200787744 29.6251860860299 5 12.302814835345727 38.758792253720046 36.352608009486495 12.585784901447738 6 28.419777675544992 39.30664215810073 19.602376275198523 12.671203891155757 7 25.358721040553807 33.2593036764214 24.46806150712664 16.913913775898152 8 24.044889445253663 36.857622796515656 22.21812873959262 16.87935901863807 9 25.7187048228544 16.103540727857993 21.766920398125407 36.4108340511622 10-11 23.481510389293042 27.146703629734088 30.00270124349347 19.369084737479405 12-13 24.469529017805343 24.950462982555052 29.94223468430774 20.63777331533187 14-15 21.514218472068837 26.23572931185353 27.6456231323367 24.604429083740936 16-17 20.903375684098872 29.299806288590414 28.275944564954752 21.520873462355965 18-19 20.881883478286987 28.51322909684615 30.111433546338528 20.49345387852834 20-21 21.806886462438342 27.793832229411436 29.84665853766959 20.55262277048063 22-23 21.439355211570778 27.75235962983167 29.717994657879803 21.090290500717746 24-25 21.1429822379053 27.843571690405362 29.89605101390695 21.11739505778239 26-27 21.226950340677185 28.01235869248908 29.621272680885273 21.139418285948466 28-29 21.056208747859216 28.228786216894054 29.67399396625636 21.041011068990365 30-31 21.372294159774274 28.05787286745833 29.577099038213824 20.992733934553577 32-33 21.116981768683456 28.20191324588076 29.53839715558237 21.142707829853418 34-35 21.25394916328645 28.300048734401308 29.487097366816418 20.958904735495825 36-37 21.272910506017396 28.193703124300995 29.457688889104674 21.07569748057694 38-39 21.11463874891833 28.34355040937509 29.4730744125469 21.068736429159678 40-41 21.29036595608167 28.264637215377125 29.340339217715066 21.10465761082614 42-43 21.28744097270356 28.303657687829837 29.139403310695883 21.269498028770716 44-45 21.409668987412033 28.503447236803975 28.854866068146002 21.232017707637986 46-47 21.39397085078867 28.50277390895882 28.606435432264625 21.49681980798789 48-49 21.430862822396104 28.602025845786223 28.51178892068481 21.455322411132858 50-51 21.35865554043514 28.68165309571823 28.45407023658213 21.505621127264508 52-53 21.513241251126196 28.607316917445253 28.302769323902826 21.57667250752572 54-55 22.567193697514266 28.436561226605317 27.638718528653072 21.357526547227344 56-57 21.56964482508423 28.65946549019528 28.25200886861166 21.51888081610883 58-59 21.470953131915504 28.742339927902783 28.289204145467483 21.49750279471423 60-61 21.579902607738653 28.658027725435176 28.26011932395514 21.50195034287103 62-63 21.535112534257845 28.685993507561804 28.21511116996304 21.56378278821731 64-65 21.97534895023224 28.615781681705148 27.869805889575545 21.539063478487066 66-67 21.5949844821936 28.6738192136761 28.078653970438427 21.652542333691876 68-69 21.600459321362266 28.682614330455948 28.15181545290379 21.565110895277996 70-71 21.554698531045176 28.432590962397363 28.21818950489782 21.794521001659646 72-73 21.67516499409451 28.528729669182447 28.13570006114435 21.660405275578693 74-75 21.482329892507188 28.632281346947735 28.151533134995617 21.733855625549463 76-77 21.57243425276124 28.605794827861974 28.08689393458032 21.734876984796465 78-79 21.588847018844852 28.660029731368926 28.04804518191458 21.703078067871644 80-81 21.510410114232073 28.569811377655867 28.122713563699957 21.7970649444121 82-83 21.655515035986035 28.502744086280664 28.219685298517238 21.622055579216063 84-85 21.797856112423208 28.46789437720849 28.087270871393464 21.646978638974833 86-87 21.523245620668547 28.580789551156847 28.135678231119527 21.760286597055078 88-89 21.639016586243688 28.54985634196201 28.0877561216063 21.723370950188006 90-91 21.700563417581424 28.537570647485417 28.136127925738048 21.62573800919511 92-93 21.732265462222795 28.49467779576861 28.116653679498103 21.656403062510496 94-95 21.540577678896195 28.586742893523727 28.186918625102475 21.685760802477606 96-97 21.638309541200982 28.722252690913685 28.25986073563388 21.379577032251454 98-99 22.63518658295292 30.621609677511184 28.46287231534549 18.280331424190408 100 28.55765086289542 41.83715964677352 29.605189490331064 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1383.0 1 1308.5 2 2052.0 3 3095.0 4 4262.0 5 7215.0 6 9725.0 7 11107.0 8 11695.0 9 11106.5 10 9934.0 11 8704.5 12 9240.0 13 12005.0 14 18467.5 15 27509.0 16 34826.5 17 38856.0 18 39803.0 19 38481.5 20 36197.0 21 34381.5 22 34640.0 23 38245.0 24 45718.5 25 57077.5 26 71867.0 27 87859.5 28 103024.5 29 118204.5 30 131959.0 31 144513.0 32 158340.5 33 171949.5 34 184525.0 35 196561.5 36 208965.0 37 219837.5 38 226563.5 39 230210.0 40 234047.0 41 236600.0 42 237890.0 43 240621.5 44 242748.0 45 243789.5 46 242117.0 47 240016.0 48 237129.0 49 230496.0 50 223131.5 51 213740.5 52 201910.5 53 190557.5 54 178236.5 55 163913.0 56 148052.5 57 131422.5 58 115056.5 59 98039.0 60 82075.0 61 67048.5 62 52637.5 63 40753.5 64 30688.5 65 23089.0 66 17644.5 67 13448.5 68 10158.0 69 7256.5 70 5130.5 71 3623.5 72 2504.5 73 1765.0 74 1242.5 75 839.5 76 575.5 77 360.5 78 237.5 79 171.0 80 118.0 81 86.0 82 63.5 83 43.5 84 29.0 85 22.0 86 18.0 87 13.5 88 12.5 89 10.5 90 6.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.0031568543669704984 4 0.012678609700859893 5 0.01684224464972909 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0021507107117427183 26-27 0.035630475848292216 28-29 0.08330823860286214 30-31 0.08109471791142879 32-33 0.035454172326683284 34-35 0.0011034732942652062 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.2362665738353367 56-57 1.64441069640793E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 5.147569424172144 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.00928675181267991 74-75 0.031091520063766826 76-77 0.004852888997120364 78-79 0.0 80-81 0.0 82-83 0.004655805858373125 84-85 0.0411409335985563 86-87 0.044836885029484415 88-89 0.014895035174512634 90-91 4.82822211704745E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 113.0 20-21 353.0 22-23 755.0 24-25 2059.0 26-27 4214.0 28-29 8163.0 30-31 16687.0 32-33 21644.0 34-35 29114.0 36-37 44112.0 38-39 52909.0 40-41 53721.0 42-43 60296.0 44-45 71437.0 46-47 71228.0 48-49 64637.0 50-51 58940.0 52-53 57634.0 54-55 58043.0 56-57 61446.0 58-59 62093.0 60-61 61650.0 62-63 60602.0 64-65 57753.0 66-67 61252.0 68-69 63428.0 70-71 62970.0 72-73 57064.0 74-75 57453.0 76-77 57886.0 78-79 61645.0 80-81 62533.0 82-83 58146.0 84-85 57159.0 86-87 59558.0 88-89 62819.0 90-91 65816.0 92-93 66931.0 94-95 74143.0 96-97 177024.0 98-99 1167102.0 100-101 2607732.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.55495249429353 #Duplication Level Percentage of deduplicated Percentage of total 1 90.10283950772411 77.98846993192015 2 7.091512732548355 12.276110953568011 3 1.6921343310265493 4.3938781990789835 4 0.5822965860881827 2.016026133858078 5 0.23277587199616087 1.0073952271222728 6 0.1134249770404632 0.5890496099642176 7 0.0668404432479023 0.40497599730137934 8 0.034049799209911295 0.2357743002443284 9 0.02304500425456709 0.17951933236363618 >10 0.05951755411928838 0.738056849245492 >50 0.0010364893790328004 0.05762269521394968 >100 4.984368554306037E-4 0.09335219012184509 >500 2.8266510059135404E-5 0.019768579997611314 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7064077659299992E-5 0.0 0.0 0.0 3 0.0 1.7064077659299992E-5 0.0 0.0 0.0 4 0.0 1.7064077659299992E-5 0.0 3.4128155318599984E-5 0.0 5 0.0 1.7064077659299992E-5 0.0 3.4128155318599984E-5 0.0 6 0.0 1.7064077659299992E-5 0.0 3.4128155318599984E-5 1.7064077659299992E-5 7 0.0 1.7064077659299992E-5 0.0 5.119223297789997E-5 1.7064077659299992E-5 8 0.0 3.4128155318599984E-5 0.0 5.119223297789997E-5 1.7064077659299992E-5 9 0.0 8.532038829649995E-5 0.0 5.119223297789997E-5 1.7064077659299992E-5 10-11 0.0 8.532038829649995E-5 0.0 5.119223297789997E-5 1.7064077659299992E-5 12-13 0.0 1.0238446595579995E-4 0.0 6.825631063719997E-5 2.5596116488949987E-5 14-15 0.0 1.3651262127439994E-4 0.0 6.825631063719997E-5 5.972427180754997E-5 16-17 0.0 1.3651262127439994E-4 0.0 7.678834946684996E-5 1.1091650478544994E-4 18-19 0.0 1.3651262127439994E-4 0.0 8.532038829649995E-5 1.1944854361509993E-4 20-21 0.0 1.3651262127439994E-4 0.0 1.0238446595579995E-4 1.1944854361509993E-4 22-23 0.0 1.706407765929999E-4 0.0 1.0238446595579995E-4 1.4504466010404991E-4 24-25 0.0 1.8770485425229988E-4 0.0 1.365126212743999E-4 1.706407765929999E-4 26-27 0.0 2.047689319115999E-4 0.0 1.5357669893369992E-4 1.706407765929999E-4 28-29 0.0 2.3889708723019988E-4 0.0 5.375184462679497E-4 1.706407765929999E-4 30-31 0.0 3.0715339786739984E-4 0.0 0.0018002601930561491 1.706407765929999E-4 32-33 0.0 3.0715339786739984E-4 0.0 0.0038906097063203977 1.706407765929999E-4 34-35 0.0 3.924737861638998E-4 0.0 0.006706182520104896 1.706407765929999E-4 36-37 0.0 4.777941744603997E-4 0.0 0.011100182517374643 1.706407765929999E-4 38-39 0.0 5.460504850975996E-4 0.0 0.017678384455034793 1.962368930819499E-4 40-41 0.0 6.484349510533997E-4 0.0 0.024350438819821088 2.047689319115999E-4 42-43 0.0 6.569669898830496E-4 0.0 0.030211949495790633 2.047689319115999E-4 44-45 0.0 7.593514558388495E-4 0.0 0.03610758832707878 2.047689319115999E-4 46-47 0.0 8.873320382835995E-4 0.0 0.04249808541048662 2.133009707412499E-4 48-49 0.0 9.043961159428995E-4 0.0 0.04904215919282817 2.3889708723019986E-4 50-51 1.7064077659299992E-5 9.641203877504494E-4 0.0 0.05575687375176272 2.3889708723019986E-4 52-53 1.7064077659299992E-5 9.726524265800994E-4 0.0 0.06201939025272582 2.730252425487998E-4 54-55 1.7064077659299992E-5 9.811844654097493E-4 0.0 0.06769319607444306 3.0715339786739984E-4 56-57 1.7064077659299992E-5 9.897165042393994E-4 0.0 0.07387039218710965 3.0715339786739984E-4 58-59 1.7064077659299992E-5 0.0010238446595579995 0.0 0.08029501742583611 3.0715339786739984E-4 60-61 1.7064077659299992E-5 0.0010494407760469494 0.0 0.0866087261597771 3.0715339786739984E-4 62-63 1.7064077659299992E-5 0.0011091650478544993 0.0 0.0927347300394658 3.2421747552669985E-4 64-65 1.7064077659299992E-5 0.0011774213584916993 0.0 0.09845119605533129 3.2421747552669985E-4 66-67 1.7064077659299992E-5 0.0011774213584916993 0.0 0.10531948731319954 3.2421747552669985E-4 68-69 1.7064077659299992E-5 0.0011859533973213494 0.0 0.11214511837691954 3.2421747552669985E-4 70-71 1.7064077659299992E-5 0.0011944854361509993 0.0 0.11859533973213493 3.498135920156498E-4 72-73 1.7064077659299992E-5 0.0012030174749806492 0.0 0.12357805040865052 4.2660194148249974E-4 74-75 1.7064077659299992E-5 0.0012286135914695994 0.0 0.12784406982347551 4.2660194148249974E-4 76-77 1.7064077659299992E-5 0.0012542097079585495 0.0 0.1317602756462849 4.2660194148249974E-4 78-79 1.7064077659299992E-5 0.0012627417467881994 0.0 0.13410658632443861 4.2660194148249974E-4 80-81 1.7064077659299992E-5 0.0012627417467881994 0.0 0.13501951447921118 4.4366601914179975E-4 82-83 1.7064077659299992E-5 0.0012712737856178493 0.0 0.13567648146909422 4.6073009680109976E-4 84-85 1.7064077659299992E-5 0.0012798058244474994 0.0 0.13579593001270934 4.6073009680109976E-4 86-87 2.5596116488949987E-5 0.0012968699021067994 0.0 0.13587271836217618 4.6073009680109976E-4 88 3.4128155318599984E-5 0.0013139339797660992 0.0 0.13588125040100582 4.6073009680109976E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7230 0.0 49.60321 1 GTATCAA 13475 0.0 35.968884 1 ATCAACG 16185 0.0 29.267977 3 TCGACGG 220 3.6958372E-6 29.081692 94 TCAACGC 16360 0.0 29.053576 4 CAACGCA 16515 0.0 28.727242 5 TATCAAC 16980 0.0 28.161068 2 AACGCAG 17125 0.0 27.722971 6 ACGCAGA 20065 0.0 23.600124 7 CGCAGAG 20310 0.0 23.355461 8 GTACATG 18705 0.0 21.542465 1 TACATGG 18420 0.0 21.345991 2 TGCGCGA 345 5.0000635E-6 21.194109 94 ACATGGG 18470 0.0 20.913956 3 GCAGAGT 23875 0.0 19.833988 9 CATGGGG 12755 0.0 19.317928 4 GAGTACT 14755 0.0 17.961224 12-13 AGAGTAC 21850 0.0 17.765583 10-11 CAGAGTA 23380 0.0 17.663498 10-11 AGTACTT 15785 0.0 16.351465 12-13 >>END_MODULE