##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139892_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4480739 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.717427861787975 33.0 33.0 33.0 33.0 33.0 2 32.73128271921217 33.0 33.0 33.0 33.0 33.0 3 32.643194794430116 33.0 33.0 33.0 33.0 33.0 4 36.619841950178305 37.0 37.0 37.0 37.0 37.0 5 36.6748163639971 37.0 37.0 37.0 37.0 37.0 6 36.681800256609456 37.0 37.0 37.0 37.0 37.0 7 36.66532551884856 37.0 37.0 37.0 37.0 37.0 8 36.66901665104796 37.0 37.0 37.0 37.0 37.0 9 36.67251585062196 37.0 37.0 37.0 37.0 37.0 10-11 36.639153162011894 37.0 37.0 37.0 37.0 37.0 12-13 36.613091501201026 37.0 37.0 37.0 37.0 37.0 14-15 38.7807614993866 40.0 37.0 40.0 37.0 40.0 16-17 38.7369279933511 40.0 37.0 40.0 37.0 40.0 18-19 38.74502766173169 40.0 37.0 40.0 37.0 40.0 20-21 38.76798039707593 40.0 37.0 40.0 37.0 40.0 22-23 38.80332667815871 40.0 37.0 40.0 37.0 40.0 24-25 38.82505874043098 40.0 37.0 40.0 37.0 40.0 26-27 38.54783266722248 40.0 37.0 40.0 37.0 40.0 28-29 38.52143770722135 40.0 37.0 40.0 37.0 40.0 30-31 38.54479664424643 40.0 37.0 40.0 37.0 40.0 32-33 38.54041981327467 40.0 37.0 40.0 37.0 40.0 34-35 38.36807876963881 40.0 37.0 40.0 37.0 40.0 36-37 38.433831373416496 40.0 37.0 40.0 37.0 40.0 38-39 38.35858592080106 40.0 37.0 40.0 37.0 40.0 40-41 38.374286954126354 40.0 37.0 40.0 37.0 40.0 42-43 38.33199452265086 40.0 37.0 40.0 37.0 40.0 44-45 38.26174352296043 40.0 37.0 40.0 37.0 40.0 46-47 38.18946199452632 40.0 37.0 40.0 37.0 40.0 48-49 37.96506461730398 40.0 37.0 40.0 33.0 40.0 50-51 38.04797802303364 40.0 37.0 40.0 33.0 40.0 52-53 38.01539509517413 40.0 37.0 40.0 33.0 40.0 54-55 33.425639191858465 38.5 33.0 40.0 10.5 40.0 56-57 36.649648819422815 37.0 35.0 40.0 30.0 40.0 58-59 37.45623612314477 38.5 37.0 40.0 33.0 40.0 60-61 37.49300545223121 40.0 37.0 40.0 33.0 40.0 62-63 37.26365212373422 37.0 37.0 40.0 33.0 40.0 64-65 32.253712522852766 37.0 33.0 40.0 8.5 40.0 66-67 35.41445713156065 37.0 33.0 40.0 30.0 40.0 68-69 36.32159069922472 37.0 37.0 40.0 33.0 40.0 70-71 36.25635668198541 37.0 37.0 40.0 33.0 40.0 72-73 35.60324409674901 37.0 37.0 37.0 33.0 40.0 74-75 35.671738050033525 37.0 35.0 37.0 33.0 40.0 76-77 33.85695218946621 35.0 33.0 37.0 30.0 37.0 78-79 35.36535203233541 37.0 33.0 37.0 33.0 37.0 80-81 35.56487570832322 37.0 35.0 37.0 33.0 37.0 82-83 35.49319082074916 37.0 35.0 37.0 33.0 37.0 84-85 35.37247143207433 37.0 33.0 37.0 33.0 37.0 86-87 35.26850744632716 37.0 33.0 37.0 33.0 37.0 88-89 35.18384327391093 37.0 33.0 37.0 33.0 37.0 90-91 35.09505404415397 37.0 33.0 37.0 33.0 37.0 92-93 35.037143370516446 37.0 33.0 37.0 33.0 37.0 94-95 34.98816207796689 37.0 33.0 37.0 33.0 37.0 96-97 34.963318811830405 37.0 33.0 37.0 33.0 37.0 98-99 34.93540926402864 37.0 33.0 37.0 33.0 37.0 100 34.89012223501106 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 18.0 21 128.0 22 417.0 23 1283.0 24 3071.0 25 6464.0 26 11532.0 27 19050.0 28 28173.0 29 40213.0 30 55053.0 31 74205.0 32 100564.0 33 138169.0 34 200171.0 35 331015.0 36 702547.0 37 1101760.0 38 1589624.0 39 77280.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.081986922246536 20.039863959940536 12.920167856239786 24.95798126157315 2 14.432574626640829 21.49779310957411 41.17653360305075 22.893098660734314 3 17.857451330617472 26.694570736124202 30.823291312816238 24.62468662044209 4 11.742442927577503 18.085970954931998 39.59491453505593 30.57667158243457 5 12.617973961688515 38.20079580108455 36.37417204499807 12.807058192228862 6 29.276085931360875 38.75563829984295 19.089351109270144 12.878924659526028 7 25.646260583354664 32.84980446305843 23.942970121669664 17.560964831917236 8 24.19495980462151 36.79953239856194 21.999830831476682 17.00567696533987 9 25.466200999433354 16.063354727869665 21.2242891183798 37.24615515431718 10-11 23.685579543910055 26.700372416246516 29.822100774001786 19.79194726584164 12-13 24.58197185776721 24.27348479793177 29.660553761332675 21.483989582968345 14-15 21.699233095255046 25.716717711074 26.881804541616905 25.702244652054045 16-17 21.57069403060522 28.920385677451865 27.5232612298998 21.985659062043116 18-19 21.466860712038795 28.07295850081873 29.062114530661127 21.39806625648135 20-21 22.104339760384395 27.40405120482936 28.869716575462224 21.621892459324023 22-23 21.748134653582028 27.585844772197728 28.821820217411148 21.844200356809093 24-25 21.65059325279381 27.64912188272861 29.01084797773679 21.689436886740783 26-27 21.70537630973642 27.751785436840176 28.821980841633575 21.720857411789833 28-29 21.409500413530154 27.58456344948111 28.950543672496643 22.055392464492098 30-31 21.66330502582011 27.502234965760763 28.90839042486131 21.92606958355782 32-33 21.482973744025795 27.781326192416934 28.95054876494224 21.785151298615027 34-35 21.620056201061654 27.984790985773735 28.939743148702124 21.455409664462486 36-37 21.71373666038725 27.759064867107693 28.664175471580606 21.86302300092445 38-39 21.65019191161532 27.694867470531882 28.87576489934167 21.779175718511127 40-41 21.79986042069916 27.570497628160005 28.83891192298669 21.790730028154144 42-43 21.77550315190572 27.62621299722239 28.80332149853848 21.794962352333407 44-45 21.726731328913118 27.86973010859472 28.565124177844964 21.8384143846472 46-47 21.986630494321428 27.62937529826904 28.214394023099835 22.169600184309697 48-49 21.84805089448423 27.736807977469258 28.262255456930564 22.152885671115946 50-51 21.640099817273082 27.93305441334601 28.361528679504648 22.065317089876256 52-53 21.78416082517975 27.960818879528 28.36600056074412 21.889019734548125 54-55 22.82039201299593 27.8590886330235 27.499106887285844 21.821412466694724 56-57 21.84702624430433 28.020270798755764 28.012203637737077 22.12049931920283 58-59 21.610264389431464 28.246591441045783 28.24173300436429 21.901411165158464 60-61 21.931584595789523 28.43614146693222 27.816943278278316 21.815330658999937 62-63 21.623923557115212 28.553507802330408 27.84608806640928 21.976480574145103 64-65 22.273386139161815 28.391411696372543 27.422944627128583 21.91225753733706 66-67 21.710400444527053 28.424507229474493 27.671601223488494 22.19349110250996 68-69 21.800752669705084 28.28010843198896 27.689371334851227 22.22976756345473 70-71 21.8223199162268 28.018755829595516 27.63847659446506 22.520447659712623 72-73 21.92166411595186 27.984639178171804 27.610013877503768 22.483682828372565 74-75 21.73074264114297 28.11466066570207 27.677965834130813 22.476630859024148 76-77 21.887160723758143 28.00946431373617 27.51566027877751 22.587714683728176 78-79 21.902153896140746 28.071474590434818 27.46950585124909 22.556865662175348 80-81 21.871624858975338 28.089071973582193 27.481565948574872 22.557737218867604 82-83 21.860183315430415 27.989824204508114 27.69006733730738 22.459925142754095 84-85 22.006481178046535 28.010366075302823 27.63847107460079 22.344681672049852 86-87 21.81795695687306 28.00319069436296 27.76786019350338 22.4109921552606 88-89 21.789232602958386 28.101220763850694 27.771346515196022 22.3382001179949 90-91 21.881401719055475 27.861480363715064 27.875059427137383 22.38205849009208 92-93 21.84715934124512 27.82924094327625 27.918834453974622 22.404765261504007 94-95 21.677686851683024 27.9191235917637 28.109195137752057 22.29399441880122 96-97 21.747455344663095 28.01414162532198 28.200742588268092 22.037660441746837 98-99 22.937761269710062 29.983190465404796 28.29308465395214 18.785963610933006 100 21.893047054562924 30.795872192879603 22.14841747075001 25.162663281807458 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 471.0 1 470.5 2 894.0 3 1440.0 4 2129.5 5 3791.0 6 5126.0 7 5822.5 8 6143.5 9 5802.0 10 5192.5 11 4641.5 12 4929.5 13 6501.0 14 10244.5 15 15246.5 16 19214.5 17 21479.0 18 22105.5 19 21515.0 20 20317.0 21 19583.0 22 20070.5 23 22362.0 24 26887.5 25 33472.0 26 42446.5 27 52622.5 28 62662.0 29 73567.0 30 84167.0 31 93656.5 32 103534.5 33 113293.5 34 122659.5 35 131099.0 36 140176.0 37 149684.5 38 156940.0 39 162353.0 40 167680.5 41 172624.0 42 175803.0 43 179895.5 44 184365.0 45 189400.0 46 196301.5 47 202518.5 48 201081.0 49 194228.0 50 187594.5 51 177713.0 52 166130.5 53 155631.0 54 145537.0 55 134378.5 56 122939.0 57 110274.5 58 96372.0 59 83175.5 60 69365.0 61 55769.0 62 44209.0 63 34502.0 64 25853.0 65 18846.0 66 14158.0 67 10970.5 68 8400.0 69 6126.5 70 4430.5 71 3162.5 72 2254.5 73 1565.5 74 1075.0 75 746.5 76 511.0 77 339.0 78 205.0 79 114.5 80 72.5 81 51.5 82 38.0 83 30.0 84 22.5 85 15.5 86 11.5 87 9.5 88 7.0 89 5.0 90 3.5 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.003347662070921783 4 0.013346012789408175 5 0.01618036667612195 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0017189128746685932 26-27 0.035808164708178526 28-29 0.08200132851314351 30-31 0.08053160482245227 32-33 0.03561484058629095 34-35 9.790245674399386E-4 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.262145387902027 56-57 4.911511145508061E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 5.42117419816358 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.010242190800574586 74-75 0.03470416366978777 76-77 0.005487174451715753 78-79 0.0 80-81 0.0 82-83 0.004019976145290491 84-85 0.04145518966614725 86-87 0.04522922195959727 88-89 0.014750882281603801 90-91 2.9975848458896667E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 92.0 20-21 286.0 22-23 549.0 24-25 1152.0 26-27 2730.0 28-29 5065.0 30-31 10395.0 32-33 13411.0 34-35 17646.0 36-37 26798.0 38-39 29713.0 40-41 32449.0 42-43 35191.0 44-45 41128.0 46-47 41138.0 48-49 38359.0 50-51 33868.0 52-53 34533.0 54-55 34536.0 56-57 37879.0 58-59 41696.0 60-61 44312.0 62-63 49744.0 64-65 45405.0 66-67 49150.0 68-69 44754.0 70-71 43649.0 72-73 40102.0 74-75 39615.0 76-77 39856.0 78-79 43270.0 80-81 44381.0 82-83 41423.0 84-85 40315.0 86-87 42049.0 88-89 46055.0 90-91 48320.0 92-93 49507.0 94-95 56685.0 96-97 143103.0 98-99 261540.0 100-101 2788890.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.71901763850292 #Duplication Level Percentage of deduplicated Percentage of total 1 91.0911603236035 79.90427099137872 2 6.506553198196337 11.41496909516884 3 1.4620816432902688 3.847570963701312 4 0.4711808201627629 1.653260746991267 5 0.19414334349282755 0.8515031686122635 6 0.09910853595522144 0.5216222048149363 7 0.05557794884158757 0.3412670152322923 8 0.031405890270776116 0.2203915074092078 9 0.024649327398891065 0.19459933063925025 >10 0.06211738558005263 0.8150589438333096 >50 0.0012937466659716933 0.07390247148814146 >100 6.916019176228311E-4 0.14283061345021286 >500 3.6234624215889866E-5 0.01875294728023719 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.2317747139478554E-5 0.0 0.0 0.0 3 0.0 2.2317747139478554E-5 0.0 0.0 0.0 4 0.0 2.2317747139478554E-5 0.0 2.2317747139478554E-5 0.0 5 2.2317747139478554E-5 2.2317747139478554E-5 0.0 2.2317747139478554E-5 0.0 6 2.2317747139478554E-5 2.2317747139478554E-5 0.0 2.2317747139478554E-5 0.0 7 4.463549427895711E-5 4.463549427895711E-5 0.0 2.2317747139478554E-5 0.0 8 4.463549427895711E-5 4.463549427895711E-5 0.0 2.2317747139478554E-5 0.0 9 4.463549427895711E-5 1.1158873569739278E-4 0.0 4.463549427895711E-5 2.2317747139478554E-5 10-11 6.695324141843567E-5 1.2274760926713206E-4 0.0 1.004298621276535E-4 2.2317747139478554E-5 12-13 1.1158873569739278E-4 1.3390648283687133E-4 0.0 1.450653564066106E-4 3.347662070921783E-5 14-15 1.2274760926713206E-4 1.7854197711582843E-4 0.0 1.562242299763499E-4 6.695324141843567E-5 16-17 1.450653564066106E-4 1.7854197711582843E-4 0.0 2.454952185342641E-4 6.695324141843567E-5 18-19 1.562242299763499E-4 1.7854197711582843E-4 0.0 3.347662070921783E-4 6.695324141843567E-5 20-21 1.7854197711582843E-4 1.7854197711582843E-4 0.0 5.579436784869639E-4 6.695324141843567E-5 22-23 1.8970085068556773E-4 2.1201859782504626E-4 0.0 7.030090348935745E-4 1.004298621276535E-4 24-25 2.2317747139478556E-4 2.454952185342641E-4 0.0 7.364856556027923E-4 1.3390648283687133E-4 26-27 2.454952185342641E-4 2.6781296567374266E-4 0.0 9.2618650628836E-4 1.562242299763499E-4 28-29 2.454952185342641E-4 2.6781296567374266E-4 0.0 0.0019528028747043736 1.562242299763499E-4 30-31 2.6781296567374266E-4 3.347662070921783E-4 0.0 0.00509960522137085 1.562242299763499E-4 32-33 2.6781296567374266E-4 3.347662070921783E-4 0.0 0.011426686535413021 1.562242299763499E-4 34-35 2.901307128132212E-4 4.01719448510614E-4 0.0 0.018378664769360592 1.562242299763499E-4 36-37 3.124484599526998E-4 4.6867268992904966E-4 0.0 0.039725589908271824 1.562242299763499E-4 38-39 3.124484599526998E-4 4.6867268992904966E-4 0.0 0.0957989295962117 1.562242299763499E-4 40-41 3.124484599526998E-4 4.6867268992904966E-4 0.0 0.18156603185322778 1.562242299763499E-4 42-43 3.124484599526998E-4 4.6867268992904966E-4 0.0 0.23139040234211367 1.562242299763499E-4 44-45 3.124484599526998E-4 5.021493106382675E-4 0.0 0.2463209751784248 1.562242299763499E-4 46-47 3.124484599526998E-4 5.356259313474853E-4 0.0 0.2614970432332702 1.7854197711582843E-4 48-49 3.124484599526998E-4 5.356259313474853E-4 0.0 0.27713062510447495 1.7854197711582843E-4 50-51 3.124484599526998E-4 6.025791727659209E-4 0.0 0.2942371782868853 1.7854197711582843E-4 52-53 3.124484599526998E-4 6.025791727659209E-4 0.0 0.3467285195589388 1.7854197711582843E-4 54-55 3.124484599526998E-4 6.025791727659209E-4 0.0 0.38244807385567425 1.7854197711582843E-4 56-57 3.124484599526998E-4 6.025791727659209E-4 0.0 0.41810067491099123 1.7854197711582843E-4 58-59 3.124484599526998E-4 6.248969199053996E-4 0.0 0.4507626978496181 1.7854197711582843E-4 60-61 3.124484599526998E-4 6.248969199053996E-4 0.0 0.4641533461333053 1.7854197711582843E-4 62-63 3.124484599526998E-4 6.248969199053996E-4 0.0 0.47833627444044385 1.7854197711582843E-4 64-65 3.124484599526998E-4 6.472146670448781E-4 0.0 0.48552258901935597 1.8970085068556773E-4 66-67 3.124484599526998E-4 6.472146670448781E-4 0.0 0.4924299317590246 2.2317747139478556E-4 68-69 3.124484599526998E-4 6.695324141843567E-4 0.0 0.4981209572795916 2.2317747139478556E-4 70-71 3.124484599526998E-4 6.695324141843567E-4 0.0 0.5037338706851704 2.2317747139478556E-4 72-73 3.124484599526998E-4 6.695324141843567E-4 0.0 0.5089115880215295 2.454952185342641E-4 74-75 3.124484599526998E-4 6.806912877540959E-4 0.0 0.5130738478630422 2.454952185342641E-4 76-77 3.124484599526998E-4 7.25326782033053E-4 0.0 0.5160644259797323 2.454952185342641E-4 78-79 3.124484599526998E-4 7.364856556027923E-4 0.0 0.5184189483029473 2.454952185342641E-4 80-81 3.124484599526998E-4 7.364856556027923E-4 0.0 0.5192112283263988 2.566540921040034E-4 82-83 3.2360733352243906E-4 7.364856556027923E-4 0.0 0.5197691720048858 2.6781296567374266E-4 84-85 3.347662070921783E-4 7.364856556027923E-4 0.0 0.5199142373612924 2.6781296567374266E-4 86-87 3.347662070921783E-4 7.588034027422709E-4 0.0 0.5200035083498503 2.6781296567374266E-4 88 3.347662070921783E-4 8.03438897021228E-4 0.0 0.5200035083498503 2.6781296567374266E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5210 0.0 36.73599 1 GTATCAA 8885 0.0 32.615685 1 TCAACGC 9900 0.0 28.935938 4 ATCAACG 9860 0.0 28.843117 3 CAACGCA 10245 0.0 28.041006 5 AACGCAG 10600 0.0 27.020248 6 TATCAAC 10980 0.0 26.392565 2 ACGCAGA 12200 0.0 23.408562 7 CGCAGAG 12425 0.0 22.951256 8 GTACATG 10640 0.0 22.63158 1 TACATGG 10425 0.0 22.580603 2 ACATGGG 10630 0.0 21.637398 3 CTTATAC 7125 0.0 20.452703 1 CATGGGG 8260 0.0 19.803402 4 GCAGAGT 14580 0.0 19.35965 9 GAGTACT 8850 0.0 18.268812 12-13 AGAGTAC 12460 0.0 18.006271 10-11 TATACAC 9095 0.0 17.71159 3 CAGAGTA 14045 0.0 16.594881 10-11 TTATACA 9215 0.0 16.17438 2 >>END_MODULE