##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139891_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6363819 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.566996955758796 33.0 33.0 33.0 33.0 33.0 2 32.56512292382923 33.0 33.0 33.0 33.0 33.0 3 32.56664606582934 33.0 33.0 33.0 33.0 33.0 4 36.466552709937226 37.0 37.0 37.0 37.0 37.0 5 36.4990767336406 37.0 37.0 37.0 37.0 37.0 6 36.49250033666891 37.0 37.0 37.0 37.0 37.0 7 36.47200352492741 37.0 37.0 37.0 37.0 37.0 8 36.45601611233758 37.0 37.0 37.0 37.0 37.0 9 36.49484515508691 37.0 37.0 37.0 37.0 37.0 10-11 36.44775951358767 37.0 37.0 37.0 37.0 37.0 12-13 36.37988666868118 37.0 37.0 37.0 37.0 37.0 14-15 38.41631235897815 40.0 37.0 40.0 37.0 40.0 16-17 38.377761843949365 40.0 37.0 40.0 37.0 40.0 18-19 38.38077780024856 40.0 37.0 40.0 37.0 40.0 20-21 38.37637880167459 40.0 37.0 40.0 37.0 40.0 22-23 38.37023673242611 40.0 37.0 40.0 37.0 40.0 24-25 38.37359218370631 40.0 37.0 40.0 37.0 40.0 26-27 38.22762346932959 40.0 37.0 40.0 37.0 40.0 28-29 38.15098970412847 40.0 37.0 40.0 35.0 40.0 30-31 38.11369127632837 40.0 37.0 40.0 35.0 40.0 32-33 38.040601330071155 40.0 37.0 40.0 33.0 40.0 34-35 38.00697654809394 40.0 37.0 40.0 33.0 40.0 36-37 37.972650960898065 40.0 37.0 40.0 33.0 40.0 38-39 37.93062017299684 40.0 37.0 40.0 33.0 40.0 40-41 37.902820609956535 40.0 37.0 40.0 33.0 40.0 42-43 37.81326500085728 40.0 37.0 40.0 33.0 40.0 44-45 37.77026341363245 40.0 37.0 40.0 33.0 40.0 46-47 37.74292496731944 40.0 37.0 40.0 33.0 40.0 48-49 37.72241930819364 40.0 37.0 40.0 33.0 40.0 50-51 37.66786401199497 40.0 37.0 40.0 33.0 40.0 52-53 37.572711060371304 40.0 37.0 40.0 33.0 40.0 54-55 37.37515720846906 40.0 37.0 40.0 33.0 40.0 56-57 37.20981312717205 40.0 37.0 40.0 33.0 40.0 58-59 37.15402336646379 37.0 37.0 40.0 33.0 40.0 60-61 37.02865421788056 37.0 37.0 40.0 33.0 40.0 62-63 36.85429824044855 37.0 37.0 40.0 33.0 40.0 64-65 36.7150620058993 37.0 37.0 40.0 33.0 40.0 66-67 36.50541404443801 37.0 37.0 40.0 33.0 40.0 68-69 36.29653119474959 37.0 37.0 40.0 33.0 40.0 70-71 36.04464498235228 37.0 37.0 38.5 33.0 40.0 72-73 35.83990655523621 37.0 35.0 37.0 33.0 40.0 74-75 35.663381183018366 37.0 33.0 37.0 33.0 40.0 76-77 33.87219029116872 35.0 33.0 37.0 27.0 37.0 78-79 35.10362982914594 37.0 33.0 37.0 33.0 37.0 80-81 35.167612505639724 37.0 33.0 37.0 33.0 37.0 82-83 35.048207933705115 37.0 33.0 37.0 33.0 37.0 84-85 34.889321445359954 37.0 33.0 37.0 33.0 37.0 86-87 34.76344928943106 37.0 33.0 37.0 33.0 37.0 88-89 34.68683561578297 37.0 33.0 37.0 33.0 37.0 90-91 34.60042886977611 37.0 33.0 37.0 33.0 37.0 92-93 34.531963624170785 37.0 33.0 37.0 33.0 37.0 94-95 34.523672977533636 37.0 33.0 37.0 33.0 37.0 96-97 34.52378625854437 37.0 33.0 37.0 33.0 37.0 98-99 34.52946930368056 37.0 33.0 37.0 33.0 37.0 100 34.53740248084281 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 6.0 20 53.0 21 273.0 22 1052.0 23 2784.0 24 6368.0 25 12396.0 26 21566.0 27 34655.0 28 51718.0 29 71981.0 30 97847.0 31 130616.0 32 173013.0 33 229777.0 34 313832.0 35 448360.0 36 757469.0 37 1737293.0 38 2200371.0 39 72386.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.46888542870248 20.10072882336848 12.951656858876722 24.478728889052313 2 14.840884066627288 21.81869094642698 40.511680171921924 22.828744815023807 3 18.046144932783285 26.678807175376924 30.645733324596442 24.629314567243348 4 12.102371233374173 17.867997188480693 39.54230942143389 30.487322156711244 5 12.789207235466629 38.286129759504476 36.08788999184295 12.836773013185951 6 29.55004191668048 38.5311640894652 18.955720742982002 12.963073250872315 7 25.920158948581033 32.90550846904979 23.887700137291773 17.286632445077398 8 24.434038743088074 36.71064497591776 21.708081263782013 17.147235017212147 9 25.74578252461297 16.08235557925202 21.304942833854952 36.866919062280054 10-11 23.906210592066753 26.808221599770576 29.630523003429595 19.655044804733077 12-13 24.742119569402064 24.496048117147577 29.558666344427436 21.203165969022923 14-15 21.755057602602154 25.83978290649519 27.066190543615377 25.33896894728728 16-17 21.383786999598826 28.941583662263177 27.78051984193768 21.89410949620032 18-19 21.427235752619612 28.175879923674763 29.418828536763854 20.97805578694177 20-21 22.157348935398538 27.48531413498204 29.275683802978254 21.08165312664117 22-23 21.852884249090696 27.414596819920817 29.152056415162896 21.58046251582559 24-25 21.611141639903327 27.553664482006734 29.250419997937733 21.584773880152206 26-27 21.595487883841358 27.70597406795816 29.14945060059555 21.54908744760493 28-29 21.567027002492033 27.777091206559284 29.142370633135002 21.513511157813685 30-31 21.797087580395296 27.662984063444355 29.04902153395709 21.490906822203257 32-33 21.59217469282419 27.8414023660972 28.99341971706607 21.57300322401253 34-35 21.744578320123757 27.834470088101433 29.003424085472325 21.41752750630249 36-37 21.71737305992028 27.773937398898347 28.936722268581683 21.571967272599693 38-39 21.541415481017566 27.92617621650468 29.010622548135462 21.521785754342297 40-41 21.808758312532188 27.82623675871625 28.838130253828286 21.52687467492328 42-43 21.722990297364248 27.888599758256294 28.68369862184975 21.70471132252971 44-45 21.814581378518618 28.001143502615683 28.504038915130565 21.68023620373514 46-47 21.896140920204747 27.999709106481173 28.24284843330757 21.861301540006504 48-49 21.80533866465124 28.13590549537753 28.190981001540393 21.86777483843084 50-51 21.815194505361912 28.252247308630217 28.121394084732753 21.811164101275114 52-53 22.000141316568754 28.12877391551225 28.039043846313895 21.8320409216051 54-55 21.944539294656284 28.048437692671936 28.046654070406085 21.96036894226569 56-57 21.919955245863022 28.212605690885933 27.951023506826584 21.916415556424468 58-59 21.927449734251184 28.21315907594082 27.9672924803083 21.8920987094997 60-61 21.975577934916977 28.19765117322187 27.990909509745826 21.83586138211533 62-63 21.930025125829637 28.270585885018544 27.957702566420206 21.841686422731613 64-65 21.91287675900169 28.184223561266116 27.947110074822696 21.955789604909494 66-67 21.98691077687367 28.215650148604045 27.825948443464853 21.971490631057428 68-69 21.962493282687475 28.24231011248341 27.8567616353039 21.93843496952522 70-71 21.958944093026787 28.03483711645412 27.928100564019687 22.078118226499406 72-73 22.018539102635913 28.071341166872486 27.874546431659862 22.035573298831732 74-75 21.87095816012151 28.212586839207077 27.84450864940092 22.071946351270494 76-77 22.010560295059676 28.139520537621998 27.745838371285025 22.104080796033305 78-79 21.94244206465784 28.19220194078303 27.727079569775633 22.138276424783502 80-81 21.945001044689132 28.198898991914263 27.738253923868083 22.117846039528523 82-83 21.989613136023994 28.169509009004535 27.802748961263912 22.038128893707558 84-85 22.07674661222743 28.130949766775178 27.755403102103326 22.03690051889407 86-87 21.93401218331799 28.16517163369291 27.827954796520025 22.072861386469075 88-89 21.97084646917616 28.18651563642901 27.759856726884696 22.082781167510138 90-91 22.035120267284324 28.185557389048093 27.779450290923208 21.999872052744372 92-93 22.050677426464617 28.161505579760764 27.775863894014773 22.011953099759847 94-95 21.918269307951814 28.225844770535325 27.84444967126518 22.01143625024768 96-97 21.9922250165465 28.3372077610681 27.881810211315205 21.788757011070192 98-99 23.05592442654748 30.24577261896015 28.096321027080208 18.60198192741216 100 21.965477636449233 31.145812398307392 22.026170961960425 24.862539003282947 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1754.0 1 1529.5 2 2009.0 3 2940.5 4 3962.0 5 6279.0 6 8362.5 7 9790.5 8 10779.5 9 10755.5 10 9737.5 11 8629.0 12 9209.0 13 11832.0 14 17557.5 15 25276.5 16 31586.5 17 35323.0 18 36089.0 19 34453.0 20 32077.5 21 30051.0 22 29940.0 23 32849.0 24 39037.5 25 48839.5 26 61727.0 27 75753.5 28 90218.5 29 105666.5 30 120437.5 31 133978.0 32 148063.5 33 161805.5 34 174627.0 35 186551.0 36 199956.0 37 212510.0 38 222001.5 39 230468.0 40 238936.0 41 245713.5 42 249639.5 43 254240.5 44 258158.5 45 262349.0 46 264995.5 47 264153.0 48 262491.0 49 257363.5 50 250763.0 51 242923.0 52 232024.5 53 219614.5 54 206713.5 55 191971.0 56 174658.5 57 156392.5 58 138397.0 59 120234.0 60 100559.0 61 81878.0 62 65282.0 63 50645.5 64 38255.5 65 28938.0 66 21958.5 67 16754.0 68 12860.0 69 9361.0 70 6638.5 71 4814.5 72 3472.5 73 2445.0 74 1738.0 75 1215.5 76 810.0 77 536.5 78 366.0 79 252.0 80 175.5 81 123.0 82 85.0 83 57.5 84 40.0 85 29.0 86 21.0 87 14.5 88 8.5 89 6.5 90 5.0 91 4.0 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 6.285533890891617E-5 7 0.0 8 0.0 9 0.0 10-11 0.00147710046435953 12-13 2.6713519036289374E-4 14-15 0.007511212999615483 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 147.0 20-21 413.0 22-23 786.0 24-25 1974.0 26-27 3045.0 28-29 6961.0 30-31 14009.0 32-33 18161.0 34-35 24979.0 36-37 36754.0 38-39 43501.0 40-41 43690.0 42-43 50723.0 44-45 60156.0 46-47 59654.0 48-49 56116.0 50-51 50320.0 52-53 48949.0 54-55 52109.0 56-57 56242.0 58-59 56053.0 60-61 54665.0 62-63 52093.0 64-65 54959.0 66-67 59253.0 68-69 60122.0 70-71 59338.0 72-73 55990.0 74-75 57193.0 76-77 56666.0 78-79 60860.0 80-81 61734.0 82-83 58754.0 84-85 58786.0 86-87 61445.0 88-89 66944.0 90-91 68510.0 92-93 71840.0 94-95 83225.0 96-97 211062.0 98-99 370141.0 100-101 3995497.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.72819103368208 #Duplication Level Percentage of deduplicated Percentage of total 1 91.00566049874351 79.83761969380186 2 6.651329223707898 11.670181615307177 3 1.4141820416208575 3.721908969111513 4 0.45284863264305997 1.589103654154083 5 0.19361190561513134 0.8492611121099733 6 0.10124982482441387 0.5329478384593815 7 0.056255058623938724 0.3454608170700316 8 0.032466984591480154 0.22786158612231863 9 0.022435829701760533 0.17714292786676855 >10 0.06845263649588774 0.8970377837716734 >50 0.0011663178365039304 0.06713631146159045 >100 3.154616707275015E-4 0.07170154174699517 >500 2.5583924793533357E-5 0.012636149016649669 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5713834727229042E-5 0.0 0.0 0.0 3 0.0 3.1427669454458085E-5 0.0 0.0 0.0 4 0.0 7.856917363614522E-5 0.0 0.0 0.0 5 0.0 7.856917363614522E-5 0.0 0.0 0.0 6 0.0 7.856917363614522E-5 0.0 0.0 0.0 7 0.0 7.856917363614522E-5 0.0 0.0 0.0 8 0.0 7.856917363614522E-5 0.0 0.0 0.0 9 0.0 1.4142451254506137E-4 0.0 0.0 0.0 10-11 7.856917363614521E-6 1.4142451254506137E-4 0.0 2.3570752090843565E-5 0.0 12-13 1.5713834727229042E-5 1.4142451254506137E-4 0.0 4.714150418168713E-5 7.856917363614521E-6 14-15 3.1427669454458085E-5 2.199936861812066E-4 0.0 8.642609099975975E-5 1.5713834727229042E-5 16-17 4.714150418168713E-5 2.199936861812066E-4 0.0 9.428300836337426E-5 4.714150418168713E-5 18-19 4.714150418168713E-5 2.4356443827205015E-4 0.0 1.0999684309060331E-4 4.714150418168713E-5 20-21 4.714150418168713E-5 2.8284902509012274E-4 0.0 1.5713834727229043E-4 6.285533890891617E-5 22-23 4.714150418168713E-5 3.299905292718099E-4 0.0 1.5713834727229043E-4 6.285533890891617E-5 24-25 4.714150418168713E-5 3.299905292718099E-4 0.0 2.1213676881759209E-4 6.285533890891617E-5 26-27 4.714150418168713E-5 3.299905292718099E-4 0.0 2.592782729992792E-4 6.285533890891617E-5 28-29 4.714150418168713E-5 3.3784744663542445E-4 0.0 5.26413463362173E-4 6.285533890891617E-5 30-31 4.714150418168713E-5 3.4570436399903893E-4 0.0 0.0014928142990867591 6.285533890891617E-5 32-33 6.285533890891617E-5 3.4570436399903893E-4 0.0 0.0029463440113554453 6.285533890891617E-5 34-35 7.856917363614522E-5 3.61418198726268E-4 0.0 0.004934144104349919 6.285533890891617E-5 36-37 7.856917363614522E-5 3.7713203345349705E-4 0.0 0.0076526375121605435 6.285533890891617E-5 38-39 7.856917363614522E-5 3.7713203345349705E-4 0.0 0.011753948375967323 7.071225627253069E-5 40-41 1.099968430906033E-4 4.085597029079551E-4 0.0 0.015721691644592656 7.856917363614522E-5 42-43 1.099968430906033E-4 4.321304549987987E-4 0.0 0.01975229025212691 7.856917363614522E-5 44-45 1.2571067781783234E-4 4.871288765441003E-4 0.0 0.024230733149387184 9.428300836337426E-5 46-47 1.4142451254506137E-4 5.185565459985584E-4 0.0 0.029267017179464092 9.428300836337426E-5 48-49 1.4142451254506137E-4 5.185565459985584E-4 0.0 0.034028309101814494 9.428300836337426E-5 50-51 1.4142451254506137E-4 5.656980501802455E-4 0.0 0.03876603027207405 9.428300836337426E-5 52-53 1.4142451254506137E-4 5.656980501802455E-4 0.0 0.04349589452496999 9.428300836337426E-5 54-55 1.4142451254506137E-4 5.971257196347036E-4 0.0 0.048068620430593643 9.428300836337426E-5 56-57 1.4142451254506137E-4 6.285533890891617E-4 0.0 0.053136332130125 9.428300836337426E-5 58-59 1.4142451254506137E-4 6.442672238163908E-4 0.0 0.05841618059847396 9.428300836337426E-5 60-61 1.4142451254506137E-4 6.599810585436198E-4 0.0 0.06364103064527762 9.428300836337426E-5 62-63 1.4142451254506137E-4 6.599810585436198E-4 0.0 0.06875588384899067 1.099968430906033E-4 64-65 1.4142451254506137E-4 7.22836397452536E-4 0.0 0.07369788487070422 1.099968430906033E-4 66-67 1.4142451254506137E-4 7.22836397452536E-4 0.0 0.07911130093423462 1.099968430906033E-4 68-69 1.4142451254506137E-4 7.306933148161505E-4 0.0 0.0846818553450373 1.099968430906033E-4 70-71 1.4142451254506137E-4 7.464071495433796E-4 0.0 0.08912101365547952 1.099968430906033E-4 72-73 1.4142451254506137E-4 7.542640669069941E-4 0.0 0.09340303361864943 1.099968430906033E-4 74-75 1.5713834727229043E-4 7.69977901634223E-4 0.0 0.09681293575445814 1.099968430906033E-4 76-77 1.7285218199951946E-4 8.092624884522957E-4 0.0 0.1006863960147201 1.099968430906033E-4 78-79 1.7285218199951946E-4 8.249763231795248E-4 0.0 0.10316918190162228 1.1785376045421781E-4 80-81 1.7285218199951946E-4 8.328332405431393E-4 0.0 0.10383701987752952 1.2571067781783234E-4 82-83 1.7285218199951946E-4 8.485470752703683E-4 0.0 0.1043712902582553 1.4142451254506137E-4 84-85 1.7285218199951946E-4 8.485470752703683E-4 0.0 0.10466985311807266 1.4142451254506137E-4 86-87 1.7285218199951946E-4 8.721178273612118E-4 0.0 0.1048034207132541 1.492814299086759E-4 88 1.7285218199951946E-4 9.742577530882007E-4 0.0 0.10481127763061772 1.5713834727229043E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7340 0.0 49.066284 1 GTATCAA 12770 0.0 35.401794 1 TCAACGC 14830 0.0 29.488928 4 ATCAACG 15150 0.0 28.893896 3 CAACGCA 15260 0.0 28.686518 5 AACGCAG 15805 0.0 27.64396 6 TATCAAC 16645 0.0 26.653442 2 ACGCAGA 18445 0.0 23.733244 7 GTACATG 17380 0.0 23.439522 1 CGCAGAG 18740 0.0 23.359642 8 TACATGG 17365 0.0 22.92549 2 ACATGGG 17510 0.0 22.253954 3 CATGGGG 12715 0.0 20.198648 4 GCAGAGT 22935 0.0 19.089073 9 GAGTACT 14330 0.0 18.89563 12-13 GTGGTAT 3825 0.0 18.74299 1 CAGAGTA 21915 0.0 17.995186 10-11 AGAGTAC 20210 0.0 17.415913 10-11 GAGTACA 12275 0.0 16.834335 1 ATGGGGG 7655 0.0 16.748018 5 >>END_MODULE