##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139887_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10984615 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.37496452993573 33.0 31.0 34.0 31.0 34.0 2 32.52809297367272 34.0 31.0 34.0 31.0 34.0 3 32.64684315290067 34.0 31.0 34.0 31.0 34.0 4 36.16224082500843 37.0 35.0 37.0 35.0 37.0 5 36.00669927894605 37.0 35.0 37.0 35.0 37.0 6 36.05005564601035 37.0 35.0 37.0 35.0 37.0 7 36.02655659756851 37.0 35.0 37.0 35.0 37.0 8 36.01437619798236 37.0 35.0 37.0 35.0 37.0 9 37.85299284499275 39.0 38.0 39.0 35.0 39.0 10-11 37.73114182882149 39.0 37.0 39.0 35.0 39.0 12-13 37.74961894431439 39.0 37.0 39.0 35.0 39.0 14-15 39.079504880234765 40.0 38.5 41.0 36.0 41.0 16-17 39.03163779522541 40.0 38.0 41.0 36.0 41.0 18-19 39.09306602916898 40.0 38.5 41.0 36.0 41.0 20-21 39.09069076327525 40.0 39.0 41.0 36.0 41.0 22-23 39.05589839772786 40.0 39.0 41.0 36.0 41.0 24-25 39.039778119167636 40.0 39.0 41.0 36.0 41.0 26-27 38.94426836067693 40.0 38.0 41.0 35.0 41.0 28-29 38.86608123366262 40.0 38.0 41.0 35.0 41.0 30-31 38.723133958568525 40.0 38.0 41.0 35.0 41.0 32-33 38.636024740198636 40.0 38.0 41.0 35.0 41.0 34-35 38.59078852807318 40.0 38.0 41.0 35.0 41.0 36-37 38.492272482178734 40.0 38.0 41.0 34.0 41.0 38-39 38.45657976181771 40.0 38.0 41.0 34.0 41.0 40-41 38.45713665781958 40.0 38.0 41.0 34.0 41.0 42-43 38.420260435421845 40.0 38.0 41.0 34.0 41.0 44-45 38.31493152226512 40.0 38.0 41.0 34.0 41.0 46-47 38.25961390394785 40.0 38.0 41.0 34.0 41.0 48-49 38.2358453274646 40.0 38.0 41.0 34.0 41.0 50-51 38.159138580059064 40.0 37.5 41.0 33.0 41.0 52-53 38.03036135851106 40.0 37.0 41.0 33.0 41.0 54-55 37.8566981293736 40.0 37.0 41.0 33.0 41.0 56-57 37.73483983293943 39.0 37.0 41.0 33.0 41.0 58-59 37.51576350843615 39.0 36.0 41.0 32.5 41.0 60-61 37.353062506870685 39.0 36.0 40.5 32.0 41.0 62-63 37.14208329775377 39.0 35.0 40.0 32.0 41.0 64-65 36.82457170060886 38.5 35.0 40.0 31.0 41.0 66-67 36.75314779137885 38.0 35.0 40.0 31.5 41.0 68-69 36.52086694801215 37.5 35.0 40.0 31.0 41.0 70-71 36.21038446173863 37.0 35.0 39.5 31.0 41.0 72-73 35.89968974600458 36.5 34.5 39.0 31.0 41.0 74-75 35.498740404367034 36.0 34.0 39.0 30.5 40.0 76-77 33.45414928566747 34.5 32.0 36.5 27.5 39.0 78-79 34.652523604751394 35.0 34.0 37.0 30.0 39.0 80-81 34.660736375661074 35.0 34.0 37.0 30.0 39.0 82-83 34.37583725222753 35.0 34.0 36.5 30.0 39.0 84-85 34.11795051819716 35.0 34.0 36.0 30.0 37.0 86-87 33.91004103670656 35.0 34.0 36.0 30.0 37.0 88-89 33.67369439618145 35.0 33.5 35.0 30.0 37.0 90-91 33.508590910714034 35.0 33.0 35.0 29.5 36.0 92-93 33.4420540267153 35.0 33.0 35.0 30.0 36.0 94-95 33.41463373945423 35.0 33.0 35.0 30.0 36.0 96-97 33.446480591901846 35.0 33.0 35.0 30.0 35.5 98-99 33.47188971973422 35.0 33.0 35.0 30.0 35.0 100-101 32.22297750954817 34.0 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 15.0 20 50.0 21 217.0 22 926.0 23 3168.0 24 8198.0 25 17886.0 26 33271.0 27 55095.0 28 81925.0 29 114183.0 30 153687.0 31 201323.0 32 264473.0 33 358557.0 34 520730.0 35 794486.0 36 1405203.0 37 2579929.0 38 3069151.0 39 1301427.0 40 20711.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.10280469547635 20.270869757383394 13.326083799932906 24.300241747207345 2 14.84180294146539 21.76302382795085 40.6207799862292 22.774393244354556 3 18.0796330574898 26.449389322824324 30.72759349012787 24.743384129558002 4 12.276127732140198 18.08694744975972 39.404705418816796 30.232219399283288 5 12.778798043699144 38.1624962709187 36.18477453316727 12.873931152214885 6 29.58320341677883 38.587715636824775 18.990005566876945 12.839075379519446 7 26.05512583327917 32.7087415179086 23.873619956058537 17.3625126927537 8 24.326821439570626 36.81235682753813 21.734165761836586 17.126655971054664 9 25.571430015009206 16.268552921087366 21.33856417594428 36.82145288795915 10-11 23.889260494742302 26.800684503292448 29.683937273134248 19.626117728831 12-13 24.70840390760271 24.393043834649582 29.608820504986692 21.289731752761014 14-15 21.798928109760073 25.819242525010093 26.99520561192253 25.386623753307298 16-17 21.576290433792444 28.924034476750187 27.639285936025487 21.860389153431882 18-19 21.52694017951471 28.280394897772933 29.181236666009685 21.01142825670267 20-21 22.25909361113057 27.52499254264779 29.005000989382268 21.210912856839368 22-23 21.976491450294215 27.4964927832551 28.822383690968678 21.704632075482007 24-25 21.748542042259192 27.59627402501979 28.949604696647523 21.705579236073493 26-27 21.758441427575605 27.751240702419196 28.84053783952188 21.649780030483317 28-29 21.669964429749896 27.828112989569647 28.862335563958517 21.63958701672194 30-31 21.947505657418727 27.76272288987598 28.705426591658224 21.58434486104707 32-33 21.78835025384547 27.852525198028594 28.667520947615245 21.6916036005107 34-35 21.878744827486663 27.87317173583202 28.693285651447198 21.554797785234125 36-37 21.845969518100876 27.820826207589946 28.653529573294634 21.679674701014545 38-39 21.681589894244258 27.939788898348183 28.723935969061277 21.654685238346282 40-41 21.909981464882158 27.81076104090907 28.612363315366917 21.666894178841854 42-43 21.79038381819382 27.944118199456252 28.432816662438498 21.832681319911433 44-45 21.90721123709252 28.017409026892192 28.272472293481503 21.802907442533787 46-47 21.96319593999334 27.98404136149715 28.0356094785892 22.017153219920306 48-49 21.892361838049318 28.074067304298865 28.062795301707727 21.97077555594409 50-51 21.88259248696653 28.15746453920837 28.022944712182547 21.93699826164255 52-53 22.05461679913119 28.037086326748405 27.907169391449845 22.00112748267056 54-55 21.966483989994153 27.9601988841222 27.955112864345633 22.118204261538015 56-57 22.008985270960444 28.115513886830335 27.866720289094353 22.008780553114864 58-59 22.012601155710136 28.19532412811624 27.80243654107287 21.989638175100755 60-61 22.068232640444847 28.13861829351163 27.83402915999964 21.959119906043878 62-63 22.02470108586029 28.191082615490043 27.819465290262222 21.964751008387445 64-65 22.01044579448827 28.14057234693487 27.788624674229002 22.060357184347854 66-67 22.059217620231923 28.206053935248903 27.670812055261646 22.06391638925753 68-69 22.040147867785116 28.173808672627505 27.709931614034634 22.07611184555274 70-71 22.011572630391147 27.932182276751693 27.800098319640615 22.256146773216546 72-73 22.0936398240806 27.98315092710056 27.765095873952177 22.158113374866662 74-75 21.938457662562453 28.08199622648017 27.7652236149114 22.214322496045984 76-77 22.072820186352573 28.01489909160118 27.687958562819563 22.224322159226684 78-79 22.046332455798513 28.02870359742403 27.67339486330712 22.251569083470336 80-81 22.067984276133622 28.016314372771124 27.671747358315596 22.243953992779662 82-83 22.08279177535234 27.978905313662167 27.78782178576363 22.150481125221862 84-85 22.202657012487755 27.941709193512892 27.699817237324385 22.155816556674967 86-87 22.0193794145848 27.932784208428256 27.81627264177251 22.23156373521443 88-89 22.160988907418812 27.910145585767648 27.718385722491696 22.21047978432185 90-91 22.195846216904616 27.88591890254914 27.75761252752823 22.160622353018013 92-93 22.180176426710357 27.78786701989384 27.85231344048995 22.17964311290585 94-95 22.087036474986405 27.76681576693815 27.91711911865124 22.229028639424207 96-97 22.087014195805878 27.823546898418883 27.921053293577902 22.16838561219734 98-99 22.325135439575174 28.410141241103616 27.96940152505385 21.295321794267355 100-101 26.339165363608853 35.32280228411121 28.711627978225124 9.626404374054811 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1534.0 1 1461.0 2 2470.5 3 3834.5 4 5282.5 5 8721.0 6 11699.5 7 13684.5 8 15125.5 9 15023.5 10 13678.0 11 12171.0 12 12892.5 13 16811.0 14 25802.5 15 38198.5 16 48232.5 17 53959.5 18 55795.5 19 54519.5 20 52066.5 21 50418.0 22 51779.5 23 58957.0 24 71710.0 25 90058.5 26 113441.5 27 138650.0 28 164626.5 29 191214.0 30 214900.0 31 236932.0 32 261487.5 33 284838.0 34 306426.5 35 327221.0 36 350665.5 37 372657.5 38 390056.0 39 405075.5 40 419832.0 41 434645.0 42 444416.5 43 451357.0 44 459296.0 45 467099.5 46 471071.0 47 471773.5 48 468225.5 49 458935.5 50 447557.5 51 432791.5 52 412267.5 53 390385.0 54 367299.5 55 340443.0 56 312475.0 57 283342.5 58 251961.0 59 219157.5 60 185294.5 61 152132.5 62 121579.5 63 95264.5 64 72715.5 65 55205.0 66 42392.0 67 33027.0 68 25595.5 69 18587.5 70 13276.5 71 9719.5 72 6959.0 73 4807.0 74 3257.0 75 2251.0 76 1593.0 77 1066.0 78 719.5 79 504.5 80 355.0 81 243.5 82 164.0 83 119.5 84 97.5 85 74.0 86 60.0 87 51.5 88 35.0 89 20.0 90 13.0 91 9.5 92 7.5 93 4.0 94 2.5 95 2.5 96 1.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004533613604118124 3 5.462185065202558E-5 4 2.731092532601279E-5 5 5.462185065202558E-5 6 0.0 7 9.103641775337598E-6 8 4.3697480521620466E-4 9 2.1848740260810233E-4 10-11 6.827731331503197E-5 12-13 2.594537905971215E-4 14-15 1.3655462663006396E-5 16-17 4.8249301409289267E-4 18-19 0.0 20-21 4.55202124992768E-5 22-23 0.0 24-25 0.0 26-27 1.1844183030164765E-4 28-29 4.559119262046367E-6 30-31 8.67701505749824E-5 32-33 4.625718039677486E-4 34-35 0.0 36-37 3.4197905683285246E-4 38-39 0.0011782582204584468 40-41 0.0 42-43 0.0 44-45 2.9211298298068353E-4 46-47 0.0 48-49 4.90300219159295E-6 50-51 8.427311071087443E-5 52-53 5.55925198511623E-4 54-55 0.003294417707874721 56-57 0.003592669112615847 58-59 0.004443248070268363 60-61 0.0010009280856752517 62-63 0.0 64-65 6.057951543893076E-4 66-67 0.0 68-69 0.0 70-71 1.6703979645198563E-5 72-73 2.4250839403327837E-4 74-75 3.997129147642474E-5 76-77 0.0 78-79 0.0 80-81 5.227795857898528E-4 82-83 0.0 84-85 0.0 86-87 2.4771242222681454E-5 88-89 0.0 90-91 0.001348355418564349 92-93 1.8861062390313166E-4 94-95 6.622459541739045E-6 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 307.0 20-21 886.0 22-23 1788.0 24-25 4408.0 26-27 7111.0 28-29 14762.0 30-31 29677.0 32-33 37239.0 34-35 50602.0 36-37 78327.0 38-39 92679.0 40-41 92213.0 42-43 103802.0 44-45 122305.0 46-47 121585.0 48-49 113977.0 50-51 104455.0 52-53 101296.0 54-55 108919.0 56-57 114646.0 58-59 114205.0 60-61 111070.0 62-63 105378.0 64-65 108657.0 66-67 117169.0 68-69 117901.0 70-71 116132.0 72-73 109542.0 74-75 110934.0 76-77 110085.0 78-79 116181.0 80-81 119477.0 82-83 112862.0 84-85 111730.0 86-87 116532.0 88-89 125515.0 90-91 139726.0 92-93 133989.0 94-95 148125.0 96-97 220774.0 98-99 894877.0 100-101 6322770.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.18103565753626 #Duplication Level Percentage of deduplicated Percentage of total 1 89.3328022696407 75.20127813248259 2 7.270089497863068 12.240073265061815 3 1.8686298888100188 4.719095979019626 4 0.6943415116901208 2.3380155021637474 5 0.31403781769060707 1.3218014364413933 6 0.17443472401063767 0.8810457433111192 7 0.10037661800300392 0.5914865361505638 8 0.0673441157007583 0.4535277924104624 9 0.04234553614267897 0.32082219791679134 >10 0.13294874213359434 1.6952694195415965 >50 0.002214982019568658 0.12436143600238027 >100 3.44050372571689E-4 0.051217694664126574 >500 5.415094257021525E-5 0.026165606585262482 >1k 3.6094980034483224E-5 0.03583925824854105 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.103641775337598E-6 2 0.0 9.103641775337598E-6 0.0 1.8207283550675195E-5 9.103641775337598E-6 3 0.0 9.103641775337598E-6 0.0 1.8207283550675195E-5 9.103641775337598E-6 4 9.103641775337598E-6 2.731092532601279E-5 0.0 2.731092532601279E-5 9.103641775337598E-6 5 2.731092532601279E-5 3.641456710135039E-5 0.0 2.731092532601279E-5 9.103641775337598E-6 6 5.462185065202558E-5 3.641456710135039E-5 0.0 2.731092532601279E-5 1.8207283550675195E-5 7 7.282913420270078E-5 3.641456710135039E-5 0.0 2.731092532601279E-5 1.8207283550675195E-5 8 7.282913420270078E-5 3.641456710135039E-5 0.0 2.731092532601279E-5 1.8207283550675195E-5 9 1.0924370130405117E-4 6.372549242736319E-5 0.0 4.551820887668799E-5 1.8207283550675195E-5 10-11 1.4110644751773278E-4 6.372549242736319E-5 0.0 7.282913420270078E-5 1.8207283550675195E-5 12-13 1.7296919373141435E-4 6.372549242736319E-5 0.0 8.193277597803838E-5 2.731092532601279E-5 14-15 1.9117647728208954E-4 1.0014005952871357E-4 0.0 9.103641775337597E-5 6.827731331503198E-5 16-17 2.2303922349577112E-4 1.2289916396705756E-4 0.0 1.0924370130405117E-4 7.282913420270078E-5 18-19 2.4124650704644633E-4 1.4110644751773278E-4 0.0 2.0028011905742714E-4 9.103641775337597E-5 20-21 2.640056114847903E-4 1.5476191018073916E-4 0.0 3.004201785861407E-4 9.103641775337597E-5 22-23 2.685574323724591E-4 1.5476191018073916E-4 0.0 4.870448349805614E-4 1.0469188041638237E-4 24-25 2.867647159231343E-4 1.8207283550675195E-4 0.0 7.556022673530205E-4 1.1834734307938876E-4 26-27 2.913165368108031E-4 2.0028011905742714E-4 0.0 0.0013746499080759772 1.1834734307938876E-4 28-29 3.004201785861407E-4 2.0483193994509592E-4 0.0 0.003946428709608848 1.1834734307938876E-4 30-31 3.186274621368159E-4 2.3214286527110874E-4 0.0 0.008612045119469367 1.1834734307938876E-4 32-33 3.186274621368159E-4 2.5035014882178393E-4 0.0 0.015976891315717483 1.2745098485472637E-4 34-35 3.459383874628287E-4 3.231792830244847E-4 0.0 0.02580882443308209 1.4565826840540156E-4 36-37 3.5504202923816627E-4 4.005602381148543E-4 0.0 0.04352451132788905 1.5476191018073916E-4 38-39 3.641456710135039E-4 4.415266261038735E-4 0.0 0.06588760734900587 1.7752101461908316E-4 40-41 3.914565963395167E-4 5.098039394189054E-4 0.0 0.08103151544227996 1.8207283550675195E-4 42-43 4.0966387989019185E-4 5.462185065202559E-4 0.0 0.0927387987653641 1.9572829816975835E-4 44-45 4.0966387989019185E-4 5.780812527339373E-4 0.0 0.10548844907172442 2.0938376083276473E-4 46-47 4.0966387989019185E-4 6.008403571722814E-4 0.0 0.12050945800103144 2.2303922349577112E-4 48-49 4.1876752166552947E-4 6.053921780599502E-4 0.0 0.1320847385183732 2.3669468615877752E-4 50-51 4.3697480521620466E-4 6.372549242736318E-4 0.0 0.14250840835113476 2.3669468615877752E-4 52-53 4.5518208876687985E-4 6.372549242736318E-4 0.0 0.15272269442306352 2.457983279341151E-4 54-55 4.5518208876687985E-4 6.418067451613006E-4 0.0 0.16260924939108018 2.5490196970945274E-4 56-57 4.642857305422175E-4 6.55462207824307E-4 0.0 0.1722500060311627 2.594537905971215E-4 58-59 4.8249301409289267E-4 6.645658495996445E-4 0.0 0.1811032976576785 2.640056114847903E-4 60-61 4.915966558682302E-4 6.873249540379886E-4 0.0 0.18976996462779988 2.822128950354655E-4 62-63 5.007002976435679E-4 7.100840584763325E-4 0.0 0.1980542786433571 2.822128950354655E-4 64-65 5.007002976435679E-4 7.373949838023454E-4 0.0 0.20600175791322684 2.822128950354655E-4 66-67 5.007002976435679E-4 7.464986255776829E-4 0.0 0.21428607192878402 3.004201785861407E-4 68-69 5.007002976435679E-4 7.556022673530205E-4 0.0 0.22289356522736573 3.186274621368159E-4 70-71 5.143557603065742E-4 7.556022673530205E-4 0.0 0.2301673750058605 3.277311039121535E-4 72-73 5.507703274079247E-4 7.601540882406894E-4 0.0 0.23573880377236708 3.823529545641791E-4 74-75 5.553221482955934E-4 7.783613717913646E-4 0.0 0.240522767525307 3.823529545641791E-4 76-77 5.64425790070931E-4 8.056722971173774E-4 0.0 0.24447374805580352 3.823529545641791E-4 78-79 5.735294318462686E-4 8.102241180050462E-4 0.0 0.24791492464688114 3.823529545641791E-4 80-81 5.735294318462686E-4 8.193277597803837E-4 0.0 0.24949440649490218 3.914565963395167E-4 82-83 5.826330736216061E-4 8.193277597803837E-4 0.0 0.2500588322849731 4.460784469915423E-4 84-85 5.962885362846126E-4 8.238795806680525E-4 0.0 0.25061415443326873 4.460784469915423E-4 86-87 6.008403571722814E-4 8.284314015557213E-4 0.0 0.2509691964625069 4.460784469915423E-4 88-89 6.190476407229566E-4 8.648459686570717E-4 0.0 0.2511148547309123 4.460784469915423E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12245 0.0 42.79361 1 GTATCAA 20470 0.0 31.835987 1 TCAACGC 23085 0.0 27.382616 4 ATCAACG 23225 0.0 27.271273 3 CAACGCA 23605 0.0 26.726425 5 AACGCAG 24230 0.0 26.106157 6 TATCAAC 25465 0.0 25.3629 2 GTACATG 27685 0.0 22.352472 1 ACGCAGA 28380 0.0 22.259354 7 TACATGG 27730 0.0 22.01645 2 CGCAGAG 28715 0.0 21.95622 8 ACATGGG 27830 0.0 21.339108 3 CATGGGG 21260 0.0 19.54175 4 GCAGAGT 35440 0.0 17.813173 9 GAGTACT 20780 0.0 17.601416 12-13 AGAGTAC 30645 0.0 17.078663 10-11 CAGAGTA 33875 0.0 16.70856 10-11 ATGGGGG 14255 0.0 16.1039 5 GTACTTT 23825 0.0 15.430766 14-15 AGTACTT 23535 0.0 14.781177 12-13 >>END_MODULE