##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139886_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17274472 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02894178183854 33.0 31.0 34.0 30.0 34.0 2 32.21248215285538 33.0 31.0 34.0 30.0 34.0 3 32.32330151682784 34.0 31.0 34.0 30.0 34.0 4 35.93807087128336 37.0 35.0 37.0 35.0 37.0 5 35.71343031497576 37.0 35.0 37.0 33.0 37.0 6 35.74467341172569 37.0 35.0 37.0 33.0 37.0 7 35.71403183842609 37.0 35.0 37.0 33.0 37.0 8 35.68804065328307 37.0 35.0 37.0 33.0 37.0 9 37.48028541769612 39.0 37.0 39.0 35.0 39.0 10-11 37.32078326330321 39.0 37.0 39.0 34.0 39.0 12-13 37.33939228359628 39.0 37.0 39.0 34.0 39.0 14-15 38.55326307513191 40.0 38.0 41.0 34.5 41.0 16-17 38.482402530161266 40.0 38.0 41.0 34.0 41.0 18-19 38.54331596936798 40.0 38.0 41.0 34.0 41.0 20-21 38.54073205119038 40.0 38.0 41.0 34.0 41.0 22-23 38.49770463943146 40.0 38.0 41.0 34.0 41.0 24-25 38.47431409741645 40.0 38.0 41.0 34.0 41.0 26-27 38.35586133661345 40.0 38.0 41.0 34.0 41.0 28-29 38.262444353446256 40.0 38.0 41.0 34.0 41.0 30-31 38.10832401788032 40.0 38.0 41.0 34.0 41.0 32-33 38.0059257389516 40.0 37.0 41.0 33.5 41.0 34-35 37.94633565455338 40.0 37.0 41.0 33.0 41.0 36-37 37.840385265676986 40.0 37.0 41.0 33.0 41.0 38-39 37.79579280307746 40.0 37.0 41.0 33.0 41.0 40-41 37.787451466918284 40.0 37.0 41.0 33.0 41.0 42-43 37.74326653817949 40.0 37.0 41.0 33.0 41.0 44-45 37.62622587571676 39.0 37.0 41.0 33.0 41.0 46-47 37.561974708489394 39.0 37.0 41.0 33.0 41.0 48-49 37.53353794957961 39.0 37.0 40.0 32.0 41.0 50-51 37.438066795546966 39.0 36.0 40.0 32.0 41.0 52-53 37.28486482903563 39.0 36.0 40.0 31.5 41.0 54-55 37.09144365156226 39.0 36.0 40.0 31.0 41.0 56-57 36.95184871366736 39.0 35.0 40.0 31.0 41.0 58-59 36.71756866338163 38.5 35.0 40.0 31.0 41.0 60-61 36.53972806475363 38.0 35.0 40.0 31.0 41.0 62-63 36.320642774733244 38.0 35.0 40.0 30.0 41.0 64-65 36.01034725734468 38.0 34.0 40.0 30.0 41.0 66-67 35.95629938738783 37.0 34.0 40.0 30.0 41.0 68-69 35.73459800553092 37.0 34.0 39.0 30.0 41.0 70-71 35.436973489331706 36.0 34.0 39.0 30.0 40.5 72-73 35.13242808528777 36.0 34.0 39.0 29.0 40.0 74-75 34.73837845867578 35.5 33.5 38.5 29.0 40.0 76-77 32.672150329711215 33.5 31.0 36.0 26.5 38.5 78-79 33.93519294053348 35.0 33.0 37.0 29.0 39.0 80-81 33.998480308344625 35.0 33.0 36.5 29.0 39.0 82-83 33.721691047548575 35.0 33.0 36.0 29.0 38.5 84-85 33.46716875823027 35.0 33.0 36.0 29.0 37.0 86-87 33.264346664006865 35.0 33.0 35.0 29.0 37.0 88-89 33.03816091243098 34.5 32.5 35.0 29.0 36.5 90-91 32.895989486787755 34.0 32.0 35.0 28.5 36.0 92-93 32.84114780987535 34.0 32.0 35.0 29.0 36.0 94-95 32.83385852582178 34.0 32.0 35.0 29.0 35.5 96-97 32.90364315581091 34.0 32.0 35.0 29.0 35.0 98-99 32.97479371593601 34.0 32.0 35.0 29.0 35.0 100-101 31.75831541875626 33.0 30.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 3.0 18 9.0 19 32.0 20 117.0 21 706.0 22 2539.0 23 8087.0 24 21181.0 25 44417.0 26 80022.0 27 128263.0 28 187357.0 29 257743.0 30 340061.0 31 441645.0 32 578612.0 33 782261.0 34 1118161.0 35 1676219.0 36 2726509.0 37 4044389.0 38 3661756.0 39 1164103.0 40 10279.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.497575150198514 20.816265759092374 13.650263811247024 24.03589527946209 2 14.99209475617572 22.108238305515865 40.35949567375249 22.540171264555926 3 18.0441835995606 26.78429269932775 31.0280423172609 24.14348138385075 4 12.425245849956864 18.425844768857885 39.22640355915053 29.92250582203472 5 12.685853834405957 38.34698296247952 36.20002174307946 12.76714146003505 6 29.453299643543374 38.86789709115277 18.85634478437315 12.822458480930704 7 25.792099646715606 32.94412308384837 23.93517415413314 17.328603115302883 8 24.325334410842398 36.861038958783546 21.748343358760156 17.065283271613907 9 25.52696009333549 16.186713354479775 21.32725669308988 36.95906985909485 10-11 23.830447894321246 26.84281606281827 29.702047799973897 19.62468824288659 12-13 24.664144655121497 24.443755436681776 29.59695043054511 21.295149477651616 14-15 21.75329509423966 25.906169729800073 26.972144670388694 25.368390505571575 16-17 21.501651677680023 29.009429586448 27.611983520937954 21.876935214934022 18-19 21.487381581757266 28.27849836906728 29.151677061485703 21.082442987689753 20-21 22.21660770409531 27.53581896609117 29.017574146084762 21.22999918372876 22-23 21.910624494552515 27.54444464001023 28.876119279585062 21.668811585852197 24-25 21.67298216800474 27.659660472972732 29.013682918640427 21.653674440382105 26-27 21.67810672820922 27.807708243393957 28.910375236316714 21.603809792080106 28-29 21.582885974447116 27.85559527902983 28.843359178116252 21.7181595684068 30-31 21.870495890728296 27.68123047947164 28.826296435960476 21.62197719383959 32-33 21.622732176484188 27.888227355063393 28.796771367715913 21.692269100736503 34-35 21.723568691251145 27.977340927052403 28.821988789451876 21.477101592244576 36-37 21.81357119952333 27.841239581063164 28.675508866782167 21.669680352631342 38-39 21.68315819883978 27.937947604233855 28.75792602898148 21.62096816794489 40-41 21.884013084816 27.815368173767475 28.67730583718357 21.623312904232957 42-43 21.837769738720905 27.8940769972987 28.51106683481272 21.757086429167675 44-45 21.851653354246782 28.055554746462057 28.290424475531434 21.802367423759726 46-47 21.990668308861665 27.91934022769238 28.02308057873043 22.066910884715522 48-49 21.896252520915933 28.044887452635912 28.095607510217313 21.96325251623084 50-51 21.840072206297794 28.175613567747725 28.023484292512013 21.960829933442465 52-53 22.022905134434705 28.075274608663875 27.907645405739895 21.994174851161524 54-55 21.93076059268058 28.02985778824261 27.903539327117727 22.135842291959086 56-57 22.018755099083954 28.121293548458482 27.81683533183235 22.043116020625213 58-59 21.93339551344252 28.235461501789434 27.863566484355008 21.967576500413045 60-61 22.016086772356708 28.203480753561934 27.833734114940068 21.94669835914129 62-63 21.95709869546814 28.25661209552257 27.77302790610901 22.013261302900275 64-65 21.876508864992534 28.186390497414592 27.796271355159803 22.14082928243307 66-67 21.96492786189065 28.26663295070514 27.622174960484823 22.146264226919385 68-69 21.94222637110917 28.28314074507864 27.6676845731297 22.10694831068249 70-71 21.97042915004836 28.01378903043878 27.698930468484935 22.316851351027932 72-73 22.01229094514729 27.996394037857254 27.714765184453345 22.276549832542113 74-75 21.886970985522034 28.070473540946416 27.714805040568635 22.327750432962915 76-77 22.05754326128293 28.001848920690716 27.594200000256386 22.34640781776997 78-79 22.022088172470102 28.047146444088188 27.534682189626476 22.39608319381523 80-81 22.05966141548844 28.009728005825107 27.532542466973815 22.398068111712636 82-83 22.066353611408882 27.984242915950798 27.64211310616406 22.307290366476256 84-85 22.22230630197681 27.916662009941795 27.58212289531558 22.278908792765808 86-87 22.010861085588477 27.96071948092474 27.696166193600448 22.332253239886338 88-89 22.11173534673755 27.894917416814824 27.680478941299796 22.312868295147833 90-91 22.124698864021397 27.85600974781176 27.753528965457335 22.265762422709503 92-93 22.10347636430455 27.761011105644435 27.829451861448746 22.30606066860227 94-95 21.983257033975267 27.785791651166402 27.891191338266125 22.339759976592205 96-97 21.916477628281942 27.83635210318905 27.95778705848714 22.28938321004187 98-99 22.131029875335184 28.493811309851413 27.96342483388841 21.41173398092499 100-101 26.232388763866375 35.45908032288271 28.614397985769713 9.694132927481201 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2507.0 1 2384.0 2 4006.5 3 6179.5 4 8558.5 5 14335.5 6 19420.5 7 22876.0 8 25109.0 9 24567.5 10 22039.0 11 19345.5 12 20526.5 13 27305.0 14 43171.0 15 64513.5 16 81369.5 17 91108.0 18 94664.5 19 93314.5 20 90068.5 21 87945.0 22 89427.0 23 99011.5 24 119378.5 25 149778.0 26 187771.5 27 227822.5 28 268617.0 29 310020.0 30 344719.5 31 376656.5 32 412245.5 33 447262.0 34 481099.5 35 513825.0 36 549628.0 37 581283.0 38 604048.5 39 623857.0 40 645262.5 41 665642.5 42 677619.0 43 690468.0 44 705776.5 45 716353.5 46 724918.0 47 732170.5 48 728683.0 49 717879.0 50 705159.5 51 683505.0 52 651271.0 53 616587.5 54 580566.5 55 536295.5 56 490892.5 57 442064.5 58 388136.5 59 336405.0 60 282548.5 61 230244.0 62 184060.5 63 143814.0 64 109354.0 65 81902.5 66 62457.0 67 48308.5 68 36958.5 69 27215.5 70 19880.5 71 14723.5 72 10558.0 73 7247.0 74 5096.0 75 3552.5 76 2407.0 77 1641.5 78 1128.0 79 760.5 80 547.0 81 408.0 82 309.5 83 225.0 84 161.5 85 112.0 86 76.0 87 56.0 88 38.5 89 29.5 90 24.0 91 17.5 92 13.0 93 9.5 94 4.0 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0028655000280182223 3 4.631111156393087E-5 4 7.525555629138767E-5 5 5.788888945491358E-5 6 0.0 7 2.3155555781965434E-5 8 3.589111146204642E-4 9 8.104444523687901E-5 10-11 3.762777814569383E-5 12-13 1.9392777967396053E-4 14-15 2.3155555781965434E-5 16-17 3.849611148751753E-4 18-19 5.7888889454913585E-6 20-21 5.789154366643355E-5 22-23 0.0 24-25 0.0 26-27 7.531655039191402E-5 28-29 5.79702533181231E-6 30-31 4.6447187834691903E-5 32-33 3.9003396846581186E-4 34-35 0.0 36-37 3.199325241760387E-4 38-39 9.754971954012224E-4 40-41 0.0 42-43 0.0 44-45 2.6396605724185874E-4 46-47 0.0 48-49 6.205426614547288E-6 50-51 8.152519594188896E-5 52-53 5.3825455888155E-4 54-55 0.002848053834674343 56-57 0.003107608838104143 58-59 0.003997692834788812 60-61 7.731423817027728E-4 62-63 6.686820297254573E-6 64-65 4.5330230219722725E-4 66-67 0.0 68-69 0.0 70-71 0.0 72-73 9.630156685859332E-5 74-75 1.0841236986585668E-5 76-77 0.0 78-79 0.0 80-81 3.8426047978160744E-4 82-83 0.0 84-85 0.0 86-87 3.94002944226401E-6 88-89 0.0 90-91 8.526733103380804E-4 92-93 1.2899201685051843E-4 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 497.0 20-21 1539.0 22-23 3118.0 24-25 6721.0 26-27 9346.0 28-29 19087.0 30-31 43879.0 32-33 54509.0 34-35 74670.0 36-37 112590.0 38-39 130362.0 40-41 137543.0 42-43 157011.0 44-45 182585.0 46-47 182393.0 48-49 172205.0 50-51 158547.0 52-53 146158.0 54-55 160882.0 56-57 169404.0 58-59 171819.0 60-61 182930.0 62-63 172156.0 64-65 183155.0 66-67 195393.0 68-69 191870.0 70-71 190112.0 72-73 182252.0 74-75 186703.0 76-77 180287.0 78-79 193103.0 80-81 198498.0 82-83 190834.0 84-85 192735.0 86-87 202426.0 88-89 219161.0 90-91 243211.0 92-93 243671.0 94-95 281550.0 96-97 412512.0 98-99 1459708.0 100-101 9677340.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.43314828558564 #Duplication Level Percentage of deduplicated Percentage of total 1 87.96043668644054 71.62895283951781 2 7.800777099875993 12.70483676634005 3 2.218391798078594 5.4195188474538325 4 0.8905797800295817 2.900908611491727 5 0.43123853197064327 1.755855566021183 6 0.2222402731150499 1.0858635069364146 7 0.14203579117775644 0.8096495151387101 8 0.08521049540478122 0.5551167126228611 9 0.057472728968198925 0.4212166734400155 >10 0.1873045396335598 2.3228895349008747 >50 0.003292431663050728 0.18216833271268695 >100 9.254335852505642E-4 0.12183386382807486 >500 4.046574418598559E-5 0.02629583368004612 >1k 5.394431282322851E-5 0.06489339591576623 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 5.7888889454913585E-6 0.0 5.7888889454913585E-6 0.0 4 0.0 7.525555629138767E-5 0.0 2.3155555781965434E-5 0.0 5 0.0 8.104444523687901E-5 0.0 3.473333367294815E-5 0.0 6 0.0 8.104444523687901E-5 0.0 3.473333367294815E-5 0.0 7 0.0 8.104444523687901E-5 0.0 4.052222261843951E-5 0.0 8 0.0 8.683333418237038E-5 0.0 4.052222261843951E-5 0.0 9 0.0 1.968222241467062E-4 0.0 4.052222261843951E-5 0.0 10-11 0.0 1.968222241467062E-4 0.0 4.631111156393087E-5 0.0 12-13 0.0 1.968222241467062E-4 0.0 4.920555603667655E-5 0.0 14-15 0.0 2.633944470198568E-4 0.0 5.210000050942223E-5 0.0 16-17 0.0 2.662888914926025E-4 0.0 6.367777840040494E-5 0.0 18-19 0.0 2.8944444727456794E-4 0.0 1.244611123280642E-4 0.0 20-21 0.0 3.3286111436575314E-4 0.0 3.06811114111042E-4 0.0 22-23 0.0 3.647000035659556E-4 0.0 7.322944516046569E-4 0.0 24-25 0.0 3.9364444829341233E-4 0.0 0.0017453500170656446 0.0 26-27 0.0 3.994333372389037E-4 0.0 0.00411300559577161 0.0 28-29 0.0 4.052222261843951E-4 0.0 0.025285866913906253 0.0 30-31 0.0 4.920555603667655E-4 0.0 0.03868714482271875 0.0 32-33 5.7888889454913585E-6 4.920555603667655E-4 0.0 0.0453559448879248 0.0 34-35 5.7888889454913585E-6 5.731000056036445E-4 0.0 0.05414058386270793 0.0 36-37 5.7888889454913585E-6 6.541444508405235E-4 0.0 0.06700060065511698 0.0 38-39 5.7888889454913585E-6 6.715111176769976E-4 0.0 0.09116342311359792 0.0 40-41 5.7888889454913585E-6 7.699222297503507E-4 0.0 0.13895070135862908 0.0 42-43 5.7888889454913585E-6 8.046555634232988E-4 0.0 0.1589686793321382 0.0 44-45 5.7888889454913585E-6 9.291166757513631E-4 0.0 0.18793917405984972 0.0 46-47 5.7888889454913585E-6 0.0010188444544064791 0.0 0.2225046299533786 0.0 48-49 5.7888889454913585E-6 0.0010275277878247161 0.0 0.2502710357804279 0.0 50-51 5.7888889454913585E-6 0.0011751444559347458 0.0 0.27816769160875077 0.0 52-53 5.7888889454913585E-6 0.0011751444559347458 0.0 0.31530920308302335 0.0 54-55 5.7888889454913585E-6 0.0011809333448802371 0.0 0.38706248156238876 0.0 56-57 5.7888889454913585E-6 0.0012040889006622027 0.0 0.4662081712251466 0.0 58-59 5.7888889454913585E-6 0.0012156666785531852 0.0 0.5499183998214243 0.0 60-61 5.7888889454913585E-6 0.0012330333453896593 0.0 0.6001977947574895 0.0 62-63 5.7888889454913585E-6 0.001244611123280642 0.0 0.6231970505379267 0.0 64-65 5.7888889454913585E-6 0.0014038055692816545 0.0 0.6447693451933003 0.0 66-67 5.7888889454913585E-6 0.0014067000137544 0.0 0.6536639730580478 0.0 68-69 5.7888889454913585E-6 0.0014182777916453828 0.0 0.6617221064701717 0.0 70-71 5.7888889454913585E-6 0.0014240666805908741 0.0 0.6692766065440379 0.0 72-73 5.7888889454913585E-6 0.0014240666805908741 0.0 0.674715267708327 0.0 74-75 5.7888889454913585E-6 0.0014472222363728397 0.0 0.6792595455305378 0.0 76-77 5.7888889454913585E-6 0.0014906389034640248 0.0 0.6831988844579446 0.0 78-79 5.7888889454913585E-6 0.0015166889037187359 0.0 0.6866635344918213 0.0 80-81 5.7888889454913585E-6 0.0015195833481914816 0.0 0.6883220511747045 0.0 82-83 5.7888889454913585E-6 0.0015369500150279557 0.0 0.6890109289592179 0.0 84-85 5.7888889454913585E-6 0.001560105570809921 0.0 0.6896650734100584 0.0 86-87 5.7888889454913585E-6 0.0015832611265918866 0.0 0.6898676845231506 0.0 88-89 5.7888889454913585E-6 0.0016816722386652396 0.0 0.6899545178573331 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17850 0.0 46.68038 1 GTATCAA 31995 0.0 34.065193 1 TCAACGC 37700 0.0 28.19251 4 ATCAACG 38055 0.0 27.896719 3 CAACGCA 38765 0.0 27.353584 5 AACGCAG 39855 0.0 26.762125 6 TATCAAC 40830 0.0 26.36804 2 ACGCAGA 46450 0.0 22.854954 7 CGCAGAG 47100 0.0 22.513117 8 GTACATG 43935 0.0 21.332525 1 TACATGG 43825 0.0 20.949488 2 ACATGGG 43615 0.0 20.57304 3 CATGGGG 32715 0.0 18.501215 4 GCAGAGT 57170 0.0 18.460255 9 AGAGTAC 51165 0.0 17.5252 10-11 GAGTACT 35480 0.0 17.493483 12-13 CAGAGTA 55895 0.0 16.775246 10-11 AGTACTT 38965 0.0 15.806103 12-13 GTGGTAT 10475 0.0 15.329394 1 GTACTTT 40900 0.0 15.246938 14-15 >>END_MODULE