##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139885_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12131799 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.191059215537614 33.0 31.0 34.0 30.0 34.0 2 32.36696272333559 34.0 31.0 34.0 30.0 34.0 3 32.479917281847484 34.0 31.0 34.0 31.0 34.0 4 36.04459280935993 37.0 35.0 37.0 35.0 37.0 5 35.85961142284009 37.0 35.0 37.0 35.0 37.0 6 35.89531412447569 37.0 35.0 37.0 35.0 37.0 7 35.86707305322154 37.0 35.0 37.0 35.0 37.0 8 35.84579756060911 37.0 35.0 37.0 35.0 37.0 9 37.65514215987258 39.0 37.0 39.0 35.0 39.0 10-11 37.51321972116419 39.0 37.0 39.0 35.0 39.0 12-13 37.53100496472122 39.0 37.0 39.0 35.0 39.0 14-15 38.80008678020465 40.0 38.0 41.0 35.5 41.0 16-17 38.74034448641953 40.0 38.0 41.0 35.0 41.0 18-19 38.799801043522066 40.0 38.0 41.0 35.0 41.0 20-21 38.79556129053121 40.0 38.0 41.0 35.0 41.0 22-23 38.75535677548919 40.0 38.0 41.0 35.0 41.0 24-25 38.73633486921972 40.0 38.0 41.0 35.0 41.0 26-27 38.630239476372296 40.0 38.0 41.0 34.5 41.0 28-29 38.54390545047429 40.0 38.0 41.0 34.0 41.0 30-31 38.39622094904027 40.0 38.0 41.0 34.0 41.0 32-33 38.305051304636606 40.0 38.0 41.0 34.0 41.0 34-35 38.25380939168126 40.0 38.0 41.0 34.0 41.0 36-37 38.15311089112038 40.0 38.0 41.0 34.0 41.0 38-39 38.11465943188742 40.0 38.0 41.0 33.5 41.0 40-41 38.10904705220423 40.0 38.0 41.0 33.0 41.0 42-43 38.06882187363777 40.0 37.5 41.0 33.0 41.0 44-45 37.95913217867201 40.0 37.0 41.0 33.0 41.0 46-47 37.897178939420996 40.0 37.0 41.0 33.0 41.0 48-49 37.87040874057905 40.0 37.0 41.0 33.0 41.0 50-51 37.78533846180774 40.0 37.0 41.0 33.0 41.0 52-53 37.64062410450721 39.0 37.0 41.0 33.0 41.0 54-55 37.45486764045562 39.0 36.0 40.0 32.0 41.0 56-57 37.324429310857376 39.0 36.0 40.0 32.0 41.0 58-59 37.09835510348277 39.0 35.5 40.0 31.5 41.0 60-61 36.9236064589705 39.0 35.0 40.0 31.0 41.0 62-63 36.7065409735806 38.0 35.0 40.0 31.0 41.0 64-65 36.38269978712395 38.0 35.0 40.0 31.0 41.0 66-67 36.3159576957364 37.5 35.0 40.0 31.0 41.0 68-69 36.086062429479426 37.0 34.5 40.0 31.0 41.0 70-71 35.777934423149546 36.5 34.0 39.0 30.0 41.0 72-73 35.46597272869403 36.0 34.0 39.0 30.0 40.0 74-75 35.064350898470934 35.5 34.0 38.5 30.0 40.0 76-77 33.000143473061826 34.0 31.0 36.0 27.0 39.0 78-79 34.240924067121256 35.0 33.0 37.0 29.0 39.0 80-81 34.27813498246255 35.0 34.0 37.0 30.0 39.0 82-83 33.99960359179525 35.0 33.0 36.0 29.0 38.5 84-85 33.74749380795929 35.0 33.0 36.0 29.0 37.0 86-87 33.54377489272724 35.0 33.0 35.5 29.0 37.0 88-89 33.31315089721837 35.0 33.0 35.0 29.0 36.5 90-91 33.157813494876066 35.0 33.0 35.0 29.0 36.0 92-93 33.09878965631915 35.0 33.0 35.0 29.0 36.0 94-95 33.08487452098663 34.5 33.0 35.0 29.0 36.0 96-97 33.138624040238 34.0 33.0 35.0 29.0 35.0 98-99 33.18716174733086 34.0 33.0 35.0 29.0 35.0 100-101 31.936327728141173 33.0 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 2.0 18 3.0 19 21.0 20 87.0 21 341.0 22 1494.0 23 4683.0 24 11987.0 25 25707.0 26 46399.0 27 75296.0 28 111689.0 29 154170.0 30 206332.0 31 268849.0 32 352840.0 33 476565.0 34 685229.0 35 1042951.0 36 1774136.0 37 2891106.0 38 2921872.0 39 1066314.0 40 13725.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.917031431199945 20.329878528320492 13.44862373667747 24.3044663038021 2 14.967351714366778 21.765815010248595 40.50317118740777 22.763662087976854 3 18.232085822798748 26.497355542315777 30.56913787151572 24.701420763369754 4 12.42660918246489 18.097986637923466 39.112416734305725 30.362987445305915 5 12.836850483424048 38.27512868667712 35.97660592928069 12.911414900618146 6 29.82354059772998 38.43639348129655 18.82579821838459 12.914267702588875 7 26.25357758182258 32.620177157582084 23.67405062299916 17.452194637596175 8 24.468285477480777 36.75699579903798 21.522732302731388 17.25198642074986 9 25.787439705909748 16.192916690089984 21.08023501238812 36.93940859161215 10-11 24.085089820201336 26.66222351982296 29.494430830993473 19.758255828982232 12-13 24.87780221957774 24.285930483168695 29.36875147701073 21.467515820242838 14-15 21.912502169917435 25.67533270830919 26.818308382648638 25.59385673912474 16-17 21.70139292444564 28.721460611345016 27.474277807754238 22.102868656455108 18-19 21.738097755093587 28.084366723068037 28.9316813934621 21.245854128376276 20-21 22.49833777006806 27.356376821796584 28.755094056742834 21.390191351392524 22-23 22.175008541784546 27.34979041558394 28.5872640621846 21.88793698044691 24-25 21.948209399557143 27.42639517622134 28.710537203840268 21.914858220381245 26-27 21.92042292351996 27.594183192942896 28.626306188761703 21.859087694775443 28-29 21.889589697019733 27.671798893750516 28.611458763312143 21.827152645917607 30-31 22.18376214120969 27.55492378913277 28.46879848695782 21.79251558269972 32-33 21.95206766036723 27.66562065298151 28.489000936843762 21.893310749807497 34-35 22.036360365879986 27.71504052090666 28.513802450731323 21.734796662482026 36-37 22.08696485463511 27.620083588871992 28.40758570497584 21.88536585151705 38-39 21.906033426257057 27.74180863284189 28.499550320167323 21.85260762073373 40-41 22.148110187715567 27.632603190556427 28.359556328430717 21.85973029329729 42-43 22.03337911659551 27.727882246546294 28.20745849092748 22.031280145930722 44-45 22.136281306396338 27.82461240163341 28.04491601114178 21.994190280828477 46-47 22.196728587954883 27.77455934382519 27.80891054014532 22.21980152807461 48-49 22.120269045204306 27.849084807061608 27.8487661296155 22.181880018118584 50-51 22.074180031082655 27.99366087422039 27.750865377022055 22.181293717674897 52-53 22.234510859679123 27.896109894524955 27.677892677441875 22.19148656835405 54-55 22.218454255614684 27.821285161189003 27.70027043073748 22.25999015245884 56-57 22.251867707093005 27.951990009720873 27.61065147222469 22.185490810961426 58-59 22.20585609733396 27.991500221386346 27.63641809828358 22.16622558299611 60-61 22.28536152154176 27.95421345703644 27.60444726692386 22.15597775449794 62-63 22.243953901918786 28.035973472668925 27.57759714753219 22.1424754778801 64-65 22.201223187588987 27.94228275161989 27.570909940509758 22.28558412028137 66-67 22.280505680023083 27.9867492227821 27.447991683054045 22.284753414140766 68-69 22.277357476993824 27.942977018259118 27.528334987341413 22.251330517405645 70-71 22.249876809734424 27.72866877633815 27.596673287866214 22.424781126061216 72-73 22.30947915469777 27.736483962196157 27.573902756154283 22.38013412695179 74-75 22.15242900699123 27.85815783579078 27.56510496271325 22.424308194504743 76-77 22.25402771917307 27.812343035525554 27.499583862384085 22.43404538291729 78-79 22.288118553153105 27.799595159350847 27.468403696040294 22.443882591455754 80-81 22.27465135599498 27.789725397298987 27.480884165997928 22.45473908070811 82-83 22.282582492102083 27.780539408096228 27.58512650715937 22.351751592642323 84-85 22.42001955774669 27.70718075075932 27.497427968371408 22.37537172312258 86-87 22.23877491396582 27.72978441336479 27.608052434812873 22.423388237856514 88-89 22.372008338690474 27.71355548081576 27.526528133146577 22.387908047347185 90-91 22.39143336331777 27.67588580797529 27.578523489467806 22.354157339239134 92-93 22.36780835970978 27.638044575958048 27.611744600710963 22.382402463621208 94-95 22.233434023626835 27.640505183618842 27.6876415319991 22.438419260755232 96-97 22.22840107244819 27.68087804946307 27.713608021242752 22.37711285684599 98-99 22.46489220840993 28.26780136008947 27.775270282430675 21.49203614906992 100-101 26.597628464347174 35.26191640919509 28.37006658078021 9.77038854567753 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1762.0 1 1696.5 2 2690.0 3 4026.0 4 5489.0 5 9063.5 6 12221.0 7 14380.0 8 15958.5 9 15918.5 10 14546.0 11 12975.5 12 13698.0 13 17762.0 14 27434.0 15 40632.0 16 51370.5 17 57837.5 18 59908.0 19 58332.0 20 55165.0 21 52466.5 22 52968.0 23 59405.5 24 71902.5 25 90129.0 26 113717.0 27 139200.0 28 166302.5 29 194794.0 30 221688.5 31 248447.5 32 276045.5 33 304343.0 34 331841.5 35 356404.0 36 383358.0 37 407119.5 38 424499.0 39 440165.5 40 456737.5 41 472943.5 42 482600.0 43 491089.0 44 500378.5 45 508821.0 46 515545.5 47 519517.0 48 519426.0 49 512928.5 50 503172.5 51 488854.5 52 468688.0 53 445976.5 54 421312.5 55 392318.5 56 360028.5 57 325730.0 58 289370.0 59 251780.0 60 213569.5 61 176392.5 62 141447.5 63 110962.5 64 85117.5 65 64836.5 66 49875.0 67 38733.0 68 29711.5 69 21985.0 70 16031.5 71 11566.0 72 8281.0 73 5819.0 74 4066.0 75 2848.5 76 1918.5 77 1263.0 78 842.5 79 592.5 80 437.0 81 328.0 82 247.5 83 170.5 84 115.0 85 84.5 86 66.5 87 51.5 88 32.0 89 19.5 90 14.0 91 12.0 92 11.0 93 8.0 94 5.0 95 3.0 96 2.0 97 2.0 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00314050702620444 3 9.067080653083685E-5 4 1.648560118742488E-5 5 5.7699604155987084E-5 6 0.0 7 8.24280059371244E-6 8 4.4511123206047185E-4 9 1.0715640771826174E-4 10-11 5.7699604155987084E-5 12-13 2.637696189987981E-4 14-15 8.24280059371244E-6 16-17 4.6983963384160913E-4 18-19 1.2364200890568661E-5 20-21 7.830980405362045E-5 22-23 0.0 24-25 0.0 26-27 6.599616760254732E-5 28-29 8.25559248282073E-6 30-31 4.961225336663584E-5 32-33 3.3580002635822927E-4 34-35 0.0 36-37 3.34478126531152E-4 38-39 0.001057216604770355 40-41 0.0 42-43 0.0 44-45 2.898837159596475E-4 46-47 0.0 48-49 0.0 50-51 3.5794034503570075E-5 52-53 5.694359072996306E-4 54-55 0.0029126324842613984 56-57 0.0034759069105045367 58-59 0.004142211894452518 60-61 9.82891126047801E-4 62-63 0.0 64-65 6.575922164290712E-4 66-67 0.0 68-69 0.0 70-71 1.0043024820482187E-5 72-73 2.1362770824619737E-4 74-75 4.120394422695915E-5 76-77 0.0 78-79 0.0 80-81 5.358449170501352E-4 82-83 0.0 84-85 0.0 86-87 5.5904464636764375E-6 88-89 0.0 90-91 0.0011087400883977683 92-93 1.470584688589869E-4 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 310.0 20-21 1019.0 22-23 2104.0 24-25 4946.0 26-27 7360.0 28-29 15011.0 30-31 31445.0 32-33 38549.0 34-35 53107.0 36-37 82204.0 38-39 99091.0 40-41 98170.0 42-43 110792.0 44-45 129720.0 46-47 130237.0 48-49 123616.0 50-51 113549.0 52-53 109496.0 54-55 118333.0 56-57 124516.0 58-59 125304.0 60-61 124572.0 62-63 118287.0 64-65 120812.0 66-67 129230.0 68-69 130253.0 70-71 128941.0 72-73 122459.0 74-75 123818.0 76-77 120716.0 78-79 129443.0 80-81 133847.0 82-83 127153.0 84-85 127313.0 86-87 132376.0 88-89 143727.0 90-91 161426.0 92-93 158517.0 94-95 178597.0 96-97 267352.0 98-99 1014948.0 100-101 6919133.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.96517720974019 #Duplication Level Percentage of deduplicated Percentage of total 1 90.1298462231371 77.48028202458615 2 7.018649906579714 12.067189659845031 3 1.6525324027006207 4.261807225289898 4 0.5866935634779471 2.017408646087827 5 0.2317998773613311 0.9963358767281436 6 0.13027186234349594 0.6719306239080907 7 0.07715374998631014 0.46427750529783995 8 0.046455337688289404 0.3194833069369697 9 0.02504314262956486 0.1937554374635408 >10 0.09935102273318469 1.3075227103550802 >50 0.001671670930253616 0.09525058745759407 >100 4.5644465622478395E-4 0.06559666277424042 >500 4.488734639731637E-5 0.022971733813574702 >1k 2.990842955997663E-5 0.03618799945604162 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 8.242800593712442E-6 0.0 4 0.0 5.769960415598709E-5 0.0 8.242800593712442E-6 0.0 5 0.0 6.594240474969954E-5 0.0 1.6485601187424884E-5 0.0 6 0.0 6.594240474969954E-5 0.0 1.6485601187424884E-5 0.0 7 0.0 6.594240474969954E-5 0.0 1.6485601187424884E-5 0.0 8 0.0 8.242800593712441E-5 0.0 3.297120237484977E-5 0.0 9 0.0 1.566132112805364E-4 0.0 4.1214002968562206E-5 4.1214002968562206E-5 10-11 0.0 1.566132112805364E-4 0.0 5.769960415598709E-5 5.357820385913087E-5 12-13 0.0 1.566132112805364E-4 0.0 1.0303500742140551E-4 6.594240474969954E-5 14-15 0.0 2.3079841662394833E-4 0.0 1.1127780801511796E-4 7.418520534341197E-5 16-17 0.0 2.472840178113732E-4 0.0 1.607346115773926E-4 7.418520534341197E-5 18-19 0.0 2.7613381988936676E-4 0.0 2.0194861454595479E-4 7.418520534341197E-5 20-21 0.0 3.17347822857929E-4 0.0 2.1431281543652346E-4 8.654940623398063E-5 22-23 0.0 3.709260267170598E-4 0.0 2.7201241959251055E-4 1.1127780801511796E-4 24-25 0.0 4.203828302793345E-4 0.0 3.132264225610727E-4 1.1539920831197418E-4 26-27 0.0 4.4511123206047185E-4 0.0 4.038972290919096E-4 1.236420089056866E-4 28-29 0.0 4.4923263235732805E-4 0.0 9.72650470058068E-4 1.236420089056866E-4 30-31 0.0 5.440248391850211E-4 0.0 0.0022090705591149345 1.236420089056866E-4 32-33 0.0 5.687532409661585E-4 0.0 0.00415437149923107 1.3188480949939907E-4 34-35 0.0 6.55302647200139E-4 0.0 0.006507691068735972 1.3188480949939907E-4 36-37 0.0 7.253664522466948E-4 0.0 0.010357078945999684 1.3600620979625528E-4 38-39 0.0 7.418520534341196E-4 0.0 0.016580393394252574 1.4424901038996774E-4 40-41 0.0 8.160372587775317E-4 0.0 0.023388946684659052 1.566132112805364E-4 42-43 0.0 8.613726620429501E-4 0.0 0.029002293888977224 1.6485601187424883E-4 44-45 0.0 9.767718703549244E-4 0.0 0.03524209393841754 1.6485601187424883E-4 46-47 0.0 0.001067442676885761 0.0 0.04229793124663539 1.6485601187424883E-4 48-49 0.0 0.0010715640771826174 0.0 0.049419710959602944 1.6485601187424883E-4 50-51 0.0 0.0011787204849008793 0.0 0.05623238565030628 1.7309881246796126E-4 52-53 0.0 0.001211691687275729 0.0 0.06306566734249389 1.7309881246796126E-4 54-55 0.0 0.001215813087572585 0.0 0.06970524322072927 1.7309881246796126E-4 56-57 0.0 0.0012281772884631538 0.0 0.07619232728798095 1.7309881246796126E-4 58-59 0.0 0.0012364200890568663 0.0 0.08267941135523263 1.7309881246796126E-4 60-61 0.0 0.0012570270905411472 0.0 0.0889810324091258 1.7309881246796126E-4 62-63 0.0 0.0012982410935097094 0.0 0.0951754970553007 1.7309881246796126E-4 64-65 0.0 0.0014589757050871021 0.0 0.10120922708989821 1.7309881246796126E-4 66-67 0.0 0.0014713399059776708 0.0 0.10729653532835484 1.7309881246796126E-4 68-69 0.0 0.0015043111083525205 0.0 0.11354045677809202 1.7309881246796126E-4 70-71 0.0 0.001533160910430514 0.0 0.11940520940051842 1.7309881246796126E-4 72-73 0.0 0.0015414037110242265 0.0 0.1245652025721824 1.7309881246796126E-4 74-75 0.0 0.0015578893122116513 0.0 0.12914407830198965 1.7309881246796126E-4 76-77 0.0 0.0015908605145865012 0.0 0.13293164517480055 1.7309881246796126E-4 78-79 0.0 0.001607346115773926 0.0 0.13639362142415978 1.7309881246796126E-4 80-81 0.0 0.001607346115773926 0.0 0.13798036053844942 1.7309881246796126E-4 82-83 0.0 0.001607346115773926 0.0 0.1385862063820873 1.854630133585299E-4 84-85 0.0 0.0016155889163676383 0.0 0.13922914482839682 1.9782721424909858E-4 86-87 0.0 0.0016403173181487758 0.0 0.13944757904413022 1.9782721424909858E-4 88-89 0.0 0.0017145025234921877 0.0 0.13950115724798937 2.0607001484281102E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12130 0.0 46.866245 1 GTATCAA 21785 0.0 35.704422 1 TCAACGC 25770 0.0 29.277496 4 ATCAACG 26040 0.0 28.97393 3 CAACGCA 26520 0.0 28.40244 5 AACGCAG 27360 0.0 27.621695 6 TATCAAC 28115 0.0 27.118225 2 ACGCAGA 31980 0.0 23.579266 7 CGCAGAG 32490 0.0 23.196331 8 GTACATG 33565 0.0 22.491627 1 TACATGG 33270 0.0 22.366013 2 ACATGGG 34090 0.0 21.301933 3 CATGGGG 24540 0.0 19.535677 4 GCAGAGT 40135 0.0 18.725847 9 AGAGTAC 35245 0.0 17.58106 10-11 GAGTACT 22745 0.0 17.27169 12-13 CAGAGTA 38820 0.0 16.841026 10-11 AGTACTT 25675 0.0 15.2439375 12-13 GTACTTT 26245 0.0 14.969222 14-15 TATACTG 6480 0.0 14.77078 5 >>END_MODULE