##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139882_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10831237 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.330202542885914 33.0 31.0 34.0 31.0 34.0 2 32.50632250037553 34.0 31.0 34.0 31.0 34.0 3 32.62807415256447 34.0 31.0 34.0 31.0 34.0 4 36.14498870258309 37.0 35.0 37.0 35.0 37.0 5 35.981229383125864 37.0 35.0 37.0 35.0 37.0 6 36.020685356621776 37.0 35.0 37.0 35.0 37.0 7 35.99794354052081 37.0 35.0 37.0 35.0 37.0 8 35.98160071652019 37.0 35.0 37.0 35.0 37.0 9 37.82324752011243 39.0 38.0 39.0 35.0 39.0 10-11 37.701102976511365 39.0 37.0 39.0 35.0 39.0 12-13 37.718459581301744 39.0 37.0 39.0 35.0 39.0 14-15 39.03458418461345 40.0 38.0 41.0 36.0 41.0 16-17 38.981878939589265 40.0 38.0 41.0 36.0 41.0 18-19 39.04559003740755 40.0 38.5 41.0 36.0 41.0 20-21 39.04595622333804 40.0 39.0 41.0 36.0 41.0 22-23 39.00628793492969 40.0 39.0 41.0 36.0 41.0 24-25 38.989208306756865 40.0 38.0 41.0 35.5 41.0 26-27 38.88904497798253 40.0 38.0 41.0 35.0 41.0 28-29 38.806456469895316 40.0 38.0 41.0 35.0 41.0 30-31 38.66149580020338 40.0 38.0 41.0 35.0 41.0 32-33 38.569740901484835 40.0 38.0 41.0 35.0 41.0 34-35 38.52299188234044 40.0 38.0 41.0 34.0 41.0 36-37 38.42281777401129 40.0 38.0 41.0 34.0 41.0 38-39 38.38116618583087 40.0 38.0 41.0 34.0 41.0 40-41 38.39716949351966 40.0 38.0 41.0 34.0 41.0 42-43 38.369325037183145 40.0 38.0 41.0 34.0 41.0 44-45 38.260875836104255 40.0 38.0 41.0 34.0 41.0 46-47 38.21071822425981 40.0 38.0 41.0 33.0 41.0 48-49 38.19432960412267 40.0 38.0 41.0 33.0 41.0 50-51 38.105357624144126 40.0 37.5 41.0 33.0 41.0 52-53 37.97798474445921 40.0 37.0 41.0 33.0 41.0 54-55 37.80725049880681 39.5 37.0 41.0 33.0 41.0 56-57 37.68078115724661 39.0 36.5 41.0 33.0 41.0 58-59 37.45701544700728 39.0 36.0 41.0 32.5 41.0 60-61 37.297514093896595 39.0 36.0 40.5 32.0 41.0 62-63 37.09590485173791 39.0 35.0 40.0 32.0 41.0 64-65 36.79527982949854 38.0 35.0 40.0 31.0 41.0 66-67 36.7351182730284 38.0 35.0 40.0 31.0 41.0 68-69 36.507663186773954 37.5 35.0 40.0 31.0 41.0 70-71 36.20311622573408 37.0 35.0 39.5 31.0 41.0 72-73 35.891978031014126 36.5 34.5 39.0 31.0 41.0 74-75 35.494148244288446 36.0 34.0 39.0 30.5 40.0 76-77 33.44899667009291 34.5 32.0 36.5 27.5 39.0 78-79 34.63739932456784 35.0 34.0 37.0 30.0 39.0 80-81 34.64509251754086 35.0 34.0 37.0 30.0 39.0 82-83 34.35965800970662 35.0 34.0 36.5 30.0 39.0 84-85 34.10048405819511 35.0 34.0 36.0 30.0 37.0 86-87 33.89019300308915 35.0 34.0 36.0 30.0 37.0 88-89 33.65107370017873 35.0 33.5 35.0 29.5 37.0 90-91 33.48600468676176 35.0 33.0 35.0 29.5 36.0 92-93 33.41947597524828 35.0 33.0 35.0 29.0 36.0 94-95 33.392669467430096 35.0 33.0 35.0 30.0 36.0 96-97 33.427345175600756 35.0 33.0 35.0 30.0 35.5 98-99 33.45430231509572 35.0 33.0 35.0 30.0 35.0 100-101 32.214631882002784 34.0 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 26.0 20 73.0 21 259.0 22 971.0 23 3241.0 24 8550.0 25 18499.0 26 34227.0 27 55712.0 28 83643.0 29 116234.0 30 155021.0 31 203557.0 32 266659.0 33 362279.0 34 523821.0 35 798367.0 36 1401447.0 37 2540328.0 38 2995196.0 39 1245471.0 40 17649.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.38548533283871 20.621162661291596 13.510211252879056 24.483140752990632 2 14.57443295074095 21.68555838320133 41.16055187627167 22.579456789786054 3 17.935056123363285 26.70307312309619 30.902190323923534 24.459680429616988 4 12.139697101918397 18.390185273441602 39.23618490746299 30.23393271717701 5 12.6819092652871 38.207583925879476 36.28849334110346 12.822013467729962 6 29.298989579860546 38.656886558755936 19.039856666417695 13.004267194965818 7 25.730754483536828 32.799540809604665 23.80189815807742 17.667806548781087 8 24.10336293487126 36.97791767001865 21.869103258606575 17.04961613650351 9 25.3563102442467 16.36687128810316 21.317670463930153 36.95914800371999 10-11 23.830869486419505 26.823677415119775 29.63986648611474 19.705586612345982 12-13 24.670437404861183 24.324303488644507 29.525951041953984 21.47930806454033 14-15 21.761195039919954 25.80799523673959 26.804594286164836 25.626215437175613 16-17 21.587965045000164 29.013774395650042 27.461164676102324 21.93709588324747 18-19 21.557916238006793 28.224472421755703 28.987155391392506 21.23045594884499 20-21 22.333382760358393 27.460016275833084 28.766510119029263 21.44009084477926 22-23 21.9678242877665 27.65530883554356 28.598677578273374 21.77818929841656 24-25 21.862197616513768 27.75314410479341 28.741926300017802 21.642731978675016 26-27 21.890275793729717 27.945568146743803 28.636860000995124 21.527296058531352 28-29 21.634254317301632 28.056055693569036 28.61473635073259 21.69495363839674 30-31 22.25113770464648 27.744197710935104 28.520144612307725 21.484519972110697 32-33 21.579059265550047 28.13953828798738 28.551935340335728 21.729467106126847 34-35 21.824847363786215 28.098319516685542 28.656502226417707 21.420330893110535 36-37 21.764577059077034 28.01961965791948 28.57479248312375 21.641010799879734 38-39 21.66302747301257 27.819359658135923 28.753729433821945 21.763883435029566 40-41 21.861096711646518 27.70152432987058 28.709642951895336 21.727736006587563 42-43 21.924888438921652 27.738617923539504 28.569183789504105 21.767309848034742 44-45 21.85481966854839 28.03201339387636 28.319365117772062 21.79380181980319 46-47 22.070787694960092 27.78461610661503 27.97307701332688 22.171519185098003 48-49 21.94702639018355 27.869180482345623 28.043604038672747 22.140189088798078 50-51 21.77962092897715 28.034298371810955 28.14253701109259 22.043543688119307 52-53 21.939159227307826 27.993575561066848 28.15316356714409 21.914101644481235 54-55 21.8856877901124 27.9649449534367 28.00212257371941 22.147244682731497 56-57 22.09950776752428 28.17842569902221 27.699303366568557 22.02276316688495 58-59 21.856736825688834 28.343831193976488 28.015538319047966 21.78389366128671 60-61 22.077021579933703 28.422824131765434 27.697685245415165 21.802469042885697 62-63 21.914655112060554 28.547880543199422 27.66248324328771 21.874981101452306 64-65 21.90761215433328 28.43266914664192 27.65335980416472 22.006358894860085 66-67 22.038055593936818 28.33363077644741 27.59056023564434 22.037753393971435 68-69 22.01668211580291 28.256583704464493 27.674931103209083 22.05180307652351 70-71 22.002107445194348 28.02188314952623 27.718270698574372 22.25773870670506 72-73 22.085482816352293 28.05265432723867 27.745633047196545 22.11622980921249 74-75 21.93045522801756 28.196592887429496 27.702182556117933 22.170769328435014 76-77 22.00927684551636 28.136089563229085 27.627852432194462 22.226781159060092 78-79 22.00987776090767 28.156019923099514 27.59368413698484 22.240418179007975 80-81 21.98503365907423 28.166075373122645 27.642766007665177 22.206124960137945 82-83 22.056696468565566 28.09346269286156 27.739772016064872 22.110068822508005 84-85 22.180150915283352 28.06969497201677 27.66344575488531 22.086708357814572 86-87 21.969806262062278 28.120204797472077 27.74892637044789 22.161062570017755 88-89 22.13654987674375 28.07246961118285 27.634155193155564 22.15682531891784 90-91 22.111253386369267 28.102046223218775 27.70008654192268 22.08661384848928 92-93 22.12446282652499 28.047746128260115 27.738860683140153 22.088930362074738 94-95 21.98822841563072 28.081880228856697 27.794846065000318 22.135045290512267 96-97 21.94279921304293 28.12568341320647 27.847168326443434 22.08434904730716 98-99 22.247142838510253 28.693474209420955 27.86591803292664 21.193464919142148 100-101 26.237445867022462 35.717652875295244 28.47996293134965 9.564938326332644 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1908.0 1 1783.5 2 2658.5 3 3933.5 4 5389.0 5 8912.0 6 11898.0 7 13623.5 8 14463.0 9 13913.5 10 12684.5 11 11512.5 12 12293.0 13 16024.0 14 24914.0 15 37168.5 16 47314.5 17 53660.5 18 56002.5 19 54829.5 20 52133.5 21 50265.5 22 51170.5 23 57095.0 24 68775.0 25 85761.0 26 108266.0 27 133503.0 28 159568.0 29 186712.5 30 211040.0 31 232813.5 32 258002.0 33 283017.0 34 306540.0 35 329971.0 36 355240.5 37 377474.0 38 394230.5 39 408144.0 40 422105.0 41 435781.5 42 444208.5 43 451407.0 44 458469.5 45 466679.0 46 477224.0 47 487533.5 48 485640.5 49 474592.0 50 463527.0 51 445557.0 52 418742.0 53 390120.0 54 363595.5 55 335684.5 56 306088.5 57 275009.0 58 242901.0 59 211043.0 60 177657.0 61 144734.0 62 115083.5 63 89710.5 64 68456.5 65 51544.5 66 38985.5 67 29937.5 68 23093.0 69 16880.5 70 12118.5 71 8661.0 72 6069.0 73 4207.5 74 2881.5 75 2030.0 76 1439.0 77 1008.0 78 687.0 79 459.5 80 299.5 81 196.0 82 142.5 83 102.0 84 78.0 85 55.0 86 39.5 87 33.5 88 22.0 89 10.0 90 6.5 91 6.0 92 4.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004394696561436149 3 7.38604464106916E-5 4 2.769766740400935E-5 5 1.2002322541737384E-4 6 0.0 7 0.0 8 3.969998994574673E-4 9 1.477208928213832E-4 10-11 3.69302232053458E-5 12-13 2.26197617132743E-4 14-15 4.616277900668225E-6 16-17 4.985580132721683E-4 18-19 0.0 20-21 2.3082353822107714E-5 22-23 0.0 24-25 0.0 26-27 9.701748837245402E-5 28-29 4.623653129843276E-6 30-31 4.168941634956075E-5 32-33 3.996484766352721E-4 34-35 0.0 36-37 3.332386966724802E-4 38-39 0.001140859401339473 40-41 0.0 42-43 0.0 44-45 3.219671451065921E-4 46-47 0.0 48-49 0.0 50-51 4.047815836522886E-5 52-53 5.421697038229204E-4 54-55 0.0033251377049154894 56-57 0.0035810770235742196 58-59 0.004243523057712975 60-61 0.0010482893127979728 62-63 5.448229668596175E-6 64-65 5.519939373401874E-4 66-67 0.0 68-69 0.0 70-71 5.75176057077251E-6 72-73 2.6802309659901995E-4 74-75 5.89988427376997E-6 76-77 0.0 78-79 0.0 80-81 5.831565959614871E-4 82-83 0.0 84-85 0.0 86-87 3.8385596495855665E-5 88-89 0.0 90-91 0.0012537368782413634 92-93 2.080665104064801E-4 94-95 6.83186900191791E-6 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 305.0 20-21 834.0 22-23 1814.0 24-25 4142.0 26-27 7048.0 28-29 15234.0 30-31 33079.0 32-33 40830.0 34-35 55054.0 36-37 85138.0 38-39 100399.0 40-41 97819.0 42-43 109363.0 44-45 126180.0 46-47 126154.0 48-49 118395.0 50-51 108171.0 52-53 104440.0 54-55 115551.0 56-57 123852.0 58-59 124305.0 60-61 126371.0 62-63 119523.0 64-65 120200.0 66-67 128218.0 68-69 117087.0 70-71 113520.0 72-73 107247.0 74-75 108066.0 76-77 106138.0 78-79 112717.0 80-81 115236.0 82-83 108647.0 84-85 107209.0 86-87 111995.0 88-89 119811.0 90-91 130522.0 92-93 127448.0 94-95 143673.0 96-97 218091.0 98-99 866806.0 100-101 6124605.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.63031364200786 #Duplication Level Percentage of deduplicated Percentage of total 1 88.91047779826545 74.35611144329715 2 7.453340227856504 12.466503618724674 3 1.9943351331826706 5.003606180860267 4 0.7549545987863953 2.5254835952792978 5 0.3489407942092486 1.4591014031105392 6 0.1876847056800861 0.941767848110012 7 0.1020384128460139 0.597345312889138 8 0.06411191107927806 0.4289359385398834 9 0.04731941499291307 0.35616037654922844 >10 0.13420269160997483 1.6588388467237103 >50 0.0020902134142398664 0.11798782166254028 >100 4.6695329175925715E-4 0.05891066502447999 >500 1.857259798588843E-5 0.010561978924006054 >1k 1.857218748145733E-5 0.018684970305032158 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.232555801336449E-6 2 0.0 2.769766740400935E-5 0.0 0.0 9.232555801336449E-6 3 0.0 3.6930223205345795E-5 0.0 0.0 9.232555801336449E-6 4 0.0 9.23255580133645E-5 0.0 0.0 2.769766740400935E-5 5 0.0 1.0155811381470094E-4 0.0 0.0 2.769766740400935E-5 6 0.0 1.107906696160374E-4 0.0 0.0 2.769766740400935E-5 7 9.232555801336449E-6 1.107906696160374E-4 0.0 0.0 2.769766740400935E-5 8 9.232555801336449E-6 1.107906696160374E-4 0.0 0.0 2.769766740400935E-5 9 9.232555801336449E-6 2.0311622762940188E-4 0.0 0.0 3.6930223205345795E-5 10-11 1.8465111602672897E-5 2.0311622762940188E-4 0.0 9.232555801336449E-6 3.6930223205345795E-5 12-13 2.769766740400935E-5 2.077325055300701E-4 0.0 9.232555801336449E-6 3.6930223205345795E-5 14-15 2.769766740400935E-5 2.9544178564276636E-4 0.0 1.8465111602672897E-5 6.462789060935515E-5 16-17 2.769766740400935E-5 3.1390689724543927E-4 0.0 1.8465111602672897E-5 9.23255580133645E-5 18-19 2.769766740400935E-5 3.4622084255011686E-4 0.0 1.8465111602672897E-5 1.292557812187103E-4 20-21 2.769766740400935E-5 3.785347878547944E-4 0.0 4.154650110601402E-5 1.3387205911937852E-4 22-23 2.769766740400935E-5 4.10848733159472E-4 0.0 6.462789060935515E-5 1.523371707220514E-4 24-25 2.769766740400935E-5 4.385464005634813E-4 0.0 1.0617439171536917E-4 1.661860044240561E-4 26-27 2.769766740400935E-5 4.662440679674907E-4 0.0 2.0311622762940188E-4 1.661860044240561E-4 28-29 2.769766740400935E-5 4.708603458681589E-4 0.0 8.263137442196122E-4 1.661860044240561E-4 30-31 2.769766740400935E-5 5.493370701795188E-4 0.0 0.003083673637646374 1.661860044240561E-4 32-33 3.2313945304677574E-5 5.954998491862009E-4 0.0 0.006887486627796991 1.84651116026729E-4 34-35 3.6930223205345795E-5 6.878254071995655E-4 0.0 0.012223903880969458 1.9388367182806543E-4 36-37 3.6930223205345795E-5 8.078486326169393E-4 0.0 0.019905390307681386 1.9388367182806543E-4 38-39 3.6930223205345795E-5 8.863253569282992E-4 0.0 0.03302485210138048 2.0311622762940188E-4 40-41 9.23255580133645E-5 9.924997486436683E-4 0.0 0.04541032570887332 2.1234878343073834E-4 42-43 9.23255580133645E-5 0.0010155811381470094 0.0 0.055538439422939415 2.1696506133140657E-4 44-45 1.1079066961603738E-4 0.0010940578624583693 0.0 0.0668714016690799 2.215813392320748E-4 46-47 1.292557812187103E-4 0.0011679183088690607 0.0 0.07984775884785827 2.4004645083474768E-4 48-49 1.3848833702004675E-4 0.0011817671425710654 0.0 0.09204396506142373 2.585115624374206E-4 50-51 1.4772089282138318E-4 0.0013525694248957899 0.0 0.10390779926614108 2.585115624374206E-4 52-53 1.4772089282138318E-4 0.001357185702796458 0.0 0.11473297094320806 2.723603961394253E-4 54-55 1.4772089282138318E-4 0.0013618019806971263 0.0 0.1257243286246991 2.9082550774209813E-4 56-57 1.4772089282138318E-4 0.0013848833702004675 0.0 0.13469375658569746 2.9544178564276636E-4 58-59 1.4772089282138318E-4 0.0014033484818031404 0.0 0.14249526623782677 3.000580635434346E-4 60-61 1.523371707220514E-4 0.0014910577619158365 0.0 0.14962741559435916 3.046743414441028E-4 62-63 1.5695344862271963E-4 0.0015326042630218505 0.0 0.15611328604479802 3.231394530467757E-4 64-65 1.661860044240561E-4 0.0017172553790485796 0.0 0.16276995877756162 3.231394530467757E-4 66-67 1.8003483812606077E-4 0.001763418158055262 0.0 0.16932507339651048 3.231394530467757E-4 68-69 1.9388367182806543E-4 0.001809580937061944 0.0 0.17598636240717475 3.231394530467757E-4 70-71 1.9388367182806543E-4 0.0018372786044659533 0.0 0.18262457002833565 3.323720088481122E-4 72-73 1.9388367182806543E-4 0.001851127438167958 0.0 0.18805792911742214 3.969998994574673E-4 74-75 1.9388367182806543E-4 0.0019203716066779814 0.0 0.19253110240316965 3.969998994574673E-4 76-77 1.9388367182806543E-4 0.002026545998393351 0.0 0.196616508345261 3.969998994574673E-4 78-79 1.9849994972873366E-4 0.0020865576111020376 0.0 0.20012487954976887 3.969998994574673E-4 80-81 2.0311622762940188E-4 0.0021004064448040425 0.0 0.2015605419768767 4.154650110601402E-4 82-83 2.0311622762940188E-4 0.00213272039010872 0.0 0.20209141393545355 4.5239523426548605E-4 84-85 2.0311622762940188E-4 0.0021604180575127293 0.0 0.20262690217193105 4.570115121661542E-4 86-87 2.077325055300701E-4 0.002178883169115402 0.0 0.20283925095536182 4.7547662376882713E-4 88-89 2.1696506133140657E-4 0.002234278503923421 0.0 0.20289464629016982 4.8009290166949536E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11745 0.0 44.116703 1 GTATCAA 19735 0.0 33.545105 1 CTTATAC 10220 0.0 31.621754 1 TCAACGC 22765 0.0 28.246178 4 ATCAACG 22815 0.0 28.148142 3 CAACGCA 23150 0.0 27.758621 5 AACGCAG 23985 0.0 26.757877 6 TATCAAC 24460 0.0 26.525959 2 TATACAC 14010 0.0 26.067436 3 ACGCAGA 27915 0.0 23.035078 7 CGCAGAG 28650 0.0 22.429739 8 TTATACA 15640 0.0 21.770384 2 TACATGG 27910 0.0 21.253172 2 GTACATG 28425 0.0 21.158047 1 ACATGGG 28335 0.0 20.322445 3 CATGGGG 21130 0.0 18.805302 4 ACACATC 17275 0.0 18.53983 6 ACATCTC 17375 0.0 18.4094 8 GCAGAGT 34990 0.0 18.318384 9 TACACAT 19650 0.0 18.207903 5 >>END_MODULE