##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139876_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4154061 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.335904792924325 34.0 31.0 34.0 31.0 34.0 2 32.54444361794398 34.0 31.0 34.0 31.0 34.0 3 32.59023134229372 34.0 31.0 34.0 31.0 34.0 4 35.80189867216683 37.0 35.0 37.0 34.0 37.0 5 35.67857982826925 37.0 35.0 37.0 34.0 37.0 6 36.12277214995158 37.0 35.0 37.0 35.0 37.0 7 36.077586005597894 37.0 35.0 37.0 35.0 37.0 8 36.06000561859828 37.0 35.0 37.0 35.0 37.0 9 37.635104539870746 39.0 37.0 39.0 35.0 39.0 10-11 37.53660213463404 39.0 37.0 39.0 35.0 39.0 12-13 37.49154177081174 39.0 37.0 39.0 35.0 39.0 14-15 38.63508829071118 40.0 38.0 41.0 35.0 41.0 16-17 38.60451339063148 40.0 38.0 41.0 35.0 41.0 18-19 38.60091269723772 40.0 38.0 41.0 35.0 41.0 20-21 38.59673340514798 40.0 38.0 41.0 35.0 41.0 22-23 38.52978143636405 40.0 38.0 41.0 34.0 41.0 24-25 38.46756293216213 40.0 38.0 41.0 34.0 41.0 26-27 38.30993690121108 40.0 38.0 41.0 34.0 41.0 28-29 38.19193977717761 40.0 38.0 41.0 34.0 41.0 30-31 38.09326354193412 40.0 38.0 41.0 34.0 41.0 32-33 37.992409204937765 39.5 38.0 41.0 34.0 41.0 34-35 38.01046750345308 40.0 38.0 41.0 34.0 41.0 36-37 37.97398130396332 40.0 38.0 41.0 34.0 41.0 38-39 37.892195912451385 39.5 37.0 41.0 33.0 41.0 40-41 37.864002840420696 39.0 37.0 41.0 33.0 41.0 42-43 37.85020330716421 39.0 37.0 41.0 33.0 41.0 44-45 37.8721441619325 39.5 37.0 41.0 33.0 41.0 46-47 37.854857514054174 39.5 37.0 41.0 33.0 41.0 48-49 37.77438829279726 39.0 37.0 41.0 33.0 41.0 50-51 37.67944619300839 39.0 37.0 41.0 33.0 41.0 52-53 37.47576369262174 39.0 37.0 41.0 32.5 41.0 54-55 37.356431545171404 39.0 36.0 41.0 32.0 41.0 56-57 37.25923553607869 38.5 36.0 40.5 32.0 41.0 58-59 37.07594455001821 38.0 35.5 40.0 32.0 41.0 60-61 36.880034063413646 38.0 35.0 40.0 31.5 41.0 62-63 36.6500146636443 38.0 35.0 40.0 31.0 41.0 64-65 36.37725249698484 38.0 35.0 40.0 31.0 41.0 66-67 36.1062038020047 37.0 35.0 39.0 31.0 41.0 68-69 35.82837527366935 37.0 35.0 39.0 31.0 41.0 70-71 35.56053290414394 36.5 34.0 39.0 30.0 40.5 72-73 35.278822379571125 36.0 34.0 38.0 30.0 40.0 74-75 34.984401684429244 35.5 34.0 38.0 30.0 39.5 76-77 33.83292546051226 34.5 32.5 37.0 28.5 39.0 78-79 34.442271856121096 35.0 34.0 37.0 29.5 39.0 80-81 34.39942078885744 35.0 34.0 37.0 30.0 38.5 82-83 34.18567578981819 35.0 34.0 37.0 30.0 38.0 84-85 34.047895700638534 35.0 34.0 36.0 30.0 38.0 86-87 33.87504998436046 35.0 34.0 36.0 29.0 38.0 88-89 33.80242519633805 35.0 34.0 36.0 29.5 38.0 90-91 33.65823122942663 35.0 33.5 35.0 29.0 37.5 92-93 33.58950691121393 35.0 33.0 35.0 29.0 37.0 94-95 33.57893371849494 35.0 33.0 35.0 29.0 37.0 96-97 33.6141124247515 35.0 33.0 35.0 29.5 37.0 98-99 33.67273113642317 35.0 33.0 35.0 30.0 37.0 100 32.56417779309827 34.0 31.0 35.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 7.0 17 17.0 18 25.0 19 28.0 20 98.0 21 257.0 22 932.0 23 2444.0 24 5638.0 25 11638.0 26 20040.0 27 31295.0 28 44177.0 29 60249.0 30 78565.0 31 97062.0 32 121987.0 33 156804.0 34 212257.0 35 297961.0 36 477948.0 37 1050799.0 38 893897.0 39 563155.0 40 26779.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.808750521477656 20.03617664738192 12.857779411520436 25.297293419619983 2 15.339688078725855 20.95701050129018 40.05564675145599 23.647654668527977 3 17.83548676824919 26.579508582083893 30.715966857491985 24.869037792174932 4 12.437540036123687 17.981464403146706 37.867691398850425 31.713304161879186 5 12.923907472711644 38.06622001939788 35.86225623552471 13.147616272365765 6 30.095297108058837 37.72440992079799 18.411862512370426 13.768430458772754 7 26.579965965834397 32.213778276245826 23.042102655690417 18.16415310222936 8 25.308294702461037 35.48496278701733 21.401611579608485 17.805130930913148 9 26.183943856385355 15.62846573509633 20.580391091994073 37.607199316524245 10-11 24.58189708817468 26.180645878815934 28.91612569001755 20.321331342991833 12-13 25.336471948774946 23.60076079768689 28.582343879880433 22.48042337365773 14-15 22.56336630588718 24.802548638549123 25.76280174990208 26.871283305661613 16-17 22.45481881667223 28.03013579451309 26.563620532224746 22.95142485658993 18-19 22.548536262965932 27.151648544231076 27.963312509523817 22.336502683279175 20-21 23.18406556502505 26.46312328445262 27.619560502098977 22.733250648423343 22-23 22.932998977308774 26.85396944446618 27.448298112987214 22.76473346523783 24-25 22.905361382379066 27.08391606960156 27.593697670383456 22.417024877635917 26-27 22.89878117237774 27.22123443940916 27.534831390292265 22.345152997920835 28-29 22.520281020552382 27.19262503083111 27.636303623519836 22.650790325096676 30-31 23.401474038599055 26.986917834958703 27.335943871733328 22.27566425470892 32-33 22.30160109239855 27.643547375366005 27.48348542654145 22.571366105694 34-35 22.72365092620248 27.401074016957523 27.710929737835023 22.16434531900498 36-37 22.490102834265386 27.374018325410855 27.60288951565891 22.53298932466485 38-39 22.432407206521994 26.89818099314329 27.95677357760853 22.71263822272619 40-41 22.56350992259312 26.67982074407891 28.19411418268506 22.56255515064291 42-43 22.872063559685763 26.639380172252093 27.822203287986547 22.6663529800756 44-45 22.47347802841029 27.292555020211452 27.560270056898474 22.673696894479782 46-47 23.05490355336863 26.670177285371526 27.098588885814223 23.176330275445622 48-49 22.917601826149514 26.57369136525105 27.116080540290426 23.392626268309012 50-51 22.346461696955693 26.720448628165823 27.57782474085417 23.355264934024316 52-53 22.577915268198023 26.942328207006483 27.690117141509564 22.789639383285934 54-55 22.751982054408813 26.816704532097212 27.137682924307583 23.29363048918639 56-57 23.084809350078192 27.175947697239135 26.762986662051908 22.97625629063077 58-59 22.480107440525785 27.513050719740047 27.555405648021093 22.45143619171308 60-61 22.93201257883643 28.14055368342717 26.346270265352327 22.581163472384063 62-63 22.625443261424625 28.359233379412487 26.463577063118056 22.551746296044836 64-65 22.524485632170453 28.043033023675175 26.571848361806566 22.86063298234781 66-67 22.685088927884646 27.86605727324783 26.457050608546357 22.991803190321168 68-69 22.775239618821654 27.57660136501358 26.731683470668294 22.916475545496475 70-71 22.878517430995377 26.937179040821658 26.917915090137367 23.2663884380456 72-73 22.933314069488787 27.157367550086402 26.7163166227617 23.193001757663115 74-75 22.619945715529468 27.34699653980726 26.825876203830134 23.207181540833137 76-77 22.852343501371276 27.307518204978532 26.74168438520454 23.098453908445652 78-79 22.823754796473356 27.323473462603953 26.61936134050591 23.233410400416783 80-81 22.83121773881431 27.264199270304708 26.673259146195626 23.231323844685356 82-83 23.078609494794158 27.101647870009277 26.92845629639914 22.891286338797425 84-85 23.120693043783255 27.15688512207332 26.52419389560424 23.198227938539183 86-87 22.746143873095768 27.386494132761936 26.79890868345367 23.068453310688625 88-89 22.974685340696983 27.0798212467761 26.767682803405062 23.177810609121853 90-91 22.939388817762495 27.14440355550237 26.851458940022194 23.064748686712942 92-93 23.059317036283943 27.257182095687032 26.721490303715733 22.96201056431329 94-95 22.73857173706728 27.269795216811684 26.814433712608682 23.17719933351236 96-97 22.7664505339791 27.31695068486238 26.992905511373277 22.92369326978525 98-99 23.951561245844577 29.25553052638926 27.061467054374834 19.73144117339133 100 31.099407641438404 41.26449308699027 27.636099271571325 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 780.0 1 786.0 2 1237.5 3 1811.5 4 2505.0 5 4156.5 6 5436.0 7 6066.5 8 6216.0 9 5710.0 10 5054.5 11 4433.0 12 4797.5 13 6487.0 14 9968.5 15 14572.0 16 18019.5 17 19669.5 18 20056.5 19 19276.5 20 17842.0 21 16863.0 22 17024.5 23 18750.0 24 22325.5 25 27875.5 26 36210.0 27 44798.5 28 51339.0 29 59348.0 30 67114.0 31 73898.5 32 83761.5 33 95321.5 34 105032.5 35 115170.5 36 127798.0 37 137077.5 38 141326.5 39 142967.5 40 146599.0 41 150413.0 42 152493.0 43 158020.0 44 167154.0 45 178248.0 46 188092.0 47 196794.5 48 198971.5 49 198256.0 50 198742.0 51 195799.5 52 189024.5 53 179884.0 54 171034.5 55 161321.5 56 151842.5 57 142409.0 58 131320.5 59 115485.0 60 96449.0 61 77729.5 62 61244.0 63 48135.0 64 37317.5 65 28237.5 66 20592.0 67 15294.5 68 11769.5 69 8770.0 70 6497.0 71 4681.5 72 3203.5 73 2157.0 74 1428.5 75 922.0 76 613.0 77 432.5 78 311.5 79 222.0 80 150.5 81 85.5 82 53.5 83 31.0 84 15.5 85 8.5 86 5.5 87 3.5 88 1.5 89 1.0 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0015406610543273196 18-19 4.814565794772874E-5 20-21 0.0 22-23 0.005994934641368684 24-25 0.00701943480426011 26-27 0.018282684996563867 28-29 0.013982045607022073 30-31 0.001739362349762577 32-33 0.0052259920230263756 34-35 0.02939577066521459 36-37 0.004677637711925533 38-39 0.0027304960665963025 40-41 0.006331244692557773 42-43 0.007006589245762922 44-45 0.007556317777978363 46-47 0.005015541631352714 48-49 0.0010240930525527315 50-51 0.0022002209129782934 52-53 9.307069513133508E-4 54-55 0.004954109954597039 56-57 0.0012823837117539626 58-59 0.0010889511151217625 60-61 8.310781226557582E-4 62-63 0.0014098093047414113 64-65 3.0209969864044563E-4 66-67 0.004866532272347163 68-69 0.003518600200308883 70-71 0.0016799674758296679 72-73 0.0012039757883722947 74-75 7.770452243627156E-4 76-77 6.048966382869327E-4 78-79 7.688992882042989E-4 80-81 0.0011828055556376948 82-83 0.006056025674715632 84-85 8.106510176192295E-4 86-87 7.333125561442426E-5 88-89 4.294779471476969E-4 90-91 4.382526751514925E-4 92-93 0.002297298902144217 94-95 0.003545869002849843 96-97 8.20574595051566E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 91.0 20-21 324.0 22-23 663.0 24-25 1080.0 26-27 2499.0 28-29 6409.0 30-31 14998.0 32-33 19462.0 34-35 26508.0 36-37 40983.0 38-39 49203.0 40-41 47098.0 42-43 52797.0 44-45 58584.0 46-47 59620.0 48-49 56337.0 50-51 52115.0 52-53 49152.0 54-55 53663.0 56-57 57982.0 58-59 59592.0 60-61 61422.0 62-63 58341.0 64-65 61216.0 66-67 65646.0 68-69 59452.0 70-71 53321.0 72-73 49275.0 74-75 48532.0 76-77 48586.0 78-79 51544.0 80-81 51788.0 82-83 48357.0 84-85 47937.0 86-87 49015.0 88-89 52509.0 90-91 55586.0 92-93 57032.0 94-95 65238.0 96-97 136028.0 98-99 780754.0 100-101 1543322.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.50239281002315 #Duplication Level Percentage of deduplicated Percentage of total 1 90.43272312541008 77.32214215548876 2 6.518148880077766 11.146346518772432 3 1.673229087588119 4.291952721243479 4 0.6287555901356487 2.1504042979710465 5 0.2874396827943053 1.2288390333733572 6 0.15068765059604736 0.7730492815729657 7 0.09524457546519055 0.5700547373114031 8 0.05199714699520387 0.3556704389907549 9 0.03769631953254307 0.2900812968147281 >10 0.12128351485925125 1.522458656325788 >50 0.0015501510702079198 0.08684032544832535 >100 0.0011999898715218654 0.228498328315989 >500 4.42856041994214E-5 0.033662208370923555 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 2.4072828973864372E-5 0.0 12-13 0.0 0.0 0.0 2.4072828973864372E-5 0.0 14-15 0.0 2.4072828973864372E-5 0.0 2.4072828973864372E-5 0.0 16-17 0.0 2.4072828973864372E-5 0.0 2.4072828973864372E-5 0.0 18-19 0.0 2.4072828973864372E-5 0.0 2.4072828973864372E-5 0.0 20-21 0.0 2.4072828973864372E-5 0.0 2.4072828973864372E-5 0.0 22-23 0.0 2.4072828973864372E-5 0.0 4.8145657947728744E-5 0.0 24-25 0.0 3.6109243460796556E-5 0.0 7.221848692159311E-5 0.0 26-27 0.0 4.8145657947728744E-5 0.0 1.6850980281705059E-4 0.0 28-29 0.0 7.221848692159311E-5 0.0 9.027310865199139E-4 0.0 30-31 0.0 7.221848692159311E-5 0.0 0.002852630233402928 0.0 32-33 0.0 7.221848692159311E-5 0.0 0.006102462144874618 0.0 34-35 0.0 8.425490140852529E-5 0.0 0.01079666379477817 0.0 36-37 0.0 9.629131589545749E-5 0.0 0.01878884301410114 0.0 38-39 0.0 1.0832773038238967E-4 0.0 0.02940496059157533 0.0 40-41 0.0 1.2036414486932185E-4 0.0 0.040225697215327365 0.0 42-43 0.0 1.4443697384318622E-4 0.0 0.051010324595618606 0.0 44-45 0.0 1.4443697384318622E-4 0.0 0.06326339454331556 0.0 46-47 0.0 1.4443697384318622E-4 0.0 0.07574515636626425 0.0 48-49 0.0 1.4443697384318622E-4 0.0 0.08786582575460494 0.0 50-51 0.0 1.4443697384318622E-4 0.0 0.09950503856346837 0.0 52-53 0.0 1.4443697384318622E-4 0.0 0.11131276117514885 0.0 54-55 0.0 1.4443697384318622E-4 0.0 0.12256680872043045 0.0 56-57 0.0 1.4443697384318622E-4 0.0 0.133291254028287 0.0 58-59 0.0 1.4443697384318622E-4 0.0 0.14424439121139532 0.0 60-61 0.0 1.4443697384318622E-4 0.0 0.1544994163542615 0.0 62-63 0.0 1.4443697384318622E-4 0.0 0.16446556754944136 0.0 64-65 0.0 1.4443697384318622E-4 0.0 0.17350491482912744 0.0 66-67 0.0 1.6850980281705059E-4 0.0 0.18217113325971862 0.0 68-69 0.0 1.6850980281705059E-4 0.0 0.19090957017723137 0.0 70-71 0.0 1.6850980281705059E-4 0.0 0.19916655051526688 0.0 72-73 0.0 1.6850980281705059E-4 0.0 0.20500421154142898 0.0 74-75 0.0 1.6850980281705059E-4 0.0 0.2107335448372087 0.0 76-77 0.0 1.6850980281705059E-4 0.0 0.21560829270441623 0.0 78-79 0.0 1.6850980281705059E-4 0.0 0.2187738697144794 0.0 80-81 0.0 1.6850980281705059E-4 0.0 0.21955623665613 0.0 82-83 0.0 1.6850980281705059E-4 0.0 0.22007380247906808 0.0 84-85 0.0 1.6850980281705059E-4 0.0 0.22039878567021523 0.0 86-87 0.0 1.6850980281705059E-4 0.0 0.22050711340059764 0.0 88 0.0 1.6850980281705059E-4 0.0 0.22050711340059764 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 5525 0.0 45.411648 1 TATACAC 6240 0.0 40.65217 3 GGTATCA 5005 0.0 39.850773 1 TTATACA 6910 0.0 36.309605 2 GTATCAA 8450 0.0 32.36172 1 TACACAT 8665 0.0 29.594887 5 ATACACA 9640 0.0 27.586876 4 ACACATC 9415 0.0 26.56483 6 CGTCGAA 160 0.0094026895 26.517487 94 ACATCTC 10075 0.0 25.020998 8 TCAACGC 10690 0.0 24.91424 4 CAACGCA 10705 0.0 24.842361 5 ATCAACG 10780 0.0 24.706236 3 TATCAAC 11080 0.0 24.287312 2 CACATCT 10315 0.0 24.247007 7 AACGCAG 11355 0.0 23.69911 6 TACATGG 13395 0.0 22.098825 2 GTACATG 13715 0.0 22.044884 1 ACATGGG 13450 0.0 21.537687 3 ACGCAGA 12440 0.0 21.473047 7 >>END_MODULE