##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139872_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7007173 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.722772364832437 31.0 31.0 34.0 30.0 34.0 2 31.90242841157197 31.0 31.0 34.0 30.0 34.0 3 31.92566774075651 31.0 31.0 34.0 30.0 34.0 4 35.66136300616525 37.0 35.0 37.0 33.0 37.0 5 35.472464715799084 37.0 35.0 37.0 33.0 37.0 6 35.470171351556466 37.0 35.0 37.0 33.0 37.0 7 35.34818906283604 37.0 35.0 37.0 32.0 37.0 8 35.317627665251024 37.0 35.0 37.0 32.0 37.0 9 36.86097132181552 39.0 37.0 39.0 33.0 39.0 10-11 36.707571156013984 39.0 35.0 39.0 32.0 39.0 12-13 36.66587638124533 39.0 35.0 39.0 32.0 39.0 14-15 37.75554742261965 40.0 37.0 41.0 32.0 41.0 16-17 37.76932380576304 40.0 37.0 41.0 32.0 41.0 18-19 37.77011592264098 40.0 37.0 41.0 32.0 41.0 20-21 37.7490015532905 40.0 37.0 41.0 32.0 41.0 22-23 37.65944359132162 39.0 37.0 41.0 32.0 41.0 24-25 37.54148030418668 39.0 36.0 41.0 32.0 41.0 26-27 37.36103225361215 39.0 36.0 41.0 31.5 41.0 28-29 37.217378275918406 39.0 36.0 40.5 31.0 41.0 30-31 37.06566113277073 39.0 36.0 40.0 31.0 41.0 32-33 37.21607706249715 39.0 36.0 40.0 31.0 41.0 34-35 37.18531674706874 39.0 36.0 41.0 31.0 41.0 36-37 37.07296423938921 39.0 35.5 40.0 31.0 41.0 38-39 36.88375441556001 39.0 35.0 40.0 30.0 41.0 40-41 36.88379202592834 39.0 35.0 40.0 30.0 41.0 42-43 36.76729733339505 39.0 35.0 40.0 30.0 41.0 44-45 36.82454048580423 38.5 35.0 40.0 30.5 41.0 46-47 36.973859236417184 39.0 35.0 40.0 31.0 41.0 48-49 36.91207419412081 39.0 35.0 40.0 30.5 41.0 50-51 36.782046066397086 39.0 35.0 40.0 30.0 41.0 52-53 36.66286710390453 39.0 35.0 40.0 30.0 41.0 54-55 36.52817065378491 38.0 35.0 40.0 30.0 41.0 56-57 36.35353570500951 38.0 35.0 40.0 29.5 41.0 58-59 36.21411023181365 38.0 34.5 40.0 29.0 41.0 60-61 35.997069035375134 38.0 34.0 40.0 29.0 41.0 62-63 35.75173870680469 37.5 34.0 40.0 29.0 41.0 64-65 35.540874137125506 37.0 34.0 40.0 28.5 41.0 66-67 35.27137887777992 36.5 34.0 39.0 28.0 41.0 68-69 34.951765815240826 36.0 33.0 39.0 28.0 40.5 70-71 34.614117325043935 36.0 33.0 39.0 28.0 40.0 72-73 34.32966999564887 35.0 33.0 38.0 28.0 40.0 74-75 33.977612034447596 35.0 32.0 37.5 27.5 39.5 76-77 32.90436605167943 34.0 31.0 36.0 26.0 39.0 78-79 33.26130226387944 35.0 32.0 36.0 26.5 39.0 80-81 33.150812775812895 35.0 32.0 36.0 27.0 38.5 82-83 32.716452944723414 34.0 31.5 35.5 26.0 37.0 84-85 32.47407973375779 34.0 31.0 35.0 26.0 37.0 86-87 32.38569792023442 34.0 31.0 35.0 26.0 36.0 88-89 32.22359325387077 34.0 31.0 35.0 26.0 36.0 90-91 32.09025002972367 34.0 31.0 35.0 26.0 36.0 92-93 32.00386379195025 34.0 31.0 35.0 26.0 35.0 94-95 31.9623438236017 34.0 31.0 35.0 26.0 35.0 96-97 31.878643869165373 34.0 31.0 35.0 26.0 35.0 98-99 32.095681355013625 34.0 31.0 35.0 26.5 35.0 100-101 31.212241177404593 33.0 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 2.0 19 22.0 20 100.0 21 580.0 22 2295.0 23 7286.0 24 17779.0 25 36265.0 26 62654.0 27 96515.0 28 135428.0 29 177018.0 30 221777.0 31 272375.0 32 331157.0 33 408811.0 34 522003.0 35 674033.0 36 935925.0 37 1266846.0 38 1195573.0 39 623773.0 40 18954.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.193762306139725 22.36565302440799 14.421379349418089 25.0192053200342 2 14.32209796195755 22.73556111280226 40.08169181199494 22.860649113245245 3 16.737408472348044 27.870558907359488 32.14433725902547 23.247695361267 4 11.653460197637507 19.45559492474282 38.97167073963648 29.919274137983198 5 11.868566681598985 39.23846321476579 36.514211936825305 12.378758166809925 6 28.73963579891634 39.45975074398763 18.769281135202455 13.03133232189358 7 25.06879735950575 33.489739728132875 23.82699842004757 17.614464492313804 8 24.776425528526268 36.487353744512944 21.615664405602658 17.12055632135813 9 25.673078144352935 15.576281618849713 21.208067789963227 37.54257244683412 10-11 23.762321837922368 26.98688900645096 29.602765623169287 19.648023532457383 12-13 24.59673822809855 24.614334482679393 29.330144981435453 21.458782307786606 14-15 21.793617768535185 25.89660623478256 26.83042790580452 25.479348090877735 16-17 21.347190137477234 28.825029245541383 27.717209422337586 22.110571194643796 18-19 21.206690983529995 28.0183383314984 29.437861451820492 21.33710923315111 20-21 22.071670586757705 27.298676683831335 29.06318149640912 21.566471233001838 22-23 21.710860005296205 27.809219537716906 28.749046219030223 21.730874237956662 24-25 21.519522026874743 27.96212611761218 29.159722143384943 21.358629712128135 26-27 21.62578916923076 28.0647442577671 28.99259030540727 21.31687626759487 28-29 21.397829799659345 27.926509745705776 29.16186236660983 21.51379808802505 30-31 21.793362295720268 27.9347067529651 28.889959463744734 21.381971487569896 32-33 21.551088625306893 27.903637820201375 28.934681042034207 21.610592512457526 34-35 21.392760124390477 28.350320372951355 29.26661278613415 20.990306716524014 36-37 21.753440133655285 28.113322874298202 28.775503753214853 21.35773323883166 38-39 21.325957318704795 27.978669323178202 29.014471000943086 21.680902357173913 40-41 21.48454456847702 27.808147986014063 29.108136574268944 21.59917087123997 42-43 21.772933578139206 27.85593975985409 28.760937660596962 21.610189001409747 44-45 21.425083433728048 28.458968662597574 28.516721141343666 21.599226762330716 46-47 21.876945923038864 28.043613765785942 27.843546807608142 22.235893503567052 48-49 21.829489087014668 28.057765697227214 27.896269135830636 22.216476079927475 50-51 21.61261824410946 28.06177027489301 28.07110939312446 22.25450208787307 52-53 21.66596095749873 28.1545817886159 28.251883946800355 21.92757330708502 54-55 21.655097213795337 28.209335360865538 27.863922035732536 22.27164538960659 56-57 22.023315927079828 28.3782770501598 27.458305257356585 22.140101765403784 58-59 21.64443312876864 28.623142769617367 28.1235034061467 21.608920695467297 60-61 22.007107241249095 28.91086198431661 27.433579346411825 21.64845142802247 62-63 21.818639283466837 28.960661696441537 27.369900058449154 21.85079896164247 64-65 21.719671502203603 28.75586364697771 27.51102262003291 22.013442230785778 66-67 21.85639460547162 28.570910847917215 27.459057248077386 22.113637298533778 68-69 21.916644702484454 28.30504369101343 27.62291520165331 22.15539640484881 70-71 21.937097318297592 28.009121842595718 27.69661209169098 22.357168747415702 72-73 21.9685613831646 28.11346476069168 27.71013117976499 22.207842676378732 74-75 21.91585633552465 28.149411740211217 27.68847317813786 22.246258746126273 76-77 21.948527352703522 28.121272525164915 27.640522613182505 22.28967750894906 78-79 21.839127367145423 28.106125312752635 27.6426621215179 22.41208519858404 80-81 21.832707725143404 27.93493645839606 27.890730484426605 22.341625332033928 82-83 22.033370496712426 27.919262048995357 27.919351054194262 22.12801640009795 84-85 22.200410721730567 27.987848116706143 27.59554832989548 22.21619283166781 86-87 21.873702525684024 28.080679936503365 27.783234495334742 22.262383042477868 88-89 22.027001762646588 27.914755042298147 27.66712440127656 22.391118793778713 90-91 22.01891540994988 27.79176232411417 27.907109770089477 22.282212495846473 92-93 22.028485995366925 27.76850839467608 27.9342936715304 22.26871193842659 94-95 21.625623311669663 27.825138883991773 28.178884599963116 22.370353204375448 96-97 21.601894822228786 27.810127821522094 28.198438038605605 22.389539317643518 98-99 21.618440880146224 28.537006680570126 28.277048929744204 21.567503509539446 100-101 24.232163584348893 36.31611557369296 29.639920080556532 9.811800761401607 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1525.0 1 1657.0 2 3127.5 3 4727.5 4 6541.5 5 10135.5 6 12699.0 7 14379.5 8 15083.5 9 14104.0 10 12520.0 11 11368.5 12 13021.5 13 18561.0 14 30480.5 15 45118.5 16 54498.0 17 56902.5 18 55073.5 19 51632.0 20 47594.0 21 44685.5 22 44002.0 23 46878.5 24 54192.0 25 65772.5 26 80323.0 27 94936.5 28 109878.5 29 126879.0 30 142908.5 31 158843.5 32 176987.0 33 194696.0 34 211621.0 35 227453.0 36 241523.5 37 256977.5 38 267707.0 39 273407.5 40 280971.5 41 285428.5 42 288120.5 43 295478.5 44 303446.5 45 312240.5 46 327977.0 47 343719.0 48 341761.5 49 329465.5 50 317851.0 51 304944.5 52 289944.5 53 270723.0 54 252073.0 55 233103.0 56 213916.0 57 191084.5 58 166936.5 59 141401.5 60 113624.5 61 90220.5 62 70561.5 63 53940.5 64 40400.5 65 30003.0 66 21804.0 67 16426.0 68 12608.5 69 9319.5 70 6959.5 71 4882.0 72 3393.0 73 2299.0 74 1519.5 75 1089.5 76 752.5 77 450.0 78 287.5 79 215.5 80 166.5 81 124.5 82 100.5 83 71.5 84 43.5 85 30.0 86 22.0 87 18.0 88 11.5 89 6.0 90 5.0 91 4.0 92 2.0 93 1.5 94 2.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0015127355925135572 3 1.4271090495410916E-5 4 1.4271090495410916E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.001741073040440132 18-19 0.001448515685284208 20-21 7.136087544380221E-6 22-23 0.0025338347233141703 24-25 1.3565944054046722E-4 26-27 0.0013145057062049742 28-29 5.363576083542488E-4 30-31 1.863666488567051E-4 32-33 9.141072443574931E-4 34-35 0.01664063927849547 36-37 0.03237257004125897 38-39 0.00773968142791805 40-41 0.004744067651901267 42-43 0.007417962680062891 44-45 0.005315071671430588 46-47 0.003112595923032481 48-49 0.0013403348810743997 50-51 1.2170860380027814E-4 52-53 1.3185673567883393E-4 54-55 0.004956117846101323 56-57 0.012489906264361049 58-59 0.01042434279335932 60-61 0.00863206933278088 62-63 0.0019416446380309304 64-65 0.0014461726258497185 66-67 0.001675513471928419 68-69 0.0 70-71 0.0 72-73 7.60793202993441E-4 74-75 8.981296450142578E-4 76-77 9.369102345263288E-5 78-79 9.9897052898784E-4 80-81 0.0027064149534099906 82-83 0.005251030987646616 84-85 0.01299266608370326 86-87 0.00851035789722212 88-89 0.07220975950294282 90-91 0.0 92-93 1.2662129066094541E-5 94-95 2.621496877338457E-4 96-97 0.007842373771372868 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 329.0 20-21 1177.0 22-23 2167.0 24-25 3515.0 26-27 5855.0 28-29 12392.0 30-31 26905.0 32-33 35904.0 34-35 50207.0 36-37 75798.0 38-39 89430.0 40-41 88429.0 42-43 97257.0 44-45 111578.0 46-47 112239.0 48-49 106711.0 50-51 97128.0 52-53 92947.0 54-55 101512.0 56-57 107653.0 58-59 111299.0 60-61 113846.0 62-63 107816.0 64-65 111372.0 66-67 118081.0 68-69 104105.0 70-71 102674.0 72-73 96018.0 74-75 96049.0 76-77 96359.0 78-79 103596.0 80-81 106943.0 82-83 100490.0 84-85 98845.0 86-87 104438.0 88-89 112993.0 90-91 122905.0 92-93 129363.0 94-95 160272.0 96-97 191893.0 98-99 520187.0 100-101 2978496.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.02196124167116 #Duplication Level Percentage of deduplicated Percentage of total 1 89.82986701667043 74.57851737802487 2 6.404557090619001 10.634377810948818 3 1.8284693490250852 4.55409334279033 4 0.7922178732112088 2.6308592625880056 5 0.42149463649564045 1.7496655687356668 6 0.2250069787343168 1.1208312400551586 7 0.15022288996862557 0.8730259264010944 8 0.091190734842526 0.6056666922956564 9 0.0597032630951629 0.44610137952191203 >10 0.1921255549837539 2.4623136040623907 >50 0.004576934534812427 0.24482796710339622 >100 5.368133441953584E-4 0.08319215867086469 >500 3.086447529392277E-5 0.016527668801797898 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 5.7084361981643666E-5 1.4271090495410916E-5 0.0 1.4271090495410916E-5 0.0 3 5.7084361981643666E-5 1.4271090495410916E-5 0.0 2.8542180990821833E-5 0.0 4 5.7084361981643666E-5 4.281327148623275E-5 0.0 7.135545247705459E-5 0.0 5 1.71253085944931E-4 4.281327148623275E-5 0.0 7.135545247705459E-5 0.0 6 2.4260853842198558E-4 4.281327148623275E-5 0.0 7.135545247705459E-5 0.0 7 4.281327148623275E-4 4.281327148623275E-5 0.0 8.56265429724655E-5 0.0 8 4.566748958531493E-4 4.281327148623275E-5 0.0 9.989763346787642E-5 0.0 9 4.566748958531493E-4 4.281327148623275E-5 0.0 2.7115071941280743E-4 0.0 10-11 4.566748958531493E-4 4.281327148623275E-5 0.0 2.925573551559238E-4 0.0 12-13 5.13759257834793E-4 4.281327148623275E-5 0.0 3.3537062664215655E-4 0.0 14-15 6.350635270457859E-4 4.281327148623275E-5 0.0 4.2099716961462204E-4 0.0 16-17 7.420967057613677E-4 4.281327148623275E-5 0.0 4.780815315962657E-4 0.0 18-19 9.775696989356478E-4 7.135545247705459E-5 0.0 4.8521707684397115E-4 0.0 20-21 0.0011416872396328734 7.135545247705459E-5 0.0 5.28030348330204E-4 0.0 22-23 0.0011773649658714006 7.135545247705459E-5 0.0 5.423014388256149E-4 0.0 24-25 0.001448515685284208 8.56265429724655E-5 0.0 5.92250255559553E-4 0.0 26-27 0.001462786775779619 8.56265429724655E-5 0.0 6.636057080366077E-4 0.0 28-29 0.001819564038164892 9.276208822017096E-5 0.0 0.0013985668685502699 0.0 30-31 0.0019694104883667064 9.989763346787642E-5 0.0 0.0032252664519628674 0.0 32-33 0.0019979526693575285 9.989763346787642E-5 0.0 0.006186517729760633 0.0 34-35 0.002240561207779514 1.1416872396328733E-4 0.0 0.010061118799264697 0.0 36-37 0.0024831697462014994 1.1416872396328733E-4 0.0 0.01659014270091519 0.0 38-39 0.002754320465614307 1.1416872396328733E-4 0.0 0.026073282335115744 0.0 40-41 0.0027757271013574233 1.1416872396328733E-4 0.0 0.036683838118453764 0.0 42-43 0.003039742275522525 1.3557535970640372E-4 0.0 0.04623833320513137 0.0 44-45 0.003382248447412387 1.4271090495410917E-4 0.0 0.0572484795223409 0.0 46-47 0.003838923343265537 1.4271090495410917E-4 0.0 0.0697999036130548 0.0 48-49 0.004010176429210467 1.4271090495410917E-4 0.0 0.08243695424674116 0.0 50-51 0.004010176429210467 1.4271090495410917E-4 0.0 0.09467441434655602 0.0 52-53 0.004017311974458173 1.569819954495201E-4 0.0 0.10567028957327013 0.0 54-55 0.0040672607911921115 1.569819954495201E-4 0.0 0.1173939904152502 0.0 56-57 0.004238513877137042 1.8552417644034192E-4 0.0 0.1294102486123862 0.0 58-59 0.004238513877137042 1.9265972168804738E-4 0.0 0.14129806699506348 0.0 60-61 0.004252784967632453 1.9979526693575283E-4 0.0 0.15237243321950236 0.0 62-63 0.0042884626938709805 1.9979526693575283E-4 0.0 0.16286168473362939 0.0 64-65 0.0043669536915957406 2.1406635743116375E-4 0.0 0.1737219846006371 0.0 66-67 0.004695188772990191 2.1406635743116375E-4 0.0 0.1847107242821035 0.0 68-69 0.004766544225467247 2.1406635743116375E-4 0.0 0.19588498814001026 0.0 70-71 0.0049092551304213555 2.2833744792657466E-4 0.0 0.20662398373780697 0.0 72-73 0.00504483049012776 2.568796289173965E-4 0.0 0.2150439271300994 0.0 74-75 0.005109050397357108 2.8542180990821835E-4 0.0 0.22332829516268543 0.0 76-77 0.005123321487852519 3.139639908990402E-4 0.0 0.23065650013207895 0.0 78-79 0.005151863668843341 3.42506171889862E-4 0.0 0.23764933447483028 0.0 80-81 0.005601403019448785 3.42506171889862E-4 0.0 0.24135981800363715 0.0 82-83 0.005658487381430428 3.42506171889862E-4 0.0 0.24437101809816883 0.0 84-85 0.005772656105393716 3.42506171889862E-4 0.0 0.24731799828547119 0.0 86-87 0.0058939603746047085 3.42506171889862E-4 0.0 0.24761055564062712 0.0 88-89 0.005929638100843236 3.42506171889862E-4 0.0 0.24768904663835187 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 8915 0.0 36.17009 1 GGTATCA 11960 0.0 35.309467 1 TATACAC 11190 0.0 31.385427 3 GTATCAA 19190 0.0 28.788391 1 TTATACA 12015 0.0 28.034197 2 TACACAT 14940 0.0 23.585571 5 ACACATC 14275 0.0 22.942522 6 ATCAACG 24520 0.0 22.102604 3 ATACACA 17010 0.0 22.085733 4 ACATCTC 14645 0.0 22.071085 8 AACGCAG 24635 0.0 22.015196 6 CAACGCA 24675 0.0 21.932274 5 TATCAAC 25140 0.0 21.681293 2 TCAACGC 25050 0.0 21.619455 4 CACATCT 15630 0.0 20.655312 7 TACATGG 25345 0.0 20.570887 2 CATCTCC 16115 0.0 20.130098 9 GTACATG 26475 0.0 20.103765 1 ACATGGG 25735 0.0 19.655157 3 ACGCAGA 27880 0.0 19.369202 7 >>END_MODULE