##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139871_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3497196 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.77362950203535 34.0 31.0 34.0 31.0 34.0 2 32.98635135119679 34.0 33.0 34.0 31.0 34.0 3 33.096168759200225 34.0 33.0 34.0 31.0 34.0 4 36.427187666919444 37.0 37.0 37.0 35.0 37.0 5 36.28324777907787 37.0 37.0 37.0 35.0 37.0 6 36.35386549681516 37.0 37.0 37.0 35.0 37.0 7 36.364098266153796 37.0 37.0 37.0 35.0 37.0 8 36.375815081568206 37.0 37.0 37.0 35.0 37.0 9 38.2783018166554 39.0 39.0 39.0 37.0 39.0 10-11 38.18330113611019 39.0 38.5 39.0 37.0 39.0 12-13 38.16912649448301 39.0 39.0 39.0 37.0 39.0 14-15 39.662770974231925 41.0 40.0 41.0 37.5 41.0 16-17 39.63708625424483 41.0 39.0 41.0 37.0 41.0 18-19 39.68688686593488 41.0 40.0 41.0 38.0 41.0 20-21 39.70392509368634 41.0 40.0 41.0 38.0 41.0 22-23 39.65384467412548 41.0 40.0 41.0 37.0 41.0 24-25 39.63760244792657 41.0 40.0 41.0 37.0 41.0 26-27 39.527278192367326 41.0 39.0 41.0 37.0 41.0 28-29 39.46021431457684 41.0 39.0 41.0 37.0 41.0 30-31 39.4012304520268 40.0 39.0 41.0 37.0 41.0 32-33 39.32568721445778 40.0 39.0 41.0 36.0 41.0 34-35 39.301518913841804 40.0 39.0 41.0 36.0 41.0 36-37 39.26146332148906 40.0 39.0 41.0 36.0 41.0 38-39 39.19432312070671 40.0 39.0 41.0 36.0 41.0 40-41 39.155534942357406 40.0 39.0 41.0 35.0 41.0 42-43 39.160363736749 40.0 39.0 41.0 35.0 41.0 44-45 39.11331480054011 40.0 39.0 41.0 35.0 41.0 46-47 39.02399839413066 40.0 39.0 41.0 35.0 41.0 48-49 39.034238143772185 40.0 39.0 41.0 35.0 41.0 50-51 38.9181614213731 40.0 38.5 41.0 35.0 41.0 52-53 38.78313083215518 40.0 38.0 41.0 35.0 41.0 54-55 38.60210299599339 40.0 38.0 41.0 35.0 41.0 56-57 38.4704946804798 40.0 38.0 41.0 35.0 41.0 58-59 38.345672193760734 40.0 37.0 41.0 34.0 41.0 60-61 38.13322601874421 40.0 37.0 41.0 34.0 41.0 62-63 38.00568099008139 39.0 36.5 41.0 34.0 41.0 64-65 37.777390958110914 39.0 36.0 41.0 34.0 41.0 66-67 37.564492712313736 39.0 35.5 40.5 34.0 41.0 68-69 37.32560079467823 38.5 35.0 40.0 34.0 41.0 70-71 36.88937035501586 37.5 35.0 40.0 33.0 41.0 72-73 36.62098134769982 37.0 35.0 39.0 33.0 41.0 74-75 36.251957674775326 36.5 35.0 39.0 33.0 41.0 76-77 34.4504152126716 34.5 33.0 37.5 30.0 39.0 78-79 35.406809591770994 35.0 34.5 37.5 32.0 39.0 80-81 35.307597273730636 35.0 35.0 37.0 32.0 39.0 82-83 35.0236405588701 35.0 35.0 37.0 32.0 39.0 84-85 34.767155475213485 35.0 34.0 36.0 32.0 37.5 86-87 34.561894868488835 35.0 34.0 36.0 32.0 37.0 88-89 34.382679295315214 35.0 34.0 36.0 32.0 37.0 90-91 34.302247611194716 35.0 34.0 35.0 32.0 36.5 92-93 34.176254295548745 35.0 34.0 35.0 32.0 36.0 94-95 34.025447885271355 35.0 34.0 35.0 32.0 36.0 96-97 34.043196986747844 35.0 34.0 35.0 32.0 36.0 98-99 34.0557904407579 35.0 34.0 35.0 32.0 36.0 100-101 32.837937262158206 34.5 32.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 3.0 19 12.0 20 20.0 21 72.0 22 195.0 23 524.0 24 1284.0 25 2635.0 26 4855.0 27 8076.0 28 12133.0 29 17238.0 30 23589.0 31 31868.0 32 43152.0 33 61622.0 34 97113.0 35 163831.0 36 339494.0 37 817174.0 38 1198514.0 39 656330.0 40 17460.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.535046934744294 20.36368564987493 13.02835185674466 25.072915558636115 2 14.570282162640702 21.322272078949265 41.179543694661795 22.92790206374824 3 17.629957640131558 26.730323706714387 31.109826265634748 24.529892387519308 4 11.911514253133081 18.389875774763553 38.97185059115932 30.726759380944046 5 12.579878279627449 38.1405274396974 36.39072559845087 12.888868682224272 6 29.19469046033415 38.55152312851194 19.054654654311175 13.199131756842734 7 25.565853329353 32.8180633856381 23.806014875917736 17.81006840909117 8 24.285313148019156 36.45574912015226 21.98529907960549 17.273638652223095 9 25.447258573587856 16.022931527390245 21.188730164812135 37.34107973420977 10-11 23.722793459764617 26.651922418700995 29.648991774236578 19.97629234729781 12-13 24.691504880291355 24.19917942421298 29.279489165337143 21.829826530158527 14-15 21.858955002807964 25.64578879765389 26.519874779680634 25.975381419857506 16-17 21.76395031905561 28.81821607939618 27.349453676602625 22.068379924945585 18-19 21.78296555297444 27.955439157542212 28.712474222205447 21.5491210672779 20-21 22.38009908024287 27.419354146885194 28.347089394547915 21.85345737832402 22-23 21.954969423037955 27.650090364585605 28.313536155915266 22.08140405646117 24-25 21.937965326910366 27.635954441029902 28.473741320965278 21.95233891109445 26-27 22.00447378002937 27.832448568340318 28.413181555779538 21.749896095850772 28-29 21.73094542675781 27.743814303757215 28.42378378316462 22.101456486320355 30-31 21.95222867934847 27.761002512248844 28.47338739261682 21.813381415785862 32-33 21.41790311882872 27.645264589098716 28.882350349184517 22.05448194288805 34-35 21.521603809480254 27.813246662312274 28.566615321892368 22.098534206315104 36-37 21.708202327987287 27.860760990127098 28.606859182147637 21.824177499737978 38-39 21.662084363283714 27.733260747055382 28.594029719720933 22.01062516993997 40-41 21.7873488266479 27.591299995843006 28.676945513450402 21.94440566405869 42-43 21.96932498139442 27.631148620685188 28.56263336260189 21.836893035318504 44-45 21.69650923221922 28.04641244799642 28.26607812248992 21.99100019729444 46-47 22.206262528148855 27.569685999305843 27.72122903010135 22.502822442443954 48-49 22.00149819519851 27.637832464156787 28.007600124372534 22.353069216272168 50-51 21.79012359460612 27.95006332664717 27.96876948558222 22.291043593164485 52-53 21.86560419475026 28.09426234473423 28.136309999281167 21.90382346123434 54-55 21.88968626147175 28.05576140569371 27.710129611104485 22.344422721730066 56-57 22.305684791764435 28.24505346297904 27.312441536165665 22.13682020909086 58-59 21.7562722622095 28.47944897553515 27.964586166731042 21.799692595524313 60-61 22.289910698240586 28.801529504388878 27.145493263963942 21.76306653340659 62-63 21.841550120421964 28.964712902911348 27.219863075928007 21.97387390073868 64-65 21.89383863303462 28.651075211919803 27.367688281520476 22.087397873525106 66-67 22.028111544240865 28.50933413665775 27.251530134586904 22.21102418451448 68-69 22.093134691815326 28.17830590225862 27.475865011500193 22.252694394425856 70-71 22.191108693657092 27.834688674451762 27.51900200932212 22.45520062256902 72-73 22.20156450941844 27.994765787344683 27.551981531474745 22.25168817176213 74-75 22.185135117238012 27.949923579023782 27.50024616326008 22.364695140478126 76-77 22.063476365539266 27.97475865602731 27.4934529339344 22.468312044499022 78-79 22.181980159686475 27.965103646082305 27.457125248398988 22.395790945832232 80-81 22.12133446207824 27.95755534069023 27.52436839522277 22.39674180200876 82-83 22.223708971821004 27.886819659310312 27.62040635106842 22.269065017800262 84-85 22.467998758268738 27.809303311875855 27.416260644518047 22.30643728533736 86-87 22.106266515666288 27.903716287068498 27.546495532905503 22.443521664359718 88-89 22.272424878446017 27.865782085310965 27.476034188441893 22.385758847801124 90-91 22.360346167080365 27.878980023328836 27.502645594246992 22.2580282153438 92-93 22.36516658711049 27.843407037783575 27.486163497513953 22.305262877591986 94-95 22.20380633610437 27.896120674315387 27.529852201136094 22.370220788444144 96-97 22.181037668280087 27.867068425158415 27.636528697143742 22.315365209417752 98-99 22.455429430277263 28.43467708356811 27.716636871892753 21.393256614261873 100-101 26.579292016727667 35.537964512620704 28.241910838005786 9.640832632645848 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 550.0 1 559.0 2 978.0 3 1447.0 4 2192.5 5 3991.0 6 5336.0 7 5852.0 8 5744.5 9 5042.0 10 4182.0 11 3465.5 12 3844.5 13 5540.5 14 8994.5 15 13315.5 16 16672.5 17 18539.5 18 18820.5 19 17905.5 20 16668.5 21 15870.5 22 16158.0 23 18220.5 24 22140.0 25 27808.0 26 35028.0 27 42698.0 28 50189.0 29 58573.5 30 66871.5 31 74086.0 32 81958.5 33 89928.5 34 97827.0 35 106473.0 36 115947.0 37 124450.5 38 130186.0 39 134798.5 40 139922.0 41 142881.0 42 144137.5 43 146967.0 44 149816.0 45 152794.0 46 156954.0 47 160883.5 48 168335.5 49 168849.5 50 160495.0 51 154616.5 52 147154.5 53 137146.0 54 125029.0 55 112505.5 56 102731.5 57 93238.5 58 81798.0 59 70317.5 60 59434.0 61 48315.0 62 37770.0 63 29454.5 64 22611.5 65 16794.0 66 12405.5 67 9421.0 68 7135.0 69 5235.5 70 3849.0 71 2792.0 72 2009.5 73 1432.0 74 1043.0 75 752.5 76 513.5 77 318.0 78 198.5 79 137.5 80 99.0 81 63.0 82 43.0 83 32.5 84 25.0 85 20.5 86 17.5 87 15.5 88 10.0 89 5.0 90 2.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001830037550082981 3 5.146980609608383E-4 4 0.0 5 0.0 6 5.43292397680885E-4 7 0.0 8 0.0 9 5.7188673440093155E-5 10-11 3.717263773606055E-4 12-13 5.00400892600815E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.722772586030798E-5 28-29 0.0 30-31 7.173339737691051E-5 32-33 2.015989678132848E-4 34-35 4.341846923265961E-5 36-37 8.454629324998429E-4 38-39 1.7675198779704276E-4 40-41 1.0429719336252661E-4 42-43 0.0 44-45 0.0 46-47 1.5501535117022636E-5 48-49 3.145485465576672E-5 50-51 1.4352531013028748E-4 52-53 0.0 54-55 7.53004775523547E-4 56-57 6.649516455475253E-5 58-59 0.0 60-61 0.0010469834689892077 62-63 0.0 64-65 0.0 66-67 3.6077430825134133E-5 68-69 0.0 70-71 0.0 72-73 5.678659427511628E-5 74-75 0.0 76-77 3.8935852015728524E-5 78-79 3.950678153658466E-5 80-81 0.0 82-83 0.0 84-85 2.0667959516427616E-5 86-87 5.872202419850729E-4 88-89 6.388607494390269E-5 90-91 0.0 92-93 2.2007235979189956E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 77.0 20-21 312.0 22-23 635.0 24-25 1002.0 26-27 2100.0 28-29 5041.0 30-31 12118.0 32-33 16189.0 34-35 22014.0 36-37 33228.0 38-39 39377.0 40-41 37750.0 42-43 41451.0 44-45 48155.0 46-47 47368.0 48-49 44566.0 50-51 40748.0 52-53 39476.0 54-55 45970.0 56-57 47082.0 58-59 47450.0 60-61 46916.0 62-63 46086.0 64-65 46954.0 66-67 50557.0 68-69 43769.0 70-71 39997.0 72-73 36746.0 74-75 36681.0 76-77 36677.0 78-79 37975.0 80-81 38594.0 82-83 36136.0 84-85 34974.0 86-87 35918.0 88-89 37132.0 90-91 38695.0 92-93 37674.0 94-95 39850.0 96-97 59293.0 98-99 259049.0 100-101 1885414.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.10023080542794 #Duplication Level Percentage of deduplicated Percentage of total 1 90.5951184456604 78.90855726462102 2 6.75672298216476 11.770242624697799 3 1.5895676247529869 4.153551209904631 4 0.5557438634439062 1.9362167509865784 5 0.22328974962116294 0.9724294364244754 6 0.11169985732647246 0.5837450012441473 7 0.05497969851504482 0.33521211011912727 8 0.03287942206256781 0.22910442003189888 9 0.019872656619878252 0.15578216804775702 >10 0.05868638041416076 0.7287881724693963 >50 6.915081763889798E-4 0.043294568708352035 >100 7.011446567702263E-4 0.16145222636436246 >500 4.66665855495121E-5 0.021624046380443157 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.8594336720046574E-5 0.0 2.8594336720046574E-5 0.0 3 0.0 2.8594336720046574E-5 0.0 2.8594336720046574E-5 0.0 4 0.0 2.8594336720046574E-5 0.0 2.8594336720046574E-5 0.0 5 0.0 5.718867344009315E-5 0.0 5.718867344009315E-5 0.0 6 0.0 5.718867344009315E-5 0.0 5.718867344009315E-5 0.0 7 0.0 5.718867344009315E-5 0.0 5.718867344009315E-5 0.0 8 0.0 5.718867344009315E-5 0.0 8.578301016013973E-5 0.0 9 0.0 1.7156602032027945E-4 0.0 8.578301016013973E-5 0.0 10-11 0.0 1.7156602032027945E-4 0.0 1.7156602032027945E-4 0.0 12-13 0.0 1.7156602032027945E-4 0.0 2.0016035704032602E-4 0.0 14-15 0.0 2.430518621203959E-4 0.0 2.287546937603726E-4 0.0 16-17 0.0 2.5734903048041917E-4 0.0 2.8594336720046576E-4 0.0 18-19 0.0 2.8594336720046576E-4 0.0 3.431320406405589E-4 0.0 20-21 0.0 3.145377039205123E-4 0.0 3.431320406405589E-4 0.0 22-23 0.0 3.145377039205123E-4 0.0 4.432122191607219E-4 0.0 24-25 0.0 3.145377039205123E-4 0.0 6.862640812811178E-4 2.8594336720046574E-5 26-27 0.0 3.145377039205123E-4 0.0 7.148584180011644E-4 2.8594336720046574E-5 28-29 0.0 3.145377039205123E-4 0.0 0.0012009621422419561 2.8594336720046574E-5 30-31 0.0 3.431320406405589E-4 0.0 0.0029595138505248203 2.8594336720046574E-5 32-33 2.8594336720046574E-5 3.431320406405589E-4 0.0 0.006762560634291015 2.8594336720046574E-5 34-35 2.8594336720046574E-5 3.860235457206287E-4 0.0 0.012023918590779585 2.8594336720046574E-5 36-37 2.8594336720046574E-5 4.289150508006986E-4 0.0 0.018500535857870135 2.8594336720046574E-5 38-39 2.8594336720046574E-5 4.289150508006986E-4 0.0 0.027479157587964757 2.8594336720046574E-5 40-41 2.8594336720046574E-5 4.861037242407918E-4 0.0 0.03785890181734167 2.8594336720046574E-5 42-43 2.8594336720046574E-5 5.004008926008151E-4 0.0 0.04683752354743629 2.8594336720046574E-5 44-45 2.8594336720046574E-5 5.575895660409082E-4 0.0 0.05763188565925387 2.8594336720046574E-5 46-47 2.8594336720046574E-5 6.290754078410246E-4 0.0 0.07002753062739406 2.8594336720046574E-5 48-49 2.8594336720046574E-5 6.290754078410246E-4 0.0 0.08139377947361258 2.8594336720046574E-5 50-51 2.8594336720046574E-5 7.00561249641141E-4 0.0 0.09280291982491115 2.8594336720046574E-5 52-53 2.8594336720046574E-5 7.148584180011644E-4 0.0 0.10268226316168724 2.8594336720046574E-5 54-55 2.8594336720046574E-5 7.43452754721211E-4 0.0 0.11260449800354341 2.8594336720046574E-5 56-57 2.8594336720046574E-5 7.720470914412576E-4 0.0 0.12226938381491916 2.8594336720046574E-5 58-59 2.8594336720046574E-5 7.720470914412576E-4 0.0 0.13143386873369406 2.8594336720046574E-5 60-61 2.8594336720046574E-5 7.720470914412576E-4 0.0 0.14036959895870865 2.8594336720046574E-5 62-63 2.8594336720046574E-5 8.006414281613041E-4 0.0 0.14884781979620243 2.8594336720046574E-5 64-65 2.8594336720046574E-5 9.007216066814672E-4 0.0 0.15683993690945547 2.8594336720046574E-5 66-67 2.8594336720046574E-5 9.150187750414904E-4 0.0 0.16550402093562958 2.8594336720046574E-5 68-69 2.8594336720046574E-5 9.436131117615369E-4 0.0 0.1730100343246418 2.8594336720046574E-5 70-71 2.8594336720046574E-5 9.722074484815836E-4 0.0 0.179901269474173 2.8594336720046574E-5 72-73 2.8594336720046574E-5 9.722074484815836E-4 0.0 0.18587748584866276 2.8594336720046574E-5 74-75 2.8594336720046574E-5 0.00100080178520163 0.0 0.19065274008091054 2.8594336720046574E-5 76-77 2.8594336720046574E-5 0.001057990458641723 0.0 0.1948704047471174 2.8594336720046574E-5 78-79 2.8594336720046574E-5 0.0010865847953617697 0.0 0.19844469683712324 2.8594336720046574E-5 80-81 2.8594336720046574E-5 0.0010865847953617697 0.0 0.20017465420868602 2.8594336720046574E-5 82-83 2.8594336720046574E-5 0.0010865847953617697 0.0 0.20097529563684735 2.8594336720046574E-5 84-85 2.8594336720046574E-5 0.0010865847953617697 0.0 0.20160437104468837 2.8594336720046574E-5 86-87 2.8594336720046574E-5 0.0010865847953617697 0.0 0.20180453140172872 2.8594336720046574E-5 88-89 2.8594336720046574E-5 0.0011866649738819328 0.0 0.20190461158024886 2.8594336720046574E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 4480 0.0 42.358696 1 TATACAC 5785 0.0 35.727386 3 TTATACA 6020 0.0 32.660515 2 GGTATCA 4945 0.0 31.857384 1 GTATCAA 7455 0.0 26.806105 1 TACACAT 7820 0.0 26.275482 5 ACACATC 7530 0.0 25.361248 6 ACATCTC 7690 0.0 24.991106 8 AACGCAG 8425 0.0 23.671326 6 TACATGG 9840 0.0 23.543575 2 GTACATG 10090 0.0 23.439405 1 ATACACA 9465 0.0 23.283806 4 TCAACGC 8510 0.0 23.245516 4 CAACGCA 8520 0.0 23.218231 5 ATCAACG 8515 0.0 23.08992 3 CACATCT 8275 0.0 22.78617 7 ACATGGG 9885 0.0 22.62057 3 TATCAAC 9070 0.0 21.766493 2 CATCTCC 9325 0.0 20.522877 9 ACGCAGA 9620 0.0 20.521753 7 >>END_MODULE