##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139870_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10769332 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.718019186333933 31.0 31.0 34.0 30.0 34.0 2 31.910435020482236 31.0 31.0 34.0 30.0 34.0 3 31.93175342723207 31.0 31.0 34.0 30.0 34.0 4 35.665869805109544 37.0 35.0 37.0 33.0 37.0 5 35.45733746531354 37.0 35.0 37.0 33.0 37.0 6 35.45564209553573 37.0 35.0 37.0 33.0 37.0 7 35.33235459729536 37.0 35.0 37.0 32.0 37.0 8 35.30010487187135 37.0 35.0 37.0 32.0 37.0 9 36.8629982806733 39.0 37.0 39.0 33.0 39.0 10-11 36.69069283963016 39.0 35.0 39.0 32.0 39.0 12-13 36.63789369665639 39.0 35.0 39.0 32.0 39.0 14-15 37.74565674082663 40.0 37.0 41.0 32.0 41.0 16-17 37.73409813162042 40.0 37.0 41.0 32.0 41.0 18-19 37.70873560217105 39.5 37.0 41.0 32.0 41.0 20-21 37.68163914521157 39.5 37.0 41.0 32.0 41.0 22-23 37.58565947637618 39.0 36.5 41.0 32.0 41.0 24-25 37.46223811983993 39.0 36.0 41.0 32.0 41.0 26-27 37.283006810309175 39.0 36.0 41.0 31.0 41.0 28-29 37.13943268270377 39.0 36.0 40.0 31.0 41.0 30-31 37.00593189696042 39.0 36.0 40.0 31.0 41.0 32-33 37.16741456094756 39.0 36.0 40.0 31.0 41.0 34-35 37.10915740563193 39.0 36.0 40.0 31.0 41.0 36-37 37.011680336985684 39.0 35.5 40.0 30.5 41.0 38-39 36.791948065130875 39.0 35.0 40.0 30.0 41.0 40-41 36.80139453367485 39.0 35.0 40.0 30.0 41.0 42-43 36.6628473356701 38.5 35.0 40.0 30.0 41.0 44-45 36.72736069092647 38.5 35.0 40.0 30.0 41.0 46-47 36.87927085973517 39.0 35.0 40.0 30.0 41.0 48-49 36.80395131546634 39.0 35.0 40.0 30.0 41.0 50-51 36.643422487582576 39.0 35.0 40.0 30.0 41.0 52-53 36.51126399734118 38.5 35.0 40.0 30.0 41.0 54-55 36.33922890386195 38.0 35.0 40.0 29.5 41.0 56-57 36.12644931443536 38.0 34.0 40.0 29.0 41.0 58-59 35.96772619422603 38.0 34.0 40.0 29.0 41.0 60-61 35.715364122420056 37.5 34.0 40.0 28.5 41.0 62-63 35.44893284898496 37.0 34.0 40.0 28.0 41.0 64-65 35.21174663691154 36.5 33.5 39.0 28.0 41.0 66-67 34.9110954950749 36.0 33.0 39.0 28.0 40.5 68-69 34.57378609156919 35.5 33.0 39.0 28.0 40.0 70-71 34.20875254156091 35.0 32.5 38.0 27.0 40.0 72-73 33.9225900774437 35.0 32.0 37.5 27.0 39.5 74-75 33.5747421925179 35.0 32.0 37.0 26.0 39.0 76-77 32.53252698121341 34.0 30.5 36.0 26.0 38.5 78-79 32.90222580873472 34.0 31.0 36.0 26.0 38.0 80-81 32.798384976802765 34.0 31.0 35.5 26.0 37.0 82-83 32.41217444820202 34.0 31.0 35.0 26.0 37.0 84-85 32.19837750559735 34.0 31.0 35.0 26.0 36.5 86-87 32.12211844709623 34.0 31.0 35.0 26.0 36.0 88-89 31.984414599782795 34.0 31.0 35.0 26.0 36.0 90-91 31.87312946482026 34.0 31.0 35.0 25.0 35.0 92-93 31.79993331035938 34.0 31.0 35.0 25.0 35.0 94-95 31.772823817377507 34.0 31.0 35.0 25.0 35.0 96-97 31.708409404248666 34.0 31.0 35.0 25.0 35.0 98-99 31.944232267349452 34.0 31.0 35.0 26.0 35.0 100-101 31.02157386619284 32.5 29.0 34.5 23.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 22.0 20 141.0 21 845.0 22 3540.0 23 11992.0 24 29958.0 25 60873.0 26 106063.0 27 163531.0 28 226774.0 29 295568.0 30 367195.0 31 444422.0 32 538116.0 33 659986.0 34 837183.0 35 1090652.0 36 1502171.0 37 1958487.0 38 1661155.0 39 788040.0 40 22615.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 37.63301196397325 21.821242023182126 14.464054037892044 26.08169197495258 2 14.501803623069105 21.82908095777599 40.00752333724915 23.66159208190576 3 17.086779384273786 27.24831958008166 31.289461593346736 24.375439442297814 4 12.442556779298247 19.233332064297407 37.078174779675244 31.245936376729098 5 12.836153625870203 37.9787065715868 36.080696555738086 13.104443246804909 6 30.123660409020726 38.020194753026466 18.036160460091676 13.819984377861132 7 26.063891427992004 32.1140716991546 22.96184201582791 18.860194857025487 8 24.817147433099844 36.26653909453251 21.23450182425428 17.681811648113367 9 25.50550953392467 15.863035887462656 20.229722697749498 38.401731880863174 10-11 24.334341257192182 26.344424148127292 28.872584669132685 20.448649925547844 12-13 25.16650986337871 23.447053169128782 28.513235547014432 22.873201420478075 14-15 22.51008233379749 24.76406150353615 25.27922808954167 27.446628073124685 16-17 22.669570513511587 28.156060039206388 26.055474320520545 23.118895126761476 18-19 22.831997841248768 27.052204209620612 27.430733177772254 22.685064771358363 20-21 23.23888291269248 26.366991473767182 27.01499761158504 23.37912800195531 22-23 22.972822984052197 26.89407509045832 26.857568540223753 23.27553338526573 24-25 23.00185568814777 27.073815584324368 27.118289295966374 22.80603943156149 26-27 22.933685621931126 27.018053628735224 27.386501955480576 22.661758793853075 28-29 22.453140410971965 26.58415662415764 27.78919723225049 23.1735057326199 30-31 22.87964898317379 26.587974160774536 26.83558057076781 23.696796285283867 32-33 23.23340396440254 26.63315726962726 27.53129228089811 22.602146485072083 34-35 23.02723919731054 27.349989662610664 27.19794183636724 22.424829303711558 36-37 22.597440572186564 26.98785022944617 27.10682196560227 23.307887232764998 38-39 22.631017574781882 26.63966131667933 27.57871577419701 23.150605334341773 40-41 22.708433877242605 26.512219927225978 27.84539222895016 22.93395396658126 42-43 23.290321216027486 26.4054878150287 27.512376118854608 22.7918148500892 44-45 22.640350711906294 27.14510055546244 27.26284748633658 22.951701246294686 46-47 23.4135023397703 26.340413339970294 26.712650895969652 23.533433424289747 48-49 23.15874626359141 26.259471150709 26.74372409117691 23.83805849452267 50-51 22.50827368403958 26.447043276064942 27.400785483436106 23.643897556459372 52-53 22.711085626334494 26.609722023122405 27.72216605511586 22.957026295427244 54-55 22.883223126395773 26.545309205211748 27.010005522958192 23.56146214543429 56-57 23.35576910323168 26.89333350730976 26.529794667198374 23.221102722260188 58-59 22.63208457622942 27.3420821888822 27.431644712299992 22.59418852258839 60-61 23.24302115906964 27.98961576395697 26.051015199261958 22.716347877711435 62-63 22.734777621370622 28.208933936524417 26.180369201101144 22.87591924100382 64-65 22.751402588341914 27.835563683479187 26.290085748821664 23.122947979357235 66-67 22.973723693364917 27.475187658935717 26.223228151099082 23.327860496600284 68-69 23.108362986122287 27.077795385431514 26.49184210688384 23.321999521562358 70-71 23.11191310906326 26.643257771368344 26.6577281292456 23.587100990322796 72-73 23.118460804221886 26.86560256305276 26.488526155346538 23.52741047737882 74-75 22.863650870475585 27.070690240028327 26.605998022105325 23.45966086739076 76-77 23.103608941306277 27.013971178471767 26.464682831985304 23.41773704823665 78-79 23.124078298289284 27.03526061801685 26.439937573312328 23.40072351038154 80-81 23.06767843062505 26.99672162812564 26.399663998528688 23.535935942720617 82-83 23.183491666053477 26.88702001006656 26.509561692097122 23.419926631782843 84-85 23.21826717746292 26.877261567365235 26.395699447558457 23.50877180761339 86-87 22.991140045282396 27.057465145312708 26.570396855322 23.380997954082897 88-89 23.111140670412215 26.796107330791475 26.593878099138262 23.498873899658047 90-91 23.04489842051501 26.836390587197794 26.625594532213466 23.493116460073725 92-93 23.109380441650426 26.91866684622239 26.618977728225566 23.352974983901614 94-95 22.784726751258344 26.99891007933079 26.699150266723766 23.517212902687103 96-97 22.619528293564088 26.943283679734453 26.901866214483327 23.535321812218136 98-99 22.75296552119711 27.629025817738196 26.942732404868373 22.675276256196323 100-101 26.036087233900673 35.65686348569987 27.74401693659444 10.563032343805014 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2572.0 1 2542.0 2 3626.5 3 4916.5 4 6367.0 5 9641.0 6 12065.5 7 13292.5 8 13515.0 9 12627.0 10 11500.5 11 10536.0 12 11690.5 13 15878.5 14 25173.5 15 37419.0 16 46311.0 17 49554.5 18 49327.0 19 47454.0 20 44581.5 21 42726.5 22 43050.5 23 47342.5 24 56628.5 25 70413.0 26 88847.0 27 108354.0 28 126478.0 29 144867.0 30 161638.5 31 178991.5 32 202150.0 33 226098.0 34 250845.5 35 280828.5 36 316305.5 37 343281.0 38 353127.0 39 359848.5 40 371648.5 41 382409.0 42 390826.5 43 406145.5 44 423220.0 45 439662.5 46 452849.5 47 468732.5 48 529243.0 49 567762.0 50 554543.0 51 550750.5 52 532738.0 53 500046.5 54 470824.5 55 438438.0 56 404386.5 57 377138.0 58 347887.0 59 304777.5 60 253020.0 61 202158.0 62 158045.0 63 121952.5 64 93426.5 65 70734.5 66 52432.5 67 39436.0 68 30049.5 69 22606.5 70 16746.0 71 12258.0 72 8946.0 73 6354.5 74 4531.0 75 3261.5 76 2245.5 77 1505.5 78 1054.5 79 750.0 80 530.0 81 375.5 82 267.0 83 191.5 84 143.0 85 97.5 86 69.0 87 55.0 88 35.5 89 22.0 90 17.0 91 14.0 92 11.5 93 6.0 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0016249847251435835 3 0.0 4 1.8571254001640957E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0015692709631386606 18-19 0.0013278446611173283 20-21 1.3929323263794593E-5 22-23 0.002298731327858204 24-25 1.4864807364174218E-4 26-27 0.0011525932092368448 28-29 5.210134493109272E-4 30-31 1.631532317438759E-4 32-33 0.001006086024941013 34-35 0.015427261052068653 36-37 0.03323885652648454 38-39 0.008583257066969415 40-41 0.005150164568087547 42-43 0.006726923055456578 44-45 0.004809611289198952 46-47 0.0027815310562972328 48-49 0.0012907531059703197 50-51 1.8101762315171958E-4 52-53 9.431035084393618E-5 54-55 0.0042796979043020255 56-57 0.01122453292572788 58-59 0.009268955150316033 60-61 0.007717598613667058 62-63 0.0018417593349202403 64-65 0.0011878834726875168 66-67 0.001326204431926548 68-69 0.0 70-71 0.0 72-73 7.932339021923861E-4 74-75 8.635910886035567E-4 76-77 9.039649581858094E-5 78-79 9.198863125647533E-4 80-81 0.0022570152319729446 82-83 0.004242613548325213 84-85 0.011402101915149137 86-87 0.00725631331239971 88-89 0.06724819137013505 90-91 0.0 92-93 7.655871632469164E-6 94-95 1.1860701282149714E-4 96-97 0.008284458743601949 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 400.0 20-21 1509.0 22-23 2806.0 24-25 4653.0 26-27 8263.0 28-29 16322.0 30-31 38861.0 32-33 50750.0 34-35 68117.0 36-37 103467.0 38-39 116718.0 40-41 115013.0 42-43 123957.0 44-45 141180.0 46-47 142658.0 48-49 135011.0 50-51 125843.0 52-53 124067.0 54-55 137128.0 56-57 151159.0 58-59 159283.0 60-61 167539.0 62-63 165058.0 64-65 171771.0 66-67 181259.0 68-69 141030.0 70-71 137591.0 72-73 131356.0 74-75 130931.0 76-77 130998.0 78-79 142418.0 80-81 148123.0 82-83 140981.0 84-85 141428.0 86-87 148479.0 88-89 164360.0 90-91 180259.0 92-93 198925.0 94-95 254901.0 96-97 316828.0 98-99 878287.0 100-101 4929645.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.90429149957187 #Duplication Level Percentage of deduplicated Percentage of total 1 89.32529864617004 74.05450597248392 2 6.957392489179598 11.535953899997546 3 1.8912388240187519 4.703754442852743 4 0.7695198887758654 2.551860046951699 5 0.37703666570359046 1.5628978819758548 6 0.21222647348562518 1.0556691253067056 7 0.13517203609361086 0.7844439318026755 8 0.08506548441301401 0.564183497306304 9 0.054954828160374364 0.41003919838049013 >10 0.18772964197482933 2.3203587980948353 >50 0.003124256587789921 0.17264457217812632 >100 0.001117799961987204 0.1649754142300682 >500 4.098874964776303E-5 0.02433068110566749 >1k 8.197672510918608E-5 0.09438253733332538 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.285627000820479E-6 0.0 0.0 0.0 3 0.0 9.285627000820479E-6 0.0 0.0 0.0 4 0.0 3.7142508003281915E-5 0.0 9.285627000820479E-6 9.285627000820479E-6 5 0.0 3.7142508003281915E-5 0.0 9.285627000820479E-6 9.285627000820479E-6 6 0.0 3.7142508003281915E-5 0.0 9.285627000820479E-6 1.8571254001640957E-5 7 0.0 3.7142508003281915E-5 0.0 9.285627000820479E-6 1.8571254001640957E-5 8 0.0 4.642813500410239E-5 0.0 9.285627000820479E-6 2.7856881002461433E-5 9 0.0 9.285627000820478E-5 0.0 3.7142508003281915E-5 3.7142508003281915E-5 10-11 0.0 1.0678471050943549E-4 0.0 3.7142508003281915E-5 3.7142508003281915E-5 12-13 0.0 1.1142752400984573E-4 0.0 3.7142508003281915E-5 3.7142508003281915E-5 14-15 0.0 1.6249847251435839E-4 0.0 3.7142508003281915E-5 4.642813500410239E-5 16-17 0.0 1.7642691301558908E-4 0.0 1.0214189700902526E-4 8.35706430073843E-5 18-19 0.0 1.9499816701723003E-4 0.0 1.5785565901394813E-4 9.285627000820478E-5 20-21 0.0 2.0892660751846073E-4 0.0 1.671412860147686E-4 1.067847105094355E-4 22-23 0.0 2.367834885209222E-4 0.0 1.8106972651599934E-4 1.2999877801148668E-4 24-25 0.0 2.5535474252256314E-4 0.0 1.9964098051764029E-4 1.4857003201312766E-4 26-27 0.0 2.5999755602297336E-4 0.0 2.460691155217427E-4 1.4857003201312766E-4 28-29 0.0 2.6928318302379386E-4 0.0 6.685651440590744E-4 1.4857003201312766E-4 30-31 0.0 2.7392599652420414E-4 0.0 0.0022610501746997864 1.4857003201312766E-4 32-33 0.0 2.971400640262553E-4 0.0 0.005682803724502132 1.671412860147686E-4 34-35 0.0 3.203541315283065E-4 0.0 0.009559552997344681 2.2285504801969146E-4 36-37 0.0 3.4356819903035767E-4 0.0 0.01536771268635789 2.274978615201017E-4 38-39 0.0 3.4821101253076794E-4 0.0 0.023641206344088936 2.4142630202133244E-4 40-41 0.0 3.621394530319986E-4 0.0 0.033340043746445926 2.4142630202133244E-4 42-43 0.0 3.8071070703363957E-4 0.0 0.041399967983158106 2.460691155217427E-4 44-45 0.0 4.27138842037742E-4 0.0 0.051391302636040935 2.507119290221529E-4 46-47 0.0 4.549957230402034E-4 0.0 0.061271209764913924 2.7392599652420414E-4 48-49 0.0 4.5963853654061365E-4 0.0 0.07130897255280086 3.0642569102707577E-4 50-51 0.0 4.828526040426649E-4 0.0 0.08069209863712995 3.0642569102707577E-4 52-53 0.0 4.967810445438957E-4 0.0 0.08935558862889545 3.342825720295372E-4 54-55 0.0 5.014238580443058E-4 0.0 0.0985808590542106 3.621394530319986E-4 56-57 0.0 5.014238580443058E-4 0.0 0.10840969523457908 3.6678226653240884E-4 58-59 0.0 5.014238580443058E-4 0.0 0.11779282131890817 3.8535352053404985E-4 60-61 0.0 5.107094850451263E-4 0.0 0.1266838091721938 4.08567588036101E-4 62-63 0.0 5.107094850451263E-4 0.0 0.13555622577147775 4.549957230402034E-4 64-65 0.0 5.757088740508696E-4 0.0 0.1440200747827256 4.549957230402034E-4 66-67 0.0 5.757088740508696E-4 0.0 0.15270213602849275 4.549957230402034E-4 68-69 0.0 5.849945010516901E-4 0.0 0.16202954835081693 4.5963853654061365E-4 70-71 0.0 5.942801280525106E-4 0.0 0.17118053376012551 4.642813500410239E-4 72-73 0.0 5.942801280525106E-4 0.0 0.17858582129327982 4.828526040426649E-4 74-75 0.0 5.989229415529209E-4 0.0 0.18553611310339396 4.828526040426649E-4 76-77 0.0 6.082085685537413E-4 0.0 0.19210569420647444 4.874954175430751E-4 78-79 0.0 6.128513820541515E-4 0.0 0.19778385511747618 4.921382310434854E-4 80-81 0.0 6.128513820541515E-4 0.0 0.20141453527479697 5.107094850451263E-4 82-83 0.0 6.128513820541515E-4 0.0 0.2039634398865222 5.292807390467673E-4 84-85 0.0 6.128513820541515E-4 0.0 0.20606663440220804 5.292807390467673E-4 86-87 0.0 6.128513820541515E-4 0.0 0.20639627416073716 5.339235525471775E-4 88-89 0.0 6.314226360557925E-4 0.0 0.20649377324424578 5.385663660475877E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 17835 0.0 52.03867 1 TATACAC 20815 0.0 45.693573 3 TTATACA 21405 0.0 43.841667 2 GGTATCA 12105 0.0 37.056847 1 TACACAT 28695 0.0 33.33923 5 ATACACA 31285 0.0 31.035948 4 GTATCAA 19550 0.0 30.193888 1 ACACATC 31795 0.0 29.327085 6 ACATCTC 34270 0.0 27.185902 8 CACATCT 34720 0.0 26.787815 7 CATCTCC 39110 0.0 23.821548 9 ATCAACG 24780 0.0 23.083805 3 TCAACGC 24860 0.0 22.94565 4 CAACGCA 25210 0.0 22.595594 5 TATCAAC 26025 0.0 22.16306 2 AACGCAG 26605 0.0 21.425743 6 CCGTCTT 27055 0.0 19.396278 46-47 GTACATG 33345 0.0 19.297768 1 ACGCAGA 29545 0.0 19.280249 7 TATGCCG 27265 0.0 19.213015 42-43 >>END_MODULE