##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139868_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3684110 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.82419580305691 34.0 31.0 34.0 31.0 34.0 2 33.02378132031888 34.0 33.0 34.0 31.0 34.0 3 33.12121272166141 34.0 33.0 34.0 31.0 34.0 4 36.05414740602208 37.0 35.0 37.0 34.0 37.0 5 35.92917013878522 37.0 35.0 37.0 34.0 37.0 6 36.43667018628651 37.0 37.0 37.0 35.0 38.0 7 36.44354918827071 37.0 37.0 37.0 35.0 38.0 8 36.43913591070842 37.0 37.0 37.0 35.0 38.0 9 38.10649926305132 39.0 38.0 39.0 37.0 39.0 10-11 38.01925770403164 39.0 38.0 39.0 37.0 39.0 12-13 37.99330788168649 39.0 38.0 39.0 37.0 39.0 14-15 39.26651145052672 40.0 38.0 41.0 37.0 41.0 16-17 39.21461099152848 40.0 38.0 41.0 37.0 41.0 18-19 39.29080198473987 40.0 38.0 41.0 37.0 41.0 20-21 39.30442663313032 40.0 38.0 41.0 37.0 41.0 22-23 39.246725795714156 40.0 38.0 41.0 37.0 41.0 24-25 39.22526908368882 40.0 38.0 41.0 37.0 41.0 26-27 39.090956916651784 40.0 38.0 41.0 36.5 41.0 28-29 38.998031566982874 40.0 38.0 41.0 36.0 41.0 30-31 38.94983233080606 40.0 38.0 41.0 36.0 41.0 32-33 38.829831683106335 40.0 38.0 41.0 35.0 41.0 34-35 38.79535408726588 40.0 38.0 41.0 35.0 41.0 36-37 38.75171941712601 40.0 38.0 41.0 35.0 41.0 38-39 38.6469217509738 40.0 38.0 41.0 35.0 41.0 40-41 38.65870278699401 40.0 38.0 41.0 35.0 41.0 42-43 38.684049883658275 40.0 38.0 41.0 35.0 41.0 44-45 38.60688230718601 40.0 38.0 41.0 35.0 41.0 46-47 38.51229070848623 40.0 38.0 41.0 35.0 41.0 48-49 38.484384916803194 40.0 38.0 41.0 35.0 41.0 50-51 38.31560817295051 40.0 38.0 41.0 35.0 41.0 52-53 38.17923920661971 39.5 37.5 41.0 34.5 41.0 54-55 37.945342445812116 39.0 37.0 41.0 34.0 41.0 56-57 37.79337397149055 39.0 37.0 41.0 34.0 41.0 58-59 37.66109613562879 39.0 36.5 41.0 34.0 41.0 60-61 37.420128012820605 38.0 36.0 40.5 33.5 41.0 62-63 37.29932476533838 38.0 35.5 40.0 33.0 41.0 64-65 37.09610673700606 38.0 35.0 40.0 33.0 41.0 66-67 36.89178113614956 38.0 35.0 40.0 33.0 41.0 68-69 36.66094554217811 37.5 35.0 39.5 33.0 41.0 70-71 36.273967139584556 37.0 35.0 39.0 33.0 41.0 72-73 36.02356210935877 37.0 35.0 39.0 33.0 40.5 74-75 35.7302095977022 36.0 35.0 38.0 32.0 40.0 76-77 34.234804288753494 34.5 33.0 37.5 30.0 39.0 78-79 35.07272440109482 35.0 34.5 38.0 31.5 39.0 80-81 35.00878231100897 35.0 35.0 37.0 32.0 39.0 82-83 34.79297279491381 35.0 34.5 37.0 32.0 38.0 84-85 34.59945805456532 35.0 34.0 36.5 32.0 38.0 86-87 34.463009627052166 35.0 34.0 36.0 31.5 38.0 88-89 34.33651405857982 35.0 34.0 36.0 31.0 38.0 90-91 34.279007366627674 35.0 34.0 36.0 31.0 38.0 92-93 34.194058507568954 35.0 34.0 35.5 31.0 38.0 94-95 34.063775132278764 35.0 34.0 35.0 31.0 38.0 96-97 34.08850036413487 35.0 34.0 35.0 31.0 38.0 98-99 34.08405395099147 35.0 34.0 35.0 31.0 37.5 100-101 32.76029672423894 34.0 32.0 35.0 28.0 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 3.0 16 9.0 17 10.0 18 28.0 19 52.0 20 98.0 21 324.0 22 770.0 23 1731.0 24 3214.0 25 5460.0 26 8632.0 27 12036.0 28 16866.0 29 24434.0 30 33230.0 31 40957.0 32 53888.0 33 76577.0 34 121511.0 35 203226.0 36 423892.0 37 1111747.0 38 1005144.0 39 527329.0 40 12942.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.17814071783958 20.14280246789591 13.20408456859323 25.474972245671275 2 14.693947792938284 20.54330805054531 41.588833626804764 23.17391052971164 3 17.339691120550498 27.015293596167954 31.42582525784515 24.219190025436397 4 11.736755960055481 18.93689384953218 37.127365903841095 32.198984286571246 5 12.64872655811037 38.190743490286664 35.65143277480857 13.509097176794397 6 29.02092074740764 37.56815108409286 18.909886664129637 14.501041504369866 7 25.623230576720026 32.860962349115525 22.416920233109217 19.098886841055236 8 25.106959347033612 35.29294727899004 21.728992891091742 17.871100482884607 9 25.77236449844453 15.31515489905429 20.033229201416137 38.87925140108504 10-11 24.18519754561394 25.966121698429074 28.681752130134413 21.166928625822575 12-13 25.413764780415722 23.62538944403759 28.032004034637513 22.928841740909174 14-15 22.768076957528415 24.87933313608986 25.32005016136869 27.03253974501304 16-17 22.352929201353923 28.497547575941002 26.026503008867813 23.123020213837265 18-19 22.368088900711435 26.765813181473952 27.61289700904696 23.253200908767653 20-21 23.108701146021282 25.93026857218707 27.679308939856345 23.281721341935302 22-23 22.40903609453416 27.150091733555154 27.382791990430828 23.058080181479866 24-25 22.696736946421176 27.41822814858745 27.759885267075425 22.125149637915957 26-27 22.876755160046255 27.3288833556946 27.80589951638276 21.988461967876386 28-29 21.411061378987785 26.646779860121605 28.210744857891818 23.731413902998792 30-31 22.757502666669573 26.261214736157857 28.724421239995902 22.256861357176668 32-33 21.683589135223063 27.70771028046986 28.1709882885128 22.437712295794274 34-35 21.71144672025605 27.678021461118473 29.178570975599133 21.43196084302635 36-37 22.94253192628268 27.024640260430736 27.66912512521645 22.363702688070134 38-39 22.211132064576734 26.232911149950915 28.467225039751337 23.08873174572101 40-41 22.088558758992747 26.086904966506275 29.157050140513785 22.667486133987193 42-43 22.853417739005124 25.990553449580823 28.751683496686148 22.404345314727905 44-45 21.914209358155546 27.047306093372136 28.404627487383298 22.63385706108902 46-47 23.133342941564443 26.0903583795374 27.060565230385773 23.715733448512378 48-49 22.71506777873798 26.245748558852217 27.430192489454264 23.608991172955545 50-51 22.150139849362525 26.695414339712332 27.857318370679106 23.29712744024604 52-53 22.105898661024334 26.994116322234934 28.573829303297295 22.326155713443438 54-55 22.136506855935554 27.242833431534276 27.27794013453795 23.34271957799223 56-57 23.149260104183185 27.686214230235894 26.091764160495785 23.072761505085133 58-59 21.911545735311382 28.418227802867506 27.773193784359542 21.89703267746157 60-61 23.033002198744523 29.31663888555335 25.755670026858468 21.89468888884366 62-63 22.13355518103251 29.65414711081972 25.933402004880975 22.278895703266798 64-65 22.26806098996481 29.26102580160432 26.088227702018834 22.382685506412038 66-67 22.48272608838918 28.51968451243525 26.221830558184294 22.77575884099127 68-69 22.681457806082346 27.909541137585002 26.398188633384056 23.010812422948597 70-71 22.942970461205135 27.251485287519223 26.633806785034338 23.17173746624131 72-73 22.67232680920393 27.41654041144289 26.74548489720099 23.16564788215219 74-75 22.750681012400896 27.372184220097097 26.840848640648524 23.03628612685348 76-77 22.77480079922957 27.362096899624134 26.53187988007579 23.33122242107051 78-79 22.55460445808833 27.527073605243242 26.50108072112747 23.41724121554096 80-81 22.752735537441527 27.380680243692456 26.651045987946944 23.215538230919076 82-83 23.03922696422409 27.185279692124283 26.728527655480377 23.046965688171255 84-85 22.941872342144226 27.405698931702737 26.502232572278267 23.15019615387477 86-87 22.825697212876513 27.307360328462043 26.719336716796526 23.14760574186491 88-89 23.033267298118798 27.148532676450948 26.51929855537262 23.298901470057633 90-91 22.8659780219289 27.071404703392147 26.732893682505942 23.329723592173007 92-93 23.231796702146063 27.01035245700134 26.629214506186887 23.128636334665707 94-95 22.721933898791868 27.213798912893562 26.799730460282877 23.26453672803169 96-97 22.973478171368537 27.208854963999496 26.670515553683693 23.14715131094827 98-99 23.253245179019657 27.93159282106859 26.81462557800452 22.00053642190723 100-101 27.935571566599204 35.04135509122591 27.47550408769164 9.547569254483241 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 850.0 1 871.5 2 1450.5 3 2109.5 4 3080.5 5 5374.5 6 7020.0 7 7581.5 8 7368.0 9 6463.5 10 5452.0 11 4642.5 12 5210.0 13 7514.0 14 12471.5 15 18626.5 16 23056.5 17 25171.5 18 25085.5 19 23184.0 20 20490.0 21 18034.0 22 16784.5 23 17563.0 24 20315.5 25 24830.0 26 30795.0 27 37167.0 28 43885.5 29 51575.0 30 58402.0 31 64165.0 32 71219.0 33 78398.5 34 85890.5 35 94606.5 36 102849.0 37 111080.5 38 117423.5 39 121342.0 40 125772.5 41 129868.0 42 134558.5 43 143319.5 44 153880.0 45 168498.5 46 190763.5 47 211373.0 48 212103.0 49 204319.5 50 200723.5 51 192995.5 52 182234.5 53 169999.5 54 158297.0 55 147435.5 56 135996.0 57 120977.0 58 105614.0 59 89363.5 60 72166.5 61 58002.0 62 46242.5 63 36403.0 64 27639.5 65 20723.0 66 15495.5 67 11942.0 68 9228.0 69 6791.0 70 4872.0 71 3353.0 72 2306.0 73 1457.0 74 917.5 75 622.5 76 433.0 77 292.5 78 203.0 79 149.5 80 106.5 81 72.5 82 50.0 83 33.0 84 22.5 85 12.5 86 8.5 87 8.5 88 6.5 89 4.0 90 3.5 91 3.0 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 1.0 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013300362909902258 3 5.157283577309038E-4 4 0.0 5 0.0 6 4.3429756440497164E-4 7 0.0 8 0.0 9 2.7143597775310728E-5 10-11 3.1215137441607333E-4 12-13 3.257231733037287E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 2.716492204482321E-5 28-29 0.0 30-31 1.3633278177634253E-5 32-33 2.466060499862243E-4 34-35 0.0 36-37 5.840966340597039E-4 38-39 1.549208277109983E-4 40-41 4.2859151114509365E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 1.5473461620708938E-4 52-53 0.0 54-55 5.901591754997811E-4 56-57 1.626591253558575E-5 58-59 0.0 60-61 7.801716988306583E-4 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 3.857082741753268E-5 74-75 1.9584794522211312E-5 76-77 0.0 78-79 4.0419661174106276E-5 80-81 0.0 82-83 2.09154657529118E-5 84-85 4.251504554317966E-5 86-87 5.400033393806507E-4 88-89 6.588144765257813E-5 90-91 4.470265692476565E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 82.0 20-21 356.0 22-23 822.0 24-25 1205.0 26-27 2753.0 28-29 7306.0 30-31 17101.0 32-33 21248.0 34-35 28285.0 36-37 42131.0 38-39 51607.0 40-41 46300.0 42-43 50982.0 44-45 58348.0 46-47 57314.0 48-49 54044.0 50-51 49378.0 52-53 46435.0 54-55 58458.0 56-57 62666.0 58-59 63286.0 60-61 64938.0 62-63 65142.0 64-65 64629.0 66-67 69972.0 68-69 52590.0 70-71 44077.0 72-73 40011.0 74-75 39049.0 76-77 39147.0 78-79 41604.0 80-81 42301.0 82-83 39180.0 84-85 37186.0 86-87 37658.0 88-89 39125.0 90-91 41016.0 92-93 39519.0 94-95 41243.0 96-97 65186.0 98-99 315247.0 100-101 1745183.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.33788435243065 #Duplication Level Percentage of deduplicated Percentage of total 1 89.84420056237592 75.77269796766245 2 6.767711536033561 11.415489457132184 3 1.804452626671096 4.5655115084287985 4 0.7246238431094646 2.4445296751671948 5 0.3257008869474737 1.3734461868430061 6 0.17153467094440958 0.8680122744325116 7 0.10178239756264275 0.6008878452325898 8 0.061758597151687 0.4166871539477865 9 0.042033363077659355 0.3190504422768627 >10 0.15401859366823945 1.9607961265219975 >50 0.0012870876349764 0.06883090219193765 >100 8.432168414896585E-4 0.1698306769509706 >500 5.261798143245469E-5 0.024229783211681535 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 5.4287195550621456E-5 0.0 0.0 0.0 0.0 3 5.4287195550621456E-5 0.0 0.0 0.0 0.0 4 5.4287195550621456E-5 0.0 0.0 0.0 0.0 5 1.0857439110124291E-4 0.0 0.0 0.0 0.0 6 1.6286158665186436E-4 0.0 0.0 0.0 0.0 7 2.7143597775310726E-4 0.0 0.0 0.0 0.0 8 2.7143597775310726E-4 0.0 0.0 0.0 0.0 9 2.7143597775310726E-4 0.0 0.0 0.0 0.0 10-11 3.257231733037287E-4 0.0 0.0 0.0 0.0 12-13 3.664385699666948E-4 0.0 0.0 0.0 0.0 14-15 5.293001566185592E-4 0.0 0.0 1.3571798887655364E-5 0.0 16-17 5.564437543938699E-4 0.0 0.0 2.7143597775310728E-5 0.0 18-19 7.87164335484011E-4 0.0 0.0 2.7143597775310728E-5 0.0 20-21 9.228823243605646E-4 0.0 0.0 5.4287195550621456E-5 0.0 22-23 0.0010993157099000845 0.0 0.0 6.785899443827681E-5 0.0 24-25 0.0013571798887655362 0.0 0.0 1.3571798887655363E-4 0.0 26-27 0.0013571798887655362 0.0 0.0 1.7643338553951973E-4 0.0 28-29 0.001710046659844576 0.0 0.0 8.143079332593218E-4 0.0 30-31 0.0019000518442717509 0.0 0.0 0.002917936760845903 0.0 32-33 0.001913623643159406 0.0 0.0 0.007220197008232653 0.0 34-35 0.0021036288275865815 0.0 0.0 0.013164644921025703 0.0 36-37 0.002470067397553276 0.0 0.0 0.020995572879202846 0.0 38-39 0.0027957905708570047 0.0 0.0 0.033210191878092675 0.0 40-41 0.0027957905708570047 0.0 0.0 0.04615768801691589 0.0 42-43 0.0029315085597335583 0.0 0.0 0.05749014008810811 0.0 44-45 0.0032029445374866655 0.0 0.0 0.06939260771258188 0.0 46-47 0.0037051010963299142 0.0 0.0 0.0819736652814384 0.0 48-49 0.003854390884094123 0.0 0.0 0.09380827391147387 0.0 50-51 0.003854390884094123 0.0 0.0 0.10545287735708217 0.0 52-53 0.003881534481869434 0.0 0.0 0.1169074756182633 0.0 54-55 0.003935821677420056 0.0 0.0 0.12822635589056786 0.0 56-57 0.004125826861847231 0.0 0.0 0.13908379500069218 0.0 58-59 0.004125826861847231 0.0 0.0 0.15036195987633377 0.0 60-61 0.004139398660734886 0.0 0.0 0.16157226575753708 0.0 62-63 0.004207257655173163 0.0 0.0 0.1716696841299527 0.0 64-65 0.004234401252948473 0.0 0.0 0.1807899329824571 0.0 66-67 0.004370119241825027 0.0 0.0 0.18961160225943308 0.0 68-69 0.004370119241825027 0.0 0.0 0.19935615386076963 0.0 70-71 0.004424406437375648 0.0 0.0 0.20764852298112707 0.0 72-73 0.004492265431813925 0.0 0.0 0.21432584803385352 0.0 74-75 0.004519409029589236 0.0 0.0 0.2197274239911403 0.0 76-77 0.004546552627364546 0.0 0.0 0.22473541778068518 0.0 78-79 0.004573696225139858 0.0 0.0 0.22909196522362252 0.0 80-81 0.00465512701846579 0.0 0.0 0.23130416844231036 0.0 82-83 0.004668698817353445 0.0 0.0 0.2323899123533228 0.0 84-85 0.004736557811791721 0.0 0.0 0.2329599279066043 0.0 86-87 0.004817988605117654 0.0 0.0 0.2332042202865821 0.0 88-89 0.00483156040400531 0.0 0.0 0.2332720792810204 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 8665 0.0 56.955807 1 TATACAC 10035 0.0 50.306156 3 TTATACA 10120 0.0 49.152508 2 GGTATCA 7015 0.0 35.76015 1 TACACAT 14330 0.0 35.255577 5 ATACACA 14980 0.0 34.24666 4 ACACATC 15485 0.0 32.09685 6 GTATCAA 11750 0.0 31.808533 1 ACATCTC 16485 0.0 29.889498 8 CACATCT 16855 0.0 29.418535 7 GTGCGCT 1480 0.0 29.259405 9 TTGTGCG 1630 0.0 26.806162 7 CATCTCC 18660 0.0 26.426502 9 AACGCAG 14220 0.0 25.73401 6 ATCAACG 14295 0.0 25.571705 3 CAACGCA 14375 0.0 25.429392 5 TCAACGC 14575 0.0 25.107212 4 TATCAAC 15020 0.0 24.67571 2 ACGCAGA 15880 0.0 22.970232 7 TGCGCGA 430 3.6561687E-10 22.889692 94-95 >>END_MODULE