##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139864_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9966268 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59431745162783 31.0 31.0 34.0 30.0 34.0 2 31.801751668728958 31.0 31.0 34.0 30.0 34.0 3 31.823074193870767 31.0 31.0 34.0 30.0 34.0 4 35.57910413406503 37.0 35.0 37.0 33.0 37.0 5 35.38116645067141 37.0 35.0 37.0 33.0 37.0 6 35.3788686998985 37.0 35.0 37.0 33.0 37.0 7 35.260625642417004 37.0 35.0 37.0 32.0 37.0 8 35.22765241713348 37.0 35.0 37.0 32.0 37.0 9 36.76729664504306 39.0 37.0 39.0 32.0 39.0 10-11 36.598041112279944 38.5 35.0 39.0 32.0 39.0 12-13 36.553146674361955 38.0 35.0 39.0 32.0 39.0 14-15 37.62037063422336 39.0 36.0 41.0 32.0 41.0 16-17 37.62815464123582 39.0 36.0 41.0 32.0 41.0 18-19 37.60804866977288 39.0 36.5 41.0 32.0 41.0 20-21 37.58031118517457 39.0 36.0 41.0 32.0 41.0 22-23 37.48470921688453 39.0 36.0 41.0 32.0 41.0 24-25 37.3672365131594 39.0 36.0 40.5 32.0 41.0 26-27 37.184036592115476 39.0 36.0 40.0 31.0 41.0 28-29 37.03281437240026 39.0 36.0 40.0 31.0 41.0 30-31 36.89114535362999 39.0 36.0 40.0 30.5 41.0 32-33 37.062227316286624 39.0 36.0 40.0 31.0 41.0 34-35 37.026825010012075 39.0 36.0 40.0 31.0 41.0 36-37 36.90179969572115 39.0 35.5 40.0 30.0 41.0 38-39 36.703644664371865 38.0 35.0 40.0 30.0 41.0 40-41 36.70668699903743 38.0 35.0 40.0 30.0 41.0 42-43 36.58433466411019 38.0 35.0 40.0 30.0 41.0 44-45 36.65222072024561 38.5 35.0 40.0 30.0 41.0 46-47 36.825389329073744 39.0 35.0 40.0 30.0 41.0 48-49 36.77481872165347 39.0 35.0 40.0 30.0 41.0 50-51 36.651846118855346 39.0 35.0 40.0 30.0 41.0 52-53 36.53037060620362 38.5 35.0 40.0 30.0 41.0 54-55 36.39273426118945 38.0 35.0 40.0 30.0 41.0 56-57 36.22531250983668 38.0 34.5 40.0 29.0 41.0 58-59 36.0852928688341 38.0 34.0 40.0 29.0 41.0 60-61 35.87537715627147 38.0 34.0 40.0 28.5 41.0 62-63 35.639112273211964 37.5 34.0 40.0 28.0 41.0 64-65 35.4313483806108 37.0 34.0 40.0 28.0 41.0 66-67 35.167679143450485 37.0 33.0 39.0 28.0 41.0 68-69 34.85089640269477 36.0 33.0 39.0 28.0 40.0 70-71 34.5144479330355 36.0 33.0 39.0 28.0 40.0 72-73 34.22018842168707 35.0 32.0 38.0 27.0 40.0 74-75 33.85804554355285 35.0 32.0 37.5 26.0 39.5 76-77 32.8016533149675 34.0 31.0 36.0 26.0 39.0 78-79 33.159718400300655 34.5 31.0 36.0 26.0 39.0 80-81 33.02242489810313 34.0 31.0 36.0 26.0 38.5 82-83 32.549861184778585 34.0 31.0 36.0 26.0 37.5 84-85 32.2699163758229 34.0 31.0 35.0 26.0 37.0 86-87 32.15402252774228 34.0 31.0 35.0 26.0 36.5 88-89 31.97089524893934 34.0 31.0 35.0 26.0 36.0 90-91 31.82303959271806 34.0 31.0 35.0 26.0 36.0 92-93 31.719436705041403 34.0 30.5 35.0 25.0 35.0 94-95 31.661097188623 34.0 30.0 35.0 25.0 35.0 96-97 31.580275024945266 34.0 30.0 35.0 25.0 35.0 98-99 31.82519661190009 34.0 31.0 35.0 26.0 35.0 100-101 30.991029165014645 32.5 29.0 34.5 23.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 25.0 20 140.0 21 822.0 22 3594.0 23 11201.0 24 27125.0 25 54806.0 26 94932.0 27 145944.0 28 204699.0 29 268311.0 30 337905.0 31 413818.0 32 503553.0 33 623519.0 34 787392.0 35 1016518.0 36 1379417.0 37 1776691.0 38 1576908.0 39 724580.0 40 14364.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.85011962351404 23.89417984746146 15.293638501392898 24.962062027631607 2 13.821684286615335 23.92888097589384 40.18111879733892 22.068315940151912 3 16.361811663101975 28.523565691791553 32.56040275055818 22.554219894548293 4 11.692069689476542 20.579418494465532 39.35476148142916 28.373750334628774 5 11.586262781614943 39.227682819687374 37.23039557033786 11.955658828359823 6 27.821096121436828 40.697370369731175 18.90862256563841 12.57291094319358 7 24.173070601753835 33.56920564447996 24.635249624031786 17.62247412973442 8 23.412304385151995 37.91044952834903 22.16312063853792 16.51412544796106 9 24.628055356327966 16.066615908783508 21.64525377001702 37.660074964871505 10-11 23.060076249203814 27.56214763640713 30.22061016219913 19.157165952189928 12-13 23.879249484360646 24.950202021458782 29.94239669252322 21.22815180165735 14-15 20.975268776637353 26.500842642401345 27.112811937226656 25.41107664373465 16-17 20.914055087392015 29.570656728470674 27.922353596100713 21.5929345880366 18-19 20.808066486837458 28.86955137920734 29.408773100633013 20.913609033322185 20-21 21.62655086195024 28.13864455600011 29.018508869612074 21.216295712437578 22-23 21.26072240517494 28.546176948439715 28.793409005234594 21.39969164115075 24-25 21.12919626931578 28.61603915525821 29.1460331990056 21.10873137642041 26-27 21.314892332828148 28.72885876358593 29.09242753723087 20.863821366355054 28-29 21.12396432835538 28.553857991700905 29.196283165707914 21.1258945142358 30-31 21.51684811853171 28.64942855063702 28.915843886515386 20.917879444315886 32-33 21.314120161374312 28.408191489216556 29.05957475644252 21.218113592966613 34-35 20.97570821934329 28.84861149019633 29.468825653948443 20.706854636511938 36-37 21.350885692635398 28.540655990510448 29.043556070479852 21.0649022463743 38-39 20.968161970716356 28.45122848311635 29.255107286518513 21.32550225964879 40-41 21.19556945485456 28.346163555902255 29.280356223056074 21.17791076618711 42-43 21.405640192811486 28.355019915278522 29.044745395821607 21.19459449608839 44-45 21.141642452136363 28.85143222966025 28.774354615467697 21.232570702735693 46-47 21.572307864793064 28.300497545083577 28.3507539658139 21.776440624309462 48-49 21.469875812006897 28.314289116351272 28.474992613107652 21.740842458534175 50-51 21.11254143493799 28.455940266814107 28.682941269159095 21.748577029088807 52-53 21.262694181094442 28.521487809341366 28.84243077901509 21.373387230549103 54-55 21.269588580541807 28.526967478681907 28.460916229050078 21.742527711726208 56-57 21.671548335056045 28.815869244461588 28.0234369125125 21.489145507969862 58-59 21.205594080410066 29.137365327440946 28.58072053121748 21.076320060931504 60-61 21.527446430563074 29.464558013796736 27.82111209948547 21.186883456154714 62-63 21.275881432944555 29.548526334214298 27.82826194204091 21.347330290800237 64-65 21.249850874299987 29.24576078443819 28.051720242570276 21.452668098691547 66-67 21.467431238462936 29.035091874067113 27.944149732839378 21.553327154630573 68-69 21.507134087463893 28.83265660108048 28.113254906730223 21.546954404725405 70-71 21.44111041768032 28.56309202539751 28.228650642369168 21.767146914553003 72-73 21.497816631697777 28.615505297286063 28.30111676758668 21.585561303429476 74-75 21.397060914363685 28.73243695666887 28.183049545595594 21.68745258337185 76-77 21.371201787048737 28.76479903238451 28.13966569395192 21.724333486614835 78-79 21.44011569806617 28.795162138119352 28.06056772615819 21.704154437656285 80-81 21.392381531522105 28.708996126710513 28.13770616574972 21.760916176017666 82-83 21.394615707283364 28.633198570394562 28.295343588114104 21.67684213420797 84-85 21.663691581124393 28.625977786332385 28.088757555872473 21.621573076670746 86-87 21.313156828723738 28.7537284816595 28.189425733888807 21.743688955727954 88-89 21.476951615268316 28.628751218674374 28.226527875001068 21.667769291056242 90-91 21.466541996741697 28.616683609192687 28.316678526025612 21.60009586804 92-93 21.401933862470468 28.65718319013738 28.26269265983371 21.678190287558436 94-95 21.0928370974325 28.790363812908204 28.404622670944523 21.712176418714773 96-97 20.968374553090396 28.811898137142762 28.56761107468896 21.65211623507789 98-99 21.006630094405978 29.471347168926588 28.670073545928236 20.851949190739198 100-101 23.392131387636454 37.38520400264721 29.892842795739643 9.329821813976695 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2203.0 1 2203.5 2 3570.5 3 5111.0 4 6592.0 5 9781.0 6 12071.0 7 13345.0 8 13769.5 9 12769.0 10 11448.0 11 10459.5 12 11995.0 13 17301.5 14 28678.5 15 43586.0 16 54141.0 17 57716.5 18 57547.5 19 56485.0 20 55125.0 21 54860.5 22 57180.5 23 64739.0 24 78419.5 25 98471.0 26 125017.0 27 151692.0 28 178397.0 29 206910.0 30 231162.0 31 254360.5 32 281200.5 33 307141.0 34 334706.0 35 361107.0 36 385278.5 37 406742.5 38 418069.0 39 424792.0 40 433475.5 41 438718.5 42 440641.0 43 444474.5 44 448727.0 45 454183.5 46 467126.0 47 483696.5 48 477169.0 49 452536.5 50 428852.0 51 400940.0 52 368598.5 53 334494.0 54 300447.0 55 268004.0 56 238736.0 57 208450.5 58 177085.5 59 150338.5 60 125142.5 61 98946.0 62 75592.0 63 57414.0 64 43114.5 65 32005.5 66 23618.0 67 17759.5 68 13502.5 69 9900.0 70 7261.5 71 5380.5 72 3752.0 73 2620.0 74 1937.0 75 1364.5 76 928.0 77 652.5 78 463.0 79 332.5 80 250.0 81 179.5 82 130.0 83 87.0 84 57.5 85 37.5 86 24.0 87 19.0 88 13.5 89 7.5 90 4.5 91 4.0 92 3.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0010234523093298313 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.001404738463786043 18-19 0.0014549076946355447 20-21 1.5051734316017584E-5 22-23 0.0026846692389645163 24-25 1.505876532580743E-4 26-27 0.001084788418798841 28-29 4.2725286161400446E-4 30-31 1.3093625313120202E-4 32-33 0.0011066480237742356 34-35 0.01656162322591481 36-37 0.03002936681899132 38-39 0.005685269667676624 40-41 0.003519082590832142 42-43 0.0074051197899608024 44-45 0.005233853721815858 46-47 0.003036369019758506 48-49 0.001433257076706816 50-51 2.0129614588334285E-4 52-53 5.1005372565910276E-5 54-55 0.004453792619921958 56-57 0.011751288102880338 58-59 0.009843164782889944 60-61 0.007990987713282152 62-63 0.001976271444392154 64-65 0.0014175365072101175 66-67 0.0013313049707343325 68-69 0.0 70-71 0.0 72-73 2.976450593490719E-4 74-75 3.442523998006916E-4 76-77 1.4021785227053718E-5 78-79 3.7152190303807036E-4 80-81 0.00231185746589208 82-83 0.004225058036798094 84-85 0.011574779582636734 86-87 0.007483437449314685 88-89 0.06935460930462523 90-91 0.0 92-93 0.0 94-95 7.8658409165138E-5 96-97 0.007046686174410889 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 396.0 20-21 1359.0 22-23 2622.0 24-25 4546.0 26-27 7241.0 28-29 14381.0 30-31 31365.0 32-33 42739.0 34-35 60318.0 36-37 91394.0 38-39 107491.0 40-41 107812.0 42-43 118638.0 44-45 135588.0 46-47 137238.0 48-49 130267.0 50-51 120840.0 52-53 119305.0 54-55 132355.0 56-57 142002.0 58-59 147865.0 60-61 153298.0 62-63 148616.0 64-65 153546.0 66-67 157878.0 68-69 137453.0 70-71 136187.0 72-73 129103.0 74-75 130473.0 76-77 131004.0 78-79 140554.0 80-81 146933.0 82-83 140432.0 84-85 141044.0 86-87 149533.0 88-89 162827.0 90-91 178361.0 92-93 196216.0 94-95 250885.0 96-97 309409.0 98-99 791858.0 100-101 4424896.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.94049867554934 #Duplication Level Percentage of deduplicated Percentage of total 1 89.614314415888 75.2227024053711 2 6.724408555529325 11.289004148985239 3 1.886673161200156 4.751048579667485 4 0.7968517893565252 2.675525462763621 5 0.37894125642046594 1.5904259016336562 6 0.2060217776664308 1.0376142453206014 7 0.12336542959794433 0.7248748975842375 8 0.07594369789619423 0.5099801498137448 9 0.05612815476220617 0.4240282770430196 >10 0.135640832115094 1.593538391022318 >50 0.001156695017728838 0.06405610098882135 >100 5.15252637641402E-4 0.07661028192261438 >500 1.9490958447672232E-5 0.015019221484775329 >1k 1.949095382578554E-5 0.025571936398771256 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 4.013538467960123E-5 0.0 5 0.0 0.0 0.0 8.027076935920246E-5 0.0 6 0.0 0.0 0.0 8.027076935920246E-5 0.0 7 0.0 0.0 0.0 8.027076935920246E-5 0.0 8 0.0 0.0 0.0 8.027076935920246E-5 0.0 9 0.0 0.0 0.0 2.1071076956790646E-4 0.0 10-11 1.0033846169900308E-5 0.0 0.0 2.1071076956790646E-4 0.0 12-13 2.0067692339800615E-5 0.0 0.0 2.2074461573780676E-4 0.0 14-15 2.0067692339800615E-5 0.0 0.0 2.4582923116255755E-4 0.0 16-17 2.0067692339800615E-5 0.0 0.0 2.508461542475077E-4 0.0 18-19 2.508461542475077E-5 0.0 0.0 3.0101538509700926E-4 0.0 20-21 3.0101538509700924E-5 0.0 0.0 3.5118461594651075E-4 0.0 22-23 4.013538467960123E-5 0.0 0.0 4.013538467960123E-4 0.0 24-25 4.013538467960123E-5 0.0 0.0 4.0637076988096245E-4 0.0 26-27 4.013538467960123E-5 0.0 0.0 4.465061545605637E-4 0.0 28-29 4.013538467960123E-5 0.0 0.0 8.428430782716259E-4 0.0 30-31 4.013538467960123E-5 0.0 0.0 0.002056938464829563 0.0 32-33 4.515230776455138E-5 0.0 0.0 0.0046858061613434445 0.0 34-35 5.0169230849501536E-5 0.0 0.0 0.008413380013461407 0.0 36-37 5.0169230849501536E-5 0.0 0.0 0.013921961560736676 0.0 38-39 5.0169230849501536E-5 0.0 0.0 0.02254103542068104 0.0 40-41 5.0169230849501536E-5 0.0 0.0 0.032710338513875004 0.0 42-43 5.0169230849501536E-5 0.0 0.0 0.041515038527962525 0.0 44-45 5.0169230849501536E-5 0.0 0.0 0.05148868162084343 0.0 46-47 5.0169230849501536E-5 0.0 0.0 0.06301757087005888 0.0 48-49 5.0169230849501536E-5 0.0 0.0 0.07384409088738131 0.0 50-51 5.0169230849501536E-5 0.0 0.0 0.0846856616739586 0.0 52-53 5.0169230849501536E-5 0.0 0.0 0.0944586278434415 0.0 54-55 5.0169230849501536E-5 0.0 0.0 0.10502426786034652 0.0 56-57 5.0169230849501536E-5 0.0 0.0 0.11632237864765427 0.0 58-59 5.0169230849501536E-5 0.0 0.0 0.12651174943318802 0.0 60-61 5.0169230849501536E-5 0.0 0.0 0.13607400483310303 0.0 62-63 5.0169230849501536E-5 0.0 0.0 0.14476833253932164 0.0 64-65 5.0169230849501536E-5 0.0 0.0 0.15464163717050355 0.0 66-67 5.0169230849501536E-5 0.0 0.0 0.16432931564754227 0.0 68-69 5.0169230849501536E-5 0.0 0.0 0.174222687971064 0.0 70-71 5.0169230849501536E-5 0.0 0.0 0.1844572110643623 0.0 72-73 5.0169230849501536E-5 0.0 0.0 0.19232374646156414 0.0 74-75 5.0169230849501536E-5 0.0 0.0 0.19928723570347495 0.0 76-77 5.518615393445169E-5 0.0 0.0 0.20594970956028877 0.0 78-79 6.020307701940185E-5 0.0 0.0 0.21207035572392796 0.0 80-81 6.020307701940185E-5 0.0 0.0 0.21594342034550948 0.0 82-83 6.020307701940185E-5 0.0 0.0 0.2188482188116956 0.0 84-85 6.020307701940185E-5 0.0 0.0 0.22176305112405165 0.0 86-87 6.020307701940185E-5 0.0 0.0 0.22233999727882092 0.0 88-89 6.020307701940185E-5 0.0 1.0033846169900308E-5 0.22255070804838883 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 12945 0.0 39.431393 1 GGTATCA 11360 0.0 35.974323 1 TATACAC 17940 0.0 31.498396 3 GTATCAA 18425 0.0 28.907202 1 TTATACA 18975 0.0 28.340614 2 ATCAACG 22835 0.0 22.873398 3 ACACATC 22775 0.0 22.864109 6 TACACAT 24275 0.0 22.691061 5 CAACGCA 23085 0.0 22.522768 5 ACATCTC 23240 0.0 22.406631 8 TCAACGC 23320 0.0 22.329763 4 AACGCAG 24025 0.0 21.69099 6 TATCAAC 24635 0.0 21.475594 2 CACATCT 24620 0.0 21.022018 7 CATCTCC 25950 0.0 19.975113 9 ATACACA 30185 0.0 19.796343 4 ACGCAGA 27685 0.0 18.766195 7 TACATGG 25205 0.0 18.648989 2 CGCAGAG 27890 0.0 18.614058 8 GTACATG 26190 0.0 18.431448 1 >>END_MODULE