##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139863_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14992646 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.79063882386071 31.0 31.0 34.0 30.0 34.0 2 31.959341799973135 31.0 31.0 34.0 30.0 34.0 3 32.69895514107383 34.0 31.0 34.0 30.0 37.0 4 35.56394875194145 37.0 35.0 37.0 33.0 37.0 5 35.4096723820465 37.0 35.0 37.0 33.0 37.0 6 35.39465195136336 37.0 35.0 37.0 33.0 37.0 7 35.35218072913881 37.0 35.0 37.0 32.0 37.0 8 35.5913974091031 37.0 35.0 37.0 32.0 39.0 9 36.77217337086462 39.0 37.0 39.0 32.0 39.0 10-11 36.639299060352656 39.0 35.0 39.0 32.0 39.0 12-13 36.74077084191809 39.0 35.5 39.0 32.0 39.5 14-15 37.67440864007594 39.0 37.0 41.0 32.0 41.0 16-17 37.67025470353933 39.0 37.0 41.0 32.0 41.0 18-19 37.6441526732506 39.0 37.0 41.0 32.0 41.0 20-21 37.605993348242066 39.0 36.5 41.0 32.0 41.0 22-23 37.5123929844477 39.0 36.0 41.0 32.0 41.0 24-25 37.38378060624031 39.0 36.0 41.0 32.0 41.0 26-27 37.196162980325006 39.0 36.0 40.0 31.0 41.0 28-29 37.05673285268297 39.0 36.0 40.0 31.0 41.0 30-31 36.94096239455096 39.0 36.0 40.0 31.0 41.0 32-33 37.10155971521258 39.0 36.0 40.0 31.0 41.0 34-35 37.07690823174343 39.0 36.0 40.0 31.0 41.0 36-37 36.937860181068245 39.0 35.5 40.0 30.5 41.0 38-39 36.77792408382187 39.0 35.0 40.0 30.0 41.0 40-41 36.74987582224588 38.5 35.0 40.0 30.0 41.0 42-43 36.632190680503264 38.0 35.0 40.0 30.0 41.0 44-45 36.728263518539094 38.5 35.0 40.0 30.0 41.0 46-47 36.8495608118765 39.0 35.0 40.0 30.0 41.0 48-49 36.784223541308194 39.0 35.0 40.0 30.0 41.0 50-51 36.63193942509663 39.0 35.0 40.0 30.0 41.0 52-53 36.50310601456851 38.0 35.0 40.0 30.0 41.0 54-55 36.35652083804784 38.0 35.0 40.0 30.0 41.0 56-57 36.17500661090722 38.0 34.0 40.0 29.0 41.0 58-59 36.03278087761349 38.0 34.0 40.0 29.0 41.0 60-61 35.81155921439751 38.0 34.0 40.0 28.5 41.0 62-63 35.55361599691976 37.0 34.0 40.0 28.0 41.0 64-65 35.32041523806658 37.0 34.0 39.5 28.0 41.0 66-67 35.041561058308986 36.0 33.0 39.0 28.0 40.5 68-69 34.70738268164699 36.0 33.0 39.0 28.0 40.0 70-71 34.3699721184915 35.5 32.5 38.5 27.5 40.0 72-73 34.06265631159199 35.0 32.0 38.0 27.0 40.0 74-75 33.587771816940865 35.0 31.5 37.0 26.0 39.0 76-77 32.75160326581589 34.0 31.0 36.0 26.0 39.0 78-79 33.03948861116099 34.0 31.0 36.0 26.0 39.0 80-81 32.88264455488438 34.0 31.0 36.0 26.0 37.5 82-83 32.439941042977885 34.0 31.0 35.5 26.0 37.0 84-85 32.22770284097743 34.0 31.0 35.0 26.0 37.0 86-87 32.112474446096414 34.0 31.0 35.0 26.0 36.0 88-89 31.94712152059375 34.0 31.0 35.0 26.0 36.0 90-91 31.81809206756806 34.0 31.0 35.0 25.5 35.5 92-93 31.731659051246947 34.0 31.0 35.0 25.0 35.0 94-95 31.684671991570504 34.0 31.0 35.0 25.0 35.0 96-97 31.64441022958987 34.0 30.0 35.0 25.0 35.0 98-99 31.86896069801596 34.0 31.0 35.0 26.0 35.0 100-101 30.829070560718932 32.5 28.5 34.5 22.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 1.0 18 7.0 19 29.0 20 237.0 21 1225.0 22 5203.0 23 16177.0 24 40391.0 25 81484.0 26 141144.0 27 218272.0 28 306664.0 29 401982.0 30 505543.0 31 619586.0 32 755482.0 33 936377.0 34 1187798.0 35 1531526.0 36 2077213.0 37 2678642.0 38 2343551.0 39 1101827.0 40 42284.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50310303393311 0.009691457477146202 26.49493066072328 31.992274847866465 2 14.455231880593447 26.679208011662332 36.07048276796787 22.79507733977636 3 15.506852260805518 25.50024702115564 34.34912710187257 24.643773616166275 4 12.806285161405132 25.4449814929266 36.89765635765695 24.85107698801132 5 16.720250714917167 37.06875357425234 32.903918361041804 13.30707734978869 6 27.291613501712774 38.32522958255667 20.489478641728752 13.8936782740018 7 25.104434534104254 32.8417212011809 23.537746439154237 18.516097825560614 8 24.01955598764888 32.056682989780455 22.398261120818834 21.525499901751832 9 23.10093895367102 20.179486662994645 24.282471553053412 32.43710283028093 10-11 24.483800257806394 26.073172807521765 29.093860416633593 20.349166518038245 12-13 24.449663521702572 24.149689787913353 28.91346864322682 22.48717804715725 14-15 21.938693037745562 26.654718134465543 26.357965792073994 25.0486230357149 16-17 21.460876296729158 28.805421374902927 27.688878116046943 22.044824212320975 18-19 21.535744014983553 28.227873514918183 28.88332386189306 21.353058608205203 20-21 22.16707568800952 27.66889719794615 28.537535992193856 21.62649112185047 22-23 22.018515151565698 27.55513595292147 28.315564903946395 22.110783991566432 24-25 21.921302729432483 27.763086867761388 28.56958078614511 21.74602961666102 26-27 21.82552671200496 28.046240425356938 28.397120769810535 21.731112092827566 28-29 21.737772643467913 27.659496104956048 28.451726504530388 22.15100474704565 30-31 21.896638998087575 27.84926515530729 28.483689256410035 21.770406590195098 32-33 21.643735249852625 27.924416060528458 28.593409813960776 21.83843887565815 34-35 21.69333566865501 27.73405843157251 28.54167662471927 22.030929275053207 36-37 21.841643261952314 27.951659764968916 28.598418461759845 21.60827851131892 38-39 21.656948846428193 27.954737066142222 28.674427036328808 21.713887051100773 40-41 21.904494352159283 27.63099970270591 28.47686513823619 21.98764080689861 42-43 22.04347286716469 27.710378896096927 28.350912740350825 21.895235496387556 44-45 21.75882904340948 28.20042971001584 28.133828856588323 21.906912389986356 46-47 22.080866591514415 27.714671747416226 27.74753175393263 22.45692990713673 48-49 21.969407248967798 27.78629008836208 28.0654810977018 22.17882156496832 50-51 21.916744497232614 28.00371923096333 27.71625828194152 22.36327798986254 52-53 21.95505459875633 27.85846988038839 27.9663204832622 22.220155037593077 54-55 21.88819208641044 28.041831596854323 27.890404121573965 22.17957219516127 56-57 22.159549852975598 28.317424253048557 27.317661422921613 22.205364471054235 58-59 22.0232694289006 28.164090748859167 27.82399927741981 21.988640544820427 60-61 22.180358951844532 28.383165150000885 27.423579372896807 22.012896525257776 62-63 22.063512270228465 28.472086476392278 27.406590308008372 22.057810945370882 64-65 21.98297419845802 28.217245469275387 27.429537756090173 22.37024257617642 66-67 22.02615222211036 28.16711974804498 27.503315879723022 22.303412150121645 68-69 22.051475295502403 28.091161650427647 27.586958628247814 22.27040442582214 70-71 22.1356784501391 27.746318767110665 27.62101330747389 22.496989475276344 72-73 22.07646130244347 27.986939991551235 27.606678969250954 22.32991973675434 74-75 22.033289453507255 28.01191537952083 27.67591412923311 22.278881037738806 76-77 22.17821385404537 27.8662454122017 27.49172722314756 22.46381351060537 78-79 21.980683210882827 27.83479022657236 27.68055689793154 22.503969664613273 80-81 22.012016827525528 27.946332138619965 27.64463942546439 22.397011608390113 82-83 22.13829898883246 27.742373309267354 27.687079939065246 22.43224776283494 84-85 22.21815286799216 27.75330614354144 27.66321693559209 22.365324052874318 86-87 21.98417955537301 27.99940219284121 27.647003348649374 22.369414903136402 88-89 22.11501174144421 27.693678371278256 27.68511374059748 22.50619614668005 90-91 22.118955193346135 27.747868447609243 27.74542400679415 22.387752352250477 92-93 21.9900850132995 27.735914426733327 27.836008282727803 22.437992277239374 94-95 21.92217383753473 27.62878001820348 27.919319856539172 22.529726287722625 96-97 21.618059111546735 27.853431710019883 28.1408358897764 22.38767328865698 98-99 21.915488103736628 28.948918923037674 28.23370296460389 20.901890008621805 100-101 24.845829442312652 36.565183442518375 29.421274538765207 9.167712576403769 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2165.0 1 2182.5 2 3918.0 3 5896.5 4 7882.5 5 12040.5 6 15057.0 7 17109.5 8 18280.5 9 17584.0 10 16169.0 11 14904.5 12 16780.5 13 22799.0 14 36775.0 15 57721.0 16 74809.5 17 82114.5 18 81911.5 19 78781.0 20 74955.0 21 72450.0 22 73864.0 23 81338.0 24 96091.5 25 117080.0 26 143895.5 27 174529.0 28 208473.5 29 249188.0 30 289334.0 31 325704.0 32 363479.5 33 400292.5 34 436379.5 35 474945.0 36 515130.5 37 554235.5 38 584209.0 39 602773.0 40 617721.0 41 628953.0 42 636864.0 43 649418.0 44 665194.5 45 680726.0 46 692395.5 47 700946.0 48 712787.5 49 703672.5 50 676695.5 51 655795.0 52 629055.0 53 587483.5 54 539557.5 55 488984.0 56 440889.5 57 395084.0 58 345123.5 59 294621.0 60 244784.5 61 197217.5 62 156530.5 63 123352.0 64 94785.0 65 71382.0 66 52794.0 67 39741.5 68 30084.5 69 22253.5 70 16630.5 71 12315.0 72 8946.0 73 6326.5 74 4443.0 75 3106.5 76 2162.5 77 1487.5 78 1047.5 79 768.0 80 570.5 81 427.0 82 336.0 83 243.0 84 164.5 85 106.0 86 62.0 87 39.0 88 23.5 89 18.0 90 15.0 91 12.5 92 9.0 93 4.0 94 1.5 95 2.0 96 1.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 4.068661395726945E-4 2 6.803335448592597E-4 3 2.0009810142919402E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 6.336439878591144E-5 16-17 0.0014206965201472776 18-19 0.0013740069631471322 20-21 1.2674025628414044E-4 22-23 0.002411915623785598 24-25 2.1357224948976257E-4 26-27 0.0010484096477059778 28-29 5.247173277570253E-4 30-31 2.779777859578416E-4 32-33 0.0026752043775485016 34-35 0.01678582519809047 36-37 0.028856378933761393 38-39 0.005647098547918897 40-41 0.004915863690152312 42-43 0.006520290592769947 44-45 0.004629391913181786 46-47 0.0026534238553995912 48-49 0.001193939242116668 50-51 2.005252498980942E-4 52-53 3.348451655261928E-4 54-55 0.005554003240470984 56-57 0.011094073169596073 58-59 0.00954319549885578 60-61 0.006539790459987555 62-63 0.001999496094405862 64-65 0.0012417467817545178 66-67 0.00108726548726456 68-69 0.0 70-71 6.11650696248541E-5 72-73 4.1798967067483187E-4 74-75 3.9365447091934156E-4 76-77 1.3358029412446155E-4 78-79 5.726742653657073E-4 80-81 0.002539194503305049 82-83 0.0048534077600803985 84-85 0.011948518668411522 86-87 0.015315568873066659 88-89 0.05767986997636491 90-91 0.0 92-93 4.9858548527906964E-5 94-95 8.215224638136589E-4 96-97 0.006315182240959609 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 772.0 20-21 2768.0 22-23 4425.0 24-25 7048.0 26-27 12282.0 28-29 25355.0 30-31 47576.0 32-33 67053.0 34-35 97321.0 36-37 141506.0 38-39 155458.0 40-41 157345.0 42-43 173636.0 44-45 199335.0 46-47 199934.0 48-49 191686.0 50-51 175752.0 52-53 178305.0 54-55 195275.0 56-57 206897.0 58-59 212593.0 60-61 210752.0 62-63 199268.0 64-65 207540.0 66-67 220062.0 68-69 207112.0 70-71 203334.0 72-73 193407.0 74-75 195049.0 76-77 199330.0 78-79 213149.0 80-81 218676.0 82-83 210653.0 84-85 212563.0 86-87 226112.0 88-89 249670.0 90-91 274981.0 92-93 306118.0 94-95 387928.0 96-97 545278.0 98-99 1693650.0 100-101 6165692.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.28262008441835 #Duplication Level Percentage of deduplicated Percentage of total 1 88.31976093889826 71.78861574343118 2 7.205061817792909 11.712926048408194 3 2.1912740508682127 5.34337488532696 4 0.9756878356075362 3.172258546507032 5 0.4843461433006689 1.9684461777630762 6 0.29229832403382505 1.425526417425217 7 0.1591814816429215 0.9057081527799481 8 0.10171621119570208 0.6614208120837369 9 0.07571181875687365 0.553864949992377 >10 0.1915129963874975 2.188674294199356 >50 0.0026504766124437495 0.1487972864583807 >100 7.6770452953059E-4 0.11492168048574146 >500 3.020037365210131E-5 0.015465005138777101 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 1.3339873428612934E-5 3 0.0 0.0 0.0 0.0 1.3339873428612934E-5 4 0.0 0.0 0.0 2.6679746857225868E-5 1.3339873428612934E-5 5 0.0 0.0 0.0 2.6679746857225868E-5 1.3339873428612934E-5 6 0.0 0.0 0.0 4.0019620285838803E-5 3.3349683571532334E-5 7 0.0 0.0 0.0 4.0019620285838803E-5 3.3349683571532334E-5 8 0.0 0.0 0.0 4.0019620285838803E-5 3.3349683571532334E-5 9 0.0 0.0 0.0 1.0004905071459701E-4 3.3349683571532334E-5 10-11 0.0 0.0 0.0 1.0004905071459701E-4 3.3349683571532334E-5 12-13 0.0 0.0 0.0 1.2005886085751641E-4 3.668465192868557E-5 14-15 0.0 0.0 0.0 1.56743512786202E-4 7.670427221452438E-5 16-17 0.0 0.0 0.0 1.9009319635773434E-4 8.337420892883084E-5 18-19 0.0 0.0 0.0 2.5012262678649253E-4 8.670917728598407E-5 20-21 6.669936714306467E-6 0.0 0.0 3.3683180407247657E-4 9.004414564313731E-5 22-23 6.669936714306467E-6 3.3349683571532335E-6 0.0 4.0353117121554125E-4 1.3006376592897612E-4 24-25 6.669936714306467E-6 6.669936714306467E-6 0.0 5.269250004302109E-4 1.6674841785766168E-4 26-27 6.669936714306467E-6 6.669936714306467E-6 0.0 7.803825955738567E-4 1.7341835457196814E-4 28-29 1.3339873428612934E-5 6.669936714306467E-6 0.0 0.0018142227862913592 1.7341835457196814E-4 30-31 1.3339873428612934E-5 6.669936714306467E-6 0.0 0.0036484553827256377 1.7341835457196814E-4 32-33 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.007116822474165001 1.9342816471488755E-4 34-35 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.012256008712538133 2.0676803814350048E-4 36-37 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.019436195585489046 2.167729432149602E-4 38-39 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.029447770593663054 2.301128166435731E-4 40-41 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.03982285715276676 2.4011772171503282E-4 42-43 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.04898068026150955 2.4345269007218607E-4 44-45 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.05995606112490083 2.467876584293393E-4 46-47 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.07115488486822139 2.5012262678649253E-4 48-49 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.08204022158596955 2.5345759514364575E-4 50-51 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.09269878045543128 2.5345759514364575E-4 52-53 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.10285709407132004 2.901422470723313E-4 54-55 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.11333556464949548 3.268268990010169E-4 56-57 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.1234538586450984 3.268268990010169E-4 58-59 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.1323382143485546 3.268268990010169E-4 60-61 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.1409324278049385 3.268268990010169E-4 62-63 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.14905641072296377 3.4016677242962984E-4 64-65 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.15725376294484641 3.4016677242962984E-4 66-67 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.16556783905922945 3.4016677242962984E-4 68-69 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.1745422389083288 3.4350174078678306E-4 70-71 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.1830430732507124 3.468367091439363E-4 72-73 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.19054008211759285 3.801863927154686E-4 74-75 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.19730339794589963 3.801863927154686E-4 76-77 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.2035564636155619 3.801863927154686E-4 78-79 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.20911585586693637 3.801863927154686E-4 80-81 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.21295106947766257 3.901912977869283E-4 82-83 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.21588250666360026 3.9352626614408154E-4 84-85 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.21826367407060768 3.9352626614408154E-4 86-87 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.21866053530510893 3.968612345012348E-4 88-89 1.3339873428612934E-5 1.3339873428612934E-5 0.0 0.21877392422925213 4.0019620285838803E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20435 0.0 32.925213 1 CTTATAC 16195 0.0 32.30487 1 TATACAC 20815 0.0 27.46084 3 GTATCAA 31010 0.0 26.574135 1 TTATACA 21915 0.0 24.597466 2 ATCAACG 34385 0.0 23.145847 3 ACACATC 24110 0.0 21.847486 6 CAACGCA 36520 0.0 21.781847 5 TCAACGC 36740 0.0 21.759457 4 ACGCAGA 36495 0.0 21.611864 7 AACGCAG 36650 0.0 21.455479 6 TATCAAC 39600 0.0 20.508907 2 ACATCTC 26205 0.0 19.979673 8 TACACAT 28170 0.0 19.854176 5 GTACATG 40705 0.0 19.69868 1 ATACACA 31845 0.0 19.382816 4 TACATGG 40880 0.0 19.119076 2 ACATGGG 40475 0.0 18.731573 3 CGCAGAG 43250 0.0 18.245594 8 CACATCT 29450 0.0 17.764698 7 >>END_MODULE