##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139862_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9183047 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19854129027108 33.0 31.0 34.0 31.0 34.0 2 32.44541882449257 34.0 31.0 34.0 31.0 34.0 3 32.5442579135226 34.0 31.0 34.0 31.0 34.0 4 36.131338759346434 37.0 35.0 37.0 35.0 37.0 5 35.829065015130595 37.0 35.0 37.0 35.0 37.0 6 35.83000838392747 37.0 35.0 37.0 35.0 37.0 7 35.817760161741525 37.0 35.0 37.0 35.0 37.0 8 35.80782587740213 37.0 35.0 37.0 35.0 37.0 9 37.61279235530429 39.0 37.0 39.0 35.0 39.0 10-11 37.45721115224609 39.0 37.0 39.0 35.0 39.0 12-13 37.44679728852526 39.0 37.0 39.0 35.0 39.0 14-15 38.71003709335257 40.0 38.0 41.0 35.0 41.0 16-17 38.63645465388558 40.0 38.0 41.0 35.0 41.0 18-19 38.678520266748066 40.0 38.0 41.0 35.0 41.0 20-21 38.71065203792355 40.0 38.0 41.0 35.0 41.0 22-23 38.64371305578116 40.0 38.0 41.0 35.0 41.0 24-25 38.59827563452855 40.0 38.0 41.0 35.0 41.0 26-27 38.43839503891475 40.0 38.0 41.0 34.0 41.0 28-29 38.32827984539601 40.0 38.0 41.0 34.0 41.0 30-31 38.23681477867093 40.0 38.0 41.0 34.0 41.0 32-33 38.11361039222901 40.0 37.5 41.0 34.0 41.0 34-35 38.036582688569894 40.0 37.0 41.0 34.0 41.0 36-37 37.99208296960238 40.0 37.0 41.0 33.5 41.0 38-39 37.8947866486924 40.0 37.0 41.0 33.0 41.0 40-41 37.833520931685456 40.0 37.0 41.0 33.0 41.0 42-43 37.81560044384513 40.0 37.0 41.0 33.0 41.0 44-45 37.74057335484492 39.0 37.0 41.0 33.0 41.0 46-47 37.631940241127964 39.0 37.0 40.0 33.0 41.0 48-49 37.636051982438175 39.0 37.0 40.0 33.0 41.0 50-51 37.48427112932608 39.0 36.0 40.0 32.5 41.0 52-53 37.2873900490931 39.0 36.0 40.0 32.0 41.0 54-55 37.05742254159239 39.0 35.5 40.0 31.5 41.0 56-57 36.886422769896484 39.0 35.0 40.0 31.0 41.0 58-59 36.70565606296619 38.0 35.0 40.0 31.0 41.0 60-61 36.442415622258785 38.0 35.0 40.0 31.0 41.0 62-63 36.289302857304605 38.0 35.0 40.0 31.0 41.0 64-65 36.020537198731276 37.0 34.0 40.0 30.5 41.0 66-67 35.809579351219085 37.0 34.0 39.0 30.0 41.0 68-69 35.570497626080574 36.0 34.0 39.0 30.0 40.5 70-71 35.144336112761586 36.0 34.0 39.0 30.0 40.0 72-73 34.88594609732647 35.0 34.0 38.5 29.0 40.0 74-75 34.52636131249387 35.0 33.5 37.5 29.0 39.5 76-77 32.63484422911966 33.5 31.0 35.5 27.0 38.5 78-79 33.82973097716877 35.0 33.0 36.0 29.0 39.0 80-81 33.868347389341906 35.0 33.0 36.0 29.0 38.5 82-83 33.61303196649042 35.0 33.0 36.0 29.0 37.0 84-85 33.37942363428484 35.0 33.0 35.0 29.0 37.0 86-87 33.206384264616574 35.0 33.0 35.0 29.0 36.5 88-89 33.070708331117004 34.5 33.0 35.0 29.0 36.0 90-91 33.03926909238479 34.0 33.0 35.0 29.0 36.0 92-93 32.92406995453088 34.0 32.5 35.0 29.0 35.5 94-95 32.8122883816647 34.0 32.0 35.0 29.0 35.0 96-97 32.877968411629254 34.0 32.0 35.0 29.0 35.0 98-99 32.99380188290077 34.0 32.0 35.0 29.0 35.0 100-101 31.77001545278607 33.0 31.0 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 2.0 18 14.0 19 27.0 20 88.0 21 306.0 22 1085.0 23 3072.0 24 7615.0 25 16477.0 26 29382.0 27 48434.0 28 73622.0 29 105603.0 30 146606.0 31 201024.0 32 278129.0 33 400063.0 34 607756.0 35 954165.0 36 1571082.0 37 2232767.0 38 1898528.0 39 600339.0 40 6859.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.94693765587827 20.301028623723695 13.07405918754418 24.677974532853856 2 15.419293266148143 21.221606154693205 39.97405634077667 23.38504423838198 3 18.07920500322824 26.812497964996524 30.765125370915115 24.343171660860126 4 12.41325455483349 18.25131680149301 37.7458048510478 31.589623792625694 5 12.883109495138163 38.17354958544805 35.61999628227973 13.323344637134058 6 29.863522799033298 37.552274589161996 18.63726654004863 13.946936071756078 7 26.19926697532965 32.59531395189418 23.01904803492784 18.186371037848332 8 25.487760217278645 35.22762107174231 21.453979272892756 17.83063943808629 9 26.201515945963454 15.345356578346289 20.480722897470283 37.97240457821997 10-11 24.591669922678964 26.02543696991793 28.657291311391077 20.72560179601203 12-13 25.511167316261947 23.768348459883946 28.301494970257895 22.418989253596212 14-15 22.72626395138781 24.91969713320644 25.878491093424653 26.475547821981095 16-17 22.364847963862104 27.893519438591568 26.662996497785542 23.07863609976079 18-19 22.175079796498917 27.12401450194037 28.279752896832612 22.421152804728102 20-21 22.964098736316117 26.336986216634696 27.851331192598806 22.84758385445038 22-23 22.771366674218395 26.83031046321146 27.6790467829633 22.719276079606846 24-25 22.61768572359752 26.96341245986753 28.030390393799465 22.38851142273548 26-27 22.418903619950882 26.95282062494489 28.093053434557053 22.535222320547177 28-29 21.97712592556388 26.93729570144076 28.36654487009089 22.719033502904466 30-31 22.50348380849157 26.68787022299436 27.695435532922097 23.11321043559197 32-33 22.651196526859348 26.82378362735974 28.160699282873214 22.364320562907693 34-35 22.704885934100727 27.404304641955502 28.00246494752689 21.888344476416883 36-37 22.521592942304068 26.98814691622427 27.743728267322066 22.7465318741496 38-39 22.394416044661213 26.81806503442965 28.054796796066878 22.73272212484226 40-41 22.458038056326284 26.671789627102978 28.28913428965341 22.58103802691733 42-43 22.77135413454821 26.616494363475468 27.97420285914645 22.637948642829873 44-45 22.285716287927233 27.321785737019173 27.678444934597294 22.714053040456296 46-47 22.99473651162109 26.712592263575385 26.98032474024709 23.312346484556436 48-49 22.797482858219627 26.82807078204422 27.126660981071403 23.247785378664744 50-51 22.644477850262202 26.944860249518943 27.23853108168767 23.17213081853119 52-53 22.634078300147817 27.11904731033813 27.47071202892974 22.77616236058432 54-55 22.653083397182105 27.241180014661886 26.929949879945013 23.175786708210993 56-57 23.056248685993495 27.58121391437614 26.388243075473465 22.9742943241569 58-59 22.491767430823547 27.834844879729438 27.165737781407273 22.507649908039742 60-61 23.05718113925526 28.283226147173057 26.231131334478793 22.428461379092894 62-63 22.718116584035602 28.26884007150381 26.283096292049112 22.72994705241147 64-65 22.741959923753512 27.889945941975164 26.40220675431954 22.96588737995178 66-67 22.816266450181555 27.717557114219034 26.412042127006924 23.054134308592488 68-69 22.93046348733074 27.32813669730448 26.619161787592244 23.12223802777254 70-71 23.017341579907082 26.893662191704376 26.68779630983223 23.401199918556312 72-73 23.035396246016376 27.096719056494738 26.720499366986044 23.147385330502836 74-75 22.98297500616717 27.182738060609175 26.703555431084723 23.13073150213893 76-77 23.028051432271628 27.08163395757335 26.65111737050766 23.23919723964736 78-79 22.89346790796496 27.152340653310887 26.565876188575565 23.388315250148587 80-81 22.958114951665628 27.048796277193514 26.722507289569275 23.270581481571583 82-83 23.230304551987484 26.86619925811817 26.85820785667317 23.04528833322118 84-85 23.250166504012654 27.001615364896253 26.580999040429916 23.167219090661177 86-87 23.04009056352133 27.072298580103343 26.717611420400782 23.169999435974542 88-89 23.202700593868357 26.865744475468812 26.542606483804214 23.388948446858617 90-91 23.1849203797989 26.838808410326603 26.714582231577783 23.261688978296714 92-93 23.28047228649118 26.80753135267606 26.748364864659642 23.163631496173117 94-95 22.934510412018184 26.867303272524047 26.884174420575864 23.314011894881908 96-97 23.046106193738506 26.89360154781344 26.843322458537134 23.21696979991092 98-99 23.2164396675769 27.479447686979224 26.860992673649285 22.44311997179459 100-101 27.758776910818888 34.402846325141184 27.388372862402466 10.450003901637462 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1392.0 1 1547.5 2 3153.0 3 4798.0 4 6934.0 5 12164.0 6 16116.5 7 18001.5 8 18451.5 9 16834.0 10 14354.5 11 12153.5 12 13319.5 13 18888.0 14 30757.0 15 46086.0 16 57793.5 17 63559.0 18 63705.5 19 59425.0 20 52853.5 21 46206.0 22 42186.5 23 43224.0 24 48842.5 25 58495.0 26 72254.0 27 87161.5 28 102403.5 29 121395.5 30 140155.5 31 157669.0 32 177946.5 33 196629.5 34 214220.5 35 234597.0 36 257172.0 37 280323.5 38 295354.5 39 305233.0 40 317386.5 41 326603.0 42 335817.0 43 351564.5 44 368585.0 45 388379.0 46 410881.0 47 433900.5 48 471433.5 49 490117.5 50 473364.5 51 462142.0 52 450589.5 53 425768.5 54 397587.0 55 368123.0 56 339087.0 57 305618.0 58 271359.5 59 232820.0 60 188861.5 61 152216.0 62 122422.0 63 95292.0 64 71696.0 65 54100.0 66 40784.5 67 32176.5 68 25684.5 69 19631.0 70 14547.0 71 9991.5 72 6958.0 73 4807.0 74 3224.0 75 2232.5 76 1543.5 77 1020.0 78 693.5 79 491.0 80 349.5 81 250.5 82 195.0 83 135.5 84 84.0 85 55.0 86 37.0 87 27.0 88 22.0 89 18.5 90 11.5 91 5.5 92 4.0 93 3.5 94 3.0 95 2.5 96 2.0 97 2.0 98 2.5 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 7.73163852912873E-4 3 1.742341076986756E-4 4 0.0 5 0.0 6 5.227023230960268E-4 7 0.0 8 0.0 9 2.177926346233445E-5 10-11 3.811371105908529E-4 12-13 2.3412708222009536E-4 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 3.26982747082333E-5 28-29 1.0909923038675404E-5 30-31 1.6402108851939313E-5 32-33 9.331433014445333E-5 34-35 2.207151668013489E-5 36-37 5.614408640452603E-4 38-39 7.867315697733685E-5 40-41 2.2753538843675396E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 5.032803498654008E-4 56-57 6.394188143359232E-5 58-59 0.0 60-61 8.414308352466498E-4 62-63 1.3497395070238418E-5 64-65 1.3756445840631988E-5 66-67 7.018406754290072E-6 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 1.8301677531762562E-4 88-89 5.083181176776775E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 299.0 20-21 1182.0 22-23 2100.0 24-25 3355.0 26-27 6981.0 28-29 15858.0 30-31 34101.0 32-33 44344.0 34-35 59435.0 36-37 90302.0 38-39 109496.0 40-41 104557.0 42-43 116397.0 44-45 135533.0 46-47 132513.0 48-49 125571.0 50-51 114677.0 52-53 108370.0 54-55 124494.0 56-57 134158.0 58-59 137608.0 60-61 139776.0 62-63 138441.0 64-65 141633.0 66-67 141493.0 68-69 122592.0 70-71 114091.0 72-73 105532.0 74-75 105426.0 76-77 103836.0 78-79 110789.0 80-81 112277.0 82-83 105351.0 84-85 103257.0 86-87 107556.0 88-89 113372.0 90-91 122756.0 92-93 124835.0 94-95 135472.0 96-97 195077.0 98-99 690335.0 100-101 4547819.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.15022778699297 #Duplication Level Percentage of deduplicated Percentage of total 1 88.61804784970117 71.91374769041892 2 7.01820763643459 11.39058296706161 3 2.1323840166623707 5.191303460444831 4 0.8873050110649893 2.8802001505785673 5 0.5018691491395039 2.0363397885967545 6 0.2670569263387433 1.3003038242689933 7 0.16245616532643975 0.9228348375149381 8 0.11139745298225444 0.7231942947520629 9 0.0677233991599703 0.4946192341506934 >10 0.22899713049189552 2.7666858567031176 >50 0.003318154854242627 0.1864909839944373 >100 0.0011861054825802512 0.1687396290652999 >500 5.1002361280970225E-5 0.02495728244979025 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0889631731167225E-5 0.0 0.0 0.0 0.0 2 6.533779038700335E-5 0.0 0.0 0.0 0.0 3 6.533779038700335E-5 0.0 0.0 0.0 0.0 4 6.533779038700335E-5 0.0 0.0 2.177926346233445E-5 0.0 5 1.9601337116101006E-4 0.0 0.0 2.177926346233445E-5 0.0 6 2.8313042501034786E-4 0.0 0.0 3.2668895193501676E-5 0.0 7 5.33591954827194E-4 0.0 0.0 3.2668895193501676E-5 0.0 8 5.553712182895285E-4 0.0 0.0 3.2668895193501676E-5 0.0 9 5.553712182895285E-4 0.0 0.0 5.444815865583613E-5 0.0 10-11 6.04374561079781E-4 0.0 0.0 7.622742211817058E-5 0.0 12-13 7.296053259882041E-4 0.0 0.0 9.256186971492142E-5 0.0 14-15 9.637324082082995E-4 0.0 0.0 1.0889631731167225E-4 0.0 16-17 0.0010399598303264701 0.0 0.0 1.1978594904283948E-4 0.0 18-19 0.0013612039663959033 0.0 0.0 1.6334447596750838E-4 0.0 20-21 0.0015681069692880805 0.0 0.0 2.940200567415151E-4 0.0 22-23 0.0017205618135244217 0.0 0.0 3.756922947252693E-4 0.0 24-25 0.0022432641366204485 0.0 0.0 4.682541644401907E-4 0.0 26-27 0.0022650434000827833 0.0 0.0 6.914916149291189E-4 0.0 28-29 0.002744187196254141 0.0 0.0 0.0017804547880458414 0.0 30-31 0.003027317621264489 0.0 0.0 0.003996494845338372 0.0 32-33 0.003054541700592407 0.0 0.0 0.0074321736565216324 0.0 34-35 0.0033376721256027546 0.0 0.0 0.012261725329294296 0.0 36-37 0.0037787022107150276 0.0 0.0 0.01935087558628416 0.0 38-39 0.004187063400633798 0.0 0.0 0.030158835079467632 0.0 40-41 0.0042197322958273005 0.0 0.0 0.04257846006886386 0.0 42-43 0.004432080114585062 0.0 0.0 0.05243902160143578 0.0 44-45 0.004764213882385661 0.0 0.0 0.06436316834706389 0.0 46-47 0.005325029916540773 0.0 0.0 0.0766902314667452 0.0 48-49 0.005575491446357619 0.0 0.0 0.08832580297149736 0.0 50-51 0.005575491446357619 0.0 0.0 0.0999123711334593 0.0 52-53 0.005613605157416705 0.0 0.0 0.1108128924963577 0.0 54-55 0.005755170369921879 0.0 0.0 0.12168074496406259 0.0 56-57 0.006217979718496486 0.0 0.0 0.13251592853657396 0.0 58-59 0.006228869350227653 0.0 0.0 0.14288830276051076 0.0 60-61 0.006261538245421154 0.0 0.0 0.15291765358491577 0.0 62-63 0.006354100115136077 0.0 0.0 0.16297422848864868 0.0 64-65 0.006424882721388663 0.0 0.0 0.17196906429859282 0.0 66-67 0.006838688727173018 0.0 0.0 0.1812470305335473 0.0 68-69 0.006969364307947024 0.0 0.0 0.19030720413387842 0.0 70-71 0.007132708783914533 0.0 0.0 0.19866499648754926 0.0 72-73 0.0072960532598820415 0.0 0.0 0.20501909660268536 0.0 74-75 0.007415839208924881 0.0 0.0 0.20990309643411387 0.0 76-77 0.00745939773584955 0.0 0.0 0.21416638725686582 0.0 78-79 0.007481176999311884 0.0 0.0 0.2179287550199841 0.0 80-81 0.007992989690676744 0.0 0.0 0.21979632686187928 0.0 82-83 0.008058327481063747 0.0 0.0 0.22049870810853958 0.0 84-85 0.008265230483955924 0.0 0.0 0.22111397230135055 0.0 86-87 0.008510247197907186 0.0 0.0 0.22132087530424271 0.0 88-89 0.008570140172428607 0.0 0.0 0.22139710272636087 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 12255 0.0 44.214577 1 TATACAC 14540 0.0 38.932304 3 TTATACA 15385 0.0 36.123066 2 GGTATCA 16340 0.0 35.66502 1 GTATCAA 25215 0.0 29.996622 1 TACACAT 21745 0.0 26.160477 5 ACACATC 21725 0.0 24.92301 6 ATACACA 24155 0.0 24.602917 4 ATCAACG 30140 0.0 24.475317 3 CAACGCA 30185 0.0 24.412642 5 TCAACGC 30840 0.0 23.984318 4 AACGCAG 31135 0.0 23.820992 6 ACATCTC 23115 0.0 23.664886 8 TATCAAC 31755 0.0 23.518528 2 CACATCT 24115 0.0 22.568241 7 TACATGG 34305 0.0 21.469242 2 ACATGGG 33995 0.0 21.127254 3 GTACATG 35825 0.0 20.93535 1 ACGCAGA 35415 0.0 20.82999 7 CGCAGAG 35380 0.0 20.82814 8 >>END_MODULE