##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139861_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15553370 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.720802501322865 31.0 31.0 34.0 30.0 34.0 2 31.91216784529655 31.0 31.0 34.0 30.0 34.0 3 31.934663805979024 31.0 31.0 34.0 30.0 34.0 4 35.666897784853056 37.0 35.0 37.0 33.0 37.0 5 35.48041254081913 37.0 35.0 37.0 33.0 37.0 6 35.47940227744855 37.0 35.0 37.0 33.0 37.0 7 35.35657108395158 37.0 35.0 37.0 32.0 37.0 8 35.32680525185217 37.0 35.0 37.0 32.0 37.0 9 36.88025636887697 39.0 37.0 39.0 33.0 39.0 10-11 36.71637837973378 39.0 35.0 39.0 32.0 39.0 12-13 36.66612428689088 39.0 35.0 39.0 32.0 39.0 14-15 37.7542259330293 40.0 37.0 41.0 32.0 41.0 16-17 37.7664309728374 40.0 37.0 41.0 32.0 41.0 18-19 37.76729988420516 40.0 37.0 41.0 32.0 41.0 20-21 37.75036431973608 40.0 37.0 41.0 32.0 41.0 22-23 37.66449902245106 39.0 37.0 41.0 32.0 41.0 24-25 37.54812661184937 39.0 36.0 41.0 32.0 41.0 26-27 37.37308290691595 39.0 36.0 41.0 32.0 41.0 28-29 37.22709818228458 39.0 36.0 40.0 31.0 41.0 30-31 37.06871261022975 39.0 36.0 40.0 31.0 41.0 32-33 37.22842489860753 39.0 36.0 40.0 31.0 41.0 34-35 37.1918537383319 39.0 36.0 40.0 31.0 41.0 36-37 37.085899045782355 39.0 36.0 40.0 31.0 41.0 38-39 36.877620622270825 39.0 35.0 40.0 30.0 41.0 40-41 36.89020813285222 39.0 35.0 40.0 30.0 41.0 42-43 36.78176098375338 39.0 35.0 40.0 30.0 41.0 44-45 36.840775161844164 38.5 35.0 40.0 30.5 41.0 46-47 36.982901712598746 39.0 35.0 40.0 31.0 41.0 48-49 36.92533402674093 39.0 35.0 40.0 30.5 41.0 50-51 36.781798236191385 39.0 35.0 40.0 30.0 41.0 52-53 36.65447874428051 39.0 35.0 40.0 30.0 41.0 54-55 36.53628919936344 38.0 35.0 40.0 30.0 41.0 56-57 36.348165679377246 38.0 35.0 40.0 30.0 41.0 58-59 36.19943866899789 38.0 34.0 40.0 29.0 41.0 60-61 36.00474920775274 38.0 34.0 40.0 29.0 41.0 62-63 35.76381023227651 37.5 34.0 40.0 29.0 41.0 64-65 35.55357769432288 37.0 34.0 40.0 29.0 41.0 66-67 35.28815656983461 36.5 34.0 39.0 28.0 41.0 68-69 34.97278136879878 36.0 33.0 39.0 28.0 40.5 70-71 34.63096963712707 36.0 33.0 39.0 28.0 40.0 72-73 34.346844278370895 35.0 33.0 38.0 28.0 40.0 74-75 33.988223644779424 35.0 32.0 37.5 27.5 39.5 76-77 32.92135042985562 34.0 31.0 36.0 26.0 39.0 78-79 33.27605347299007 35.0 32.0 36.0 26.5 39.0 80-81 33.15694256530339 35.0 32.0 36.0 27.0 38.5 82-83 32.73554490885445 34.0 31.5 35.5 26.0 37.0 84-85 32.495637011303806 34.0 31.0 35.0 26.0 37.0 86-87 32.4006163004107 34.0 31.0 35.0 26.0 36.0 88-89 32.236120903034774 34.0 31.0 35.0 26.0 36.0 90-91 32.10300214224124 34.0 31.0 35.0 26.0 36.0 92-93 32.01529173420646 34.0 31.0 35.0 26.0 35.0 94-95 31.97486264314712 34.0 31.0 35.0 26.0 35.0 96-97 31.89378015823185 34.0 31.0 35.0 26.0 35.0 98-99 32.108607390630844 34.0 31.0 35.0 26.5 35.0 100-101 31.21608150395047 33.0 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 2.0 18 6.0 19 47.0 20 210.0 21 1090.0 22 4475.0 23 14561.0 24 36572.0 25 75252.0 26 132543.0 27 206397.0 28 293054.0 29 386834.0 30 491471.0 31 604883.0 32 742280.0 33 920072.0 34 1173039.0 35 1518474.0 36 2087305.0 37 2814299.0 38 2654817.0 39 1356483.0 40 39202.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.898043960890796 22.422999002788462 14.470786716962305 25.20817031935844 2 14.174113751807749 22.71485112012806 40.447343973517434 22.663691154546754 3 16.772353308148222 27.935606748608617 31.95688985453891 23.335150088704253 4 11.717364146805483 19.80308447622605 38.48101729721598 29.998534079752492 5 11.986013320585828 38.99001952631488 36.53122763748306 12.49273951561623 6 28.665491787310405 39.23073263222054 18.796428040996904 13.307347539472152 7 25.093635655809642 33.133700284890026 23.637481780475873 18.13518227882446 8 24.382985809506234 36.70174373785231 21.747550530849587 17.167719921791868 9 25.405818803256143 15.629770268437001 20.93352115972294 38.03088976858391 10-11 23.7378844584807 26.88919186002776 29.48851277890258 19.884410902588957 12-13 24.692793266025305 24.35689821562787 29.21114202259703 21.739166495749796 14-15 21.88523130356958 25.660728189453476 26.582875608308683 25.871164898668265 16-17 21.545411265649868 28.737668437575113 27.375283371445175 22.341636925329848 18-19 21.410381048968286 28.003903515803557 28.965473476014537 21.620241959213622 20-21 22.324764068628873 27.1720597021528 28.52914893414549 21.97402729507284 22-23 21.959729567664805 27.81665299404656 28.212953180472667 22.010664257815968 24-25 21.946685583962413 27.9650167265927 28.577894651012404 21.510403038432486 26-27 22.057882565361847 28.10750731881857 28.29254471409862 21.54206540172096 28-29 21.479114117741805 28.302292019006202 28.366197954417334 21.852395908834662 30-31 22.525899076497176 27.77709653325316 28.327519508615417 21.36948488163425 32-33 21.2617679747947 28.463308506140162 28.40893006055904 21.865993458506097 34-35 21.82463770115001 28.370608899851085 28.6999215400545 21.104831858944404 36-37 21.572821718360984 28.381002010934992 28.494737753111266 21.551438517592754 38-39 21.477081971024553 27.623240271909232 28.89399613510767 22.00568162195854 40-41 21.631113822622343 27.445183441400033 29.05120312221512 21.872499613762503 42-43 22.09990891530737 27.454778268521284 28.61179449696421 21.83351831920714 44-45 21.589946757512372 28.26557858248212 28.290651635562842 21.85382302444267 46-47 22.21222931669053 27.586529009054207 27.692557992052507 22.508683682202758 48-49 22.141186377043702 27.544752890480318 27.756519658515888 22.55754107396009 50-51 21.808247676642598 27.59431860670558 28.0132996152439 22.584134101407923 52-53 21.77999124227059 27.761790650921558 28.31478146525343 22.14343664155442 54-55 21.857258565662537 27.877600317347312 27.744541445197257 22.520599671792894 56-57 22.426295960063182 28.115591826080617 27.142878529354753 22.31523368450145 58-59 21.814933075684 28.383433800870566 28.01146900581628 21.790164117629153 60-61 22.273748346541957 28.92353540902512 27.04839276968631 21.754323474746617 62-63 21.90685351000163 29.014169872878607 27.01686672096799 22.06210989615177 64-65 21.957563084715545 28.64153969192832 27.17811174887743 22.2227854744787 66-67 22.1054168118388 28.35272619949475 27.195270105408287 22.346586883258162 68-69 22.16112462987995 28.079219743314876 27.34876613868087 22.410889488124305 70-71 22.20571035945673 27.727985766477854 27.4951729481261 22.571130925939315 72-73 22.25574065919969 27.820346036494854 27.537972244085086 22.385941060220375 74-75 22.207235603322815 27.861480600766047 27.44930824331303 22.481975552598108 76-77 22.16457485933293 27.85881069324438 27.421527273742658 22.555087173680036 78-79 22.09623700588363 27.866390516891 27.424936405636817 22.612436071588554 80-81 22.085710446681077 27.734608661383632 27.574176743841623 22.605504148093665 82-83 22.278379845242817 27.694810630244742 27.608721904346297 22.418087620166144 84-85 22.486416610184598 27.734928690906685 27.350696062588053 22.42795863632066 86-87 22.16034278986299 27.71764390759986 27.597130692985257 22.524882609551895 88-89 22.283290385372 27.560286075503242 27.500058685871352 22.65636485325341 90-91 22.285088779425287 27.53096791938589 27.65254475088696 22.53139855030186 92-93 22.286583260826653 27.553281308059656 27.58639993376275 22.57373549735094 94-95 21.90913923036437 27.585233411264774 27.825781605223217 22.67984575314764 96-97 21.83574441321489 27.657528280824938 27.89694775664292 22.60977954931725 98-99 21.927517182444635 28.291094426228465 27.974438381870133 21.80695000945677 100-101 24.707061233881554 36.07417529772061 29.201178415799404 10.017585052598434 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3087.0 1 3279.5 2 6268.5 3 9488.0 4 12902.5 5 20061.0 6 25250.5 7 28313.5 8 29335.0 9 27115.0 10 23955.5 11 21625.5 12 24884.0 13 36070.5 14 59825.0 15 90388.0 16 111828.0 17 118821.5 18 115661.5 19 108361.0 20 99319.0 21 91409.0 22 88398.5 23 93685.5 24 108565.5 25 132550.0 26 163527.5 27 195093.0 28 227751.5 29 266270.0 30 300976.0 31 333948.5 32 372205.5 33 408558.5 34 445525.5 35 485281.0 36 524264.5 37 563574.0 38 591912.5 39 607347.0 40 621358.5 41 630399.0 42 639086.0 43 655916.0 44 673971.0 45 701400.5 46 756713.0 47 813860.5 48 814345.5 49 787938.5 50 764980.0 51 732071.5 52 692038.0 53 638684.5 54 582682.0 55 530598.5 56 481409.5 57 421706.5 58 359888.0 59 303503.5 60 246779.5 61 196242.5 62 153607.5 63 117920.5 64 87751.0 65 64423.0 66 47088.0 67 35919.5 68 27839.0 69 20377.5 70 14629.0 71 9945.5 72 6846.5 73 4562.5 74 3007.5 75 2032.5 76 1393.0 77 942.5 78 632.0 79 463.0 80 337.5 81 232.5 82 169.5 83 113.0 84 75.0 85 53.0 86 35.0 87 27.5 88 21.0 89 12.0 90 5.5 91 3.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0012408886305668805 3 6.429474769776583E-6 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0015527181569010447 18-19 0.001359833913807747 20-21 2.8934425172795582E-5 22-23 0.002401975986992673 24-25 1.383092142434817E-4 26-27 0.0011585621702804474 28-29 4.832061695763732E-4 30-31 1.54974817560739E-4 32-33 8.947902394465165E-4 34-35 0.016060497016630634 36-37 0.03217131456751113 38-39 0.0069830950214923955 40-41 0.004275235335184182 42-43 0.007085154223095408 44-45 0.005168468289190831 46-47 0.0029923648415572848 48-49 0.0013156838065277615 50-51 1.5350747025829313E-4 52-53 1.039315794656588E-4 54-55 0.0045020869095827865 56-57 0.012082459485187436 58-59 0.00983227038782692 60-61 0.00818324363249592 62-63 0.0018965677222527553 64-65 0.0012954171266056976 66-67 0.0015087019499205566 68-69 0.0 70-71 8.893282565733364E-6 72-73 6.441256264518626E-4 74-75 7.353229538413272E-4 76-77 7.54676399476632E-5 78-79 7.70411684410291E-4 80-81 0.002717775953344846 82-83 0.004881548642843836 84-85 0.012606084035133832 86-87 0.008092965236101058 88-89 0.07041669625919138 90-91 0.0 92-93 0.0 94-95 1.1859289998538935E-4 96-97 0.008741472259836729 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 559.0 20-21 2226.0 22-23 4277.0 24-25 7254.0 26-27 12402.0 28-29 26416.0 30-31 59399.0 32-33 79852.0 34-35 111847.0 36-37 169045.0 38-39 202274.0 40-41 197683.0 42-43 215528.0 44-45 247789.0 46-47 248155.0 48-49 233652.0 50-51 213701.0 52-53 205467.0 54-55 227118.0 56-57 246462.0 58-59 255691.0 60-61 266036.0 62-63 254185.0 64-65 258175.0 66-67 275308.0 68-69 231304.0 70-71 225621.0 72-73 212215.0 74-75 210856.0 76-77 212389.0 78-79 227352.0 80-81 232448.0 82-83 220766.0 84-85 219401.0 86-87 229349.0 88-89 247417.0 90-91 269290.0 92-93 282559.0 94-95 351105.0 96-97 424761.0 98-99 1149750.0 100-101 6586286.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.68696441670656 #Duplication Level Percentage of deduplicated Percentage of total 1 89.38086730102862 73.01251726753493 2 6.54625466906794 10.694873444297038 3 1.9147307639270366 4.692256313414435 4 0.8234216977679124 2.6905127570204623 5 0.4402925317692841 1.7983080187789577 6 0.2656607649432191 1.302061287169907 7 0.17187661383419053 0.9828055186836276 8 0.11566446137995053 0.7558622992817238 9 0.07623543102883154 0.5604696847570004 >10 0.26070756378206267 3.150820948660059 >50 0.003136116897809239 0.17846711042367572 >100 0.001107114899390284 0.14925812087633447 >500 2.9980623604004384E-5 0.018563601062078047 >1k 1.4989050118605575E-5 0.01322362803973066 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 6.429474769776582E-5 0.0 0.0 0.0 1.2858949539553164E-5 3 6.429474769776582E-5 0.0 0.0 0.0 1.2858949539553164E-5 4 6.429474769776582E-5 0.0 0.0 0.0 3.214737384888291E-5 5 1.1573054585597848E-4 0.0 0.0 0.0 3.214737384888291E-5 6 2.250316169421804E-4 0.0 0.0 0.0 4.5006323388436075E-5 7 3.986274357261481E-4 0.0 0.0 0.0 4.5006323388436075E-5 8 4.2434533480525445E-4 0.0 0.0 6.429474769776582E-6 6.429474769776582E-5 9 4.2434533480525445E-4 0.0 0.0 6.429474769776582E-6 8.358317200709557E-5 10-11 4.5327797126924903E-4 0.0 0.0 2.6682320294572816E-4 8.358317200709557E-5 12-13 5.079285068123501E-4 0.0 0.0 2.7646741510039304E-4 8.358317200709557E-5 14-15 6.429474769776582E-4 0.0 0.0 2.957558394097228E-4 1.0287159631642531E-4 16-17 6.815243255963177E-4 0.0 0.0 3.150442637190525E-4 1.2216002062575507E-4 18-19 8.969117303838332E-4 0.0 0.0 3.3433268802838227E-4 1.510926570897497E-4 20-21 0.001080151761322466 0.0 0.0 4.30774809575031E-4 1.6073686924441454E-4 22-23 0.0011315875594806785 0.0 0.0 4.918548198879086E-4 2.2181687955729208E-4 24-25 0.0015623623690557095 0.0 0.0 5.690085171252276E-4 3.054000515643877E-4 26-27 0.0015848655307499275 0.0 0.0 6.750948508265412E-4 3.0861478894927594E-4 28-29 0.0018774066327747621 0.0 0.0 0.0015880802681348157 3.1504426371905256E-4 30-31 0.0020188550777098468 0.0 0.0 0.003494419537373572 3.2468847587371744E-4 32-33 0.0020252845524796233 0.0 0.0 0.007229944378613767 4.1148638526570126E-4 34-35 0.0021892361591089263 0.0 0.0 0.012534261063679447 4.4363375911458415E-4 36-37 0.0024142677760511065 0.0 0.0 0.019947445473231847 4.4684849649947246E-4 38-39 0.0026618025546875047 0.0 0.0 0.03180661168608476 4.725663955785788E-4 40-41 0.0027035941406910527 0.0 0.0 0.044887378105195205 4.886400825030203E-4 42-43 0.003002564717485664 0.0 0.0 0.056142173689689115 4.950695572727968E-4 44-45 0.003381903728902482 0.0 0.0 0.06933545591727067 5.079285068123501E-4 46-47 0.0038062490637077364 0.0 0.0 0.08350280357247336 5.432906180461212E-4 48-49 0.0039798448824917045 0.0 0.0 0.09685682266929932 5.979411535892221E-4 50-51 0.0039798448824917045 0.0 0.0 0.11021727124089506 6.011558909741104E-4 52-53 0.0039927038320312575 0.0 0.0 0.12221145642391326 6.815243255963177E-4 54-55 0.004028065943265029 0.0 0.0 0.13480036802313583 7.779664471429665E-4 56-57 0.004320607045289863 0.0 0.0 0.14660166896306073 8.036843462220728E-4 58-59 0.004339895469599193 0.0 0.0 0.15791111508309774 8.101138209918494E-4 60-61 0.004400975479912071 0.0 0.0 0.16850688950368953 8.165432957616259E-4 62-63 0.004452411278070284 0.0 0.0 0.1784307838108397 8.808380434593918E-4 64-65 0.004500632338843608 0.0 0.0 0.1886440044826298 8.936969929989449E-4 66-67 0.004789958703483554 0.0 0.0 0.198825077780571 9.097706799233863E-4 68-69 0.004873541875490649 0.0 0.0 0.20950765011055483 9.129854173082747E-4 70-71 0.004976413471807075 0.0 0.0 0.21990089607589866 9.354885790024927E-4 72-73 0.005031064007350176 0.0 0.0 0.22843923857016196 0.0010351454379340297 74-75 0.005072855593353723 0.0 0.0 0.23655966520438979 0.0010351454379340297 76-77 0.005088929280278164 0.0 0.0 0.24366423482499291 0.0010351454379340297 78-79 0.005095358755047942 0.0 0.0 0.2504151833332583 0.0010351454379340297 80-81 0.005535777776777637 0.0 0.0 0.25430501556897317 0.0010640780743980242 82-83 0.005622575686169621 0.0 0.0 0.25718220552844817 0.0011315875594806785 84-85 0.005773668343259371 3.214737384888291E-6 0.0 0.26014619339731515 0.0011315875594806785 86-87 0.005892613626500238 6.429474769776582E-6 0.0 0.26054160609565646 0.0011380170342504552 88-89 0.005905472576039791 6.429474769776582E-6 0.0 0.26064447769197285 0.0011508759837900082 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 24680 0.0 43.94523 1 TATACAC 31105 0.0 37.087627 3 GGTATCA 25845 0.0 35.540607 1 TTATACA 31710 0.0 35.19357 2 GTATCAA 41525 0.0 28.210905 1 TACACAT 41645 0.0 27.524088 5 ACACATC 41365 0.0 26.40693 6 ACATCTC 44340 0.0 24.766378 8 ATACACA 51425 0.0 24.039536 4 CACATCT 45525 0.0 24.01095 7 CATCTCC 48650 0.0 22.492542 9 ATCAACG 50890 0.0 22.478155 3 TATCAAC 53110 0.0 21.859999 2 CAACGCA 52180 0.0 21.83324 5 CGTACCG 125 3.549951E-5 21.722326 5 TCAACGC 52615 0.0 21.711708 4 AACGCAG 52615 0.0 21.630611 6 TACATGG 55060 0.0 19.930418 2 GTACATG 57950 0.0 19.257776 1 ACGCAGA 59375 0.0 19.096046 7 >>END_MODULE