##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139859_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12082845 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.489348741956054 31.0 31.0 34.0 30.0 34.0 2 31.704895246111327 31.0 31.0 34.0 30.0 34.0 3 31.715624010735883 31.0 31.0 34.0 30.0 34.0 4 35.49495520301717 37.0 35.0 37.0 33.0 37.0 5 35.2760532804981 37.0 35.0 37.0 33.0 37.0 6 35.27834371789094 37.0 35.0 37.0 32.0 37.0 7 35.15901900587155 37.0 35.0 37.0 32.0 37.0 8 35.12373964906444 37.0 35.0 37.0 32.0 37.0 9 36.65231872129453 39.0 35.0 39.0 32.0 39.0 10-11 36.457225098890206 38.0 35.0 39.0 32.0 39.0 12-13 36.40848223245436 38.0 35.0 39.0 32.0 39.0 14-15 37.44778055168298 39.0 36.0 41.0 32.0 41.0 16-17 37.437798093081554 39.0 36.0 40.5 32.0 41.0 18-19 37.412629600065216 39.0 36.0 40.0 32.0 41.0 20-21 37.379822918675345 39.0 36.0 40.0 32.0 41.0 22-23 37.284076297975744 39.0 36.0 40.0 31.5 41.0 24-25 37.16419014006084 39.0 36.0 40.0 31.0 41.0 26-27 36.963834894916744 39.0 36.0 40.0 31.0 41.0 28-29 36.79134308506735 39.0 36.0 40.0 30.0 41.0 30-31 36.63603695337739 38.0 35.0 40.0 30.0 41.0 32-33 36.81428951721569 39.0 35.5 40.0 30.0 41.0 34-35 36.757852228698425 38.0 35.0 40.0 30.0 41.0 36-37 36.633419945041425 38.0 35.0 40.0 30.0 41.0 38-39 36.41405984889911 38.0 35.0 40.0 30.0 41.0 40-41 36.388370948702516 38.0 35.0 40.0 30.0 41.0 42-43 36.2392747643612 38.0 35.0 40.0 30.0 41.0 44-45 36.30062760991055 38.0 35.0 40.0 30.0 41.0 46-47 36.475923718498805 38.0 35.0 40.0 30.0 41.0 48-49 36.40431199844099 38.0 35.0 40.0 30.0 41.0 50-51 36.248947468743765 38.0 35.0 40.0 29.5 41.0 52-53 36.096922109517195 38.0 34.0 40.0 29.0 41.0 54-55 35.93241165008205 38.0 34.0 40.0 28.5 41.0 56-57 35.72758533171874 38.0 34.0 40.0 28.0 41.0 58-59 35.55407882050721 37.5 34.0 40.0 28.0 41.0 60-61 35.32827757559476 37.0 33.5 40.0 28.0 41.0 62-63 35.055668261878594 37.0 33.0 39.5 28.0 41.0 64-65 34.80252327813899 36.0 33.0 39.0 28.0 40.0 66-67 34.511479201154955 36.0 32.5 39.0 27.0 40.0 68-69 34.16309752377789 35.5 32.0 38.5 26.0 40.0 70-71 33.796273480605905 35.0 32.0 38.0 26.0 40.0 72-73 33.50131764055234 35.0 31.0 37.0 26.0 39.5 74-75 33.135457506492216 34.5 31.0 37.0 26.0 39.0 76-77 32.13435226362077 34.0 30.0 36.0 25.5 38.0 78-79 32.51156562446367 34.0 31.0 36.0 26.0 38.0 80-81 32.40071941711358 34.0 31.0 35.5 26.0 37.0 82-83 31.96923766990912 34.0 30.5 35.0 25.5 37.0 84-85 31.71637139955005 34.0 30.0 35.0 25.0 36.0 86-87 31.630926042008895 34.0 30.0 35.0 25.0 36.0 88-89 31.476687272419895 34.0 30.0 35.0 25.0 36.0 90-91 31.35782907881792 34.0 30.0 35.0 25.0 35.0 92-93 31.274855263000106 33.0 30.0 35.0 25.0 35.0 94-95 31.242426770668786 33.0 30.0 35.0 25.0 35.0 96-97 31.188056597490817 33.0 30.0 34.0 25.0 35.0 98-99 31.484333590568873 33.0 30.0 34.0 25.0 35.0 100-101 30.634723564438193 32.0 28.0 34.0 22.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 3.0 19 35.0 20 229.0 21 1157.0 22 5077.0 23 15792.0 24 39123.0 25 78271.0 26 134681.0 27 206476.0 28 286241.0 29 372075.0 30 463041.0 31 563738.0 32 682606.0 33 842095.0 34 1059340.0 35 1362317.0 36 1789247.0 37 2065331.0 38 1499793.0 39 608524.0 40 7651.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.754038059745035 23.506392741113537 15.701335240169017 25.038233958972413 2 14.628487398525817 23.28720946294276 39.184422622890665 22.899880515640763 3 17.15165592209451 27.96080724365826 31.72743670882147 23.16010012542576 4 12.645498638772573 19.910021191201245 37.70891706382065 29.735563106205532 5 12.469836367180081 38.68087358564974 36.24875598420736 12.60053406296282 6 29.652561131091225 39.22007606652242 17.99565416919608 13.131708633190279 7 25.501345088842903 32.73634644820818 23.713305930846584 18.04900253210233 8 24.463807985619283 36.92761100552064 21.290184555044775 17.318396453815303 9 25.349799653972223 15.832935041374776 20.716718620490457 38.100546684162545 10-11 24.07188042220189 26.820947384494296 29.26988221730892 19.837289975994892 12-13 24.806227341325656 24.081236662392012 28.974339238813375 22.138196757468958 14-15 22.039730709116935 25.450417513425027 26.077504925371464 26.432346852086575 16-17 21.979251330905804 28.582791968437064 26.810735174129164 22.627221526527965 18-19 22.103773641512436 27.660002106318604 28.336651785187776 21.89957246698118 20-21 22.78453751755241 27.024884018883743 27.931623088385425 22.25895537517842 22-23 22.45229727290409 27.37163227358271 27.755408948489247 22.420661505023954 24-25 22.366476936087842 27.598640537908835 27.920971639616184 22.113910886387135 26-27 22.471957774709914 27.660371155640345 27.965219827831543 21.902451241818195 28-29 22.217005977338456 27.366009074303616 28.151817961999903 22.26516698635803 30-31 22.50740797063039 27.7970294346191 27.616023937785883 22.079538656964633 32-33 22.811942160109027 27.491383524833484 27.731589040619696 21.965085274437794 34-35 22.37322967478304 27.44417672324584 27.98280303075681 22.19979057121431 36-37 22.218583123265 27.65079946879934 27.91125819350863 22.21935921442703 38-39 22.223449465040883 27.325034938808223 28.122753652426496 22.3287619437244 40-41 22.3455712362174 27.20418586166044 28.2933756524491 22.15686724967306 42-43 22.53523773506015 27.292257474855948 27.88948731497218 22.283017475111727 44-45 22.293896203803637 27.65368916977222 27.61271038177734 22.439704244646798 46-47 22.720902293845178 27.244356142442864 27.329543412219447 22.70519815149251 48-49 22.562752531122918 27.162747940625398 27.37249836559727 22.902001162654408 50-51 22.22508080124298 27.330624758348637 27.564041396220524 22.880253044187864 52-53 22.40782670222862 27.46865058679501 27.54128832382754 22.582234387148826 54-55 22.49357010678113 27.35122005588232 27.291976174800464 22.863233662536082 56-57 22.720523736127397 27.570020234990285 27.12980687282837 22.579649156053954 58-59 22.401940313281003 27.809000520520044 27.429558719952308 22.359500446246642 60-61 22.693349525748957 28.091467502385598 26.784845215710853 22.4303377561546 62-63 22.54204151242154 28.085694791046915 26.828709494093346 22.543554202438195 64-65 22.442835305283857 27.857832303854668 27.011426214763773 22.6879061760977 66-67 22.57369089124547 27.80918719668494 26.84209530008337 22.77502661198622 68-69 22.639886598214694 27.634355705374187 26.978569453629742 22.747188242781377 70-71 22.625189260544932 27.220065019535205 27.152631461849687 23.00211425807018 72-73 22.65766852390401 27.411471324968883 27.017069298390634 22.913790852736472 74-75 22.40661799078423 27.537853660708322 27.153857712085124 22.901670636422324 76-77 22.571295432044383 27.57032238143867 27.000389503517567 22.857992682999377 78-79 22.65183895263266 27.59776786554365 26.893221133215643 22.857172048608042 80-81 22.596438739900247 27.46688772646172 26.99384388380644 22.942829649831598 82-83 22.721151724102633 27.391028530257717 27.104530656350384 22.78328908928927 84-85 22.75818545588135 27.304788106910248 26.99639789006269 22.94062854714571 86-87 22.444412361496816 27.509793948841537 27.22458912595671 22.82120456370494 88-89 22.588628401783723 27.310420784513234 27.159278423608658 22.941672390094382 90-91 22.549688492382177 27.337109561048344 27.254267222644952 22.858934723924527 92-93 22.6630732453041 27.325907401121253 27.237567603580036 22.773451749994607 94-95 22.2365517339069 27.406337109884916 27.361849029949877 22.99526212625831 96-97 22.087400161003018 27.402568328663207 27.54216623482952 22.967865275504256 98-99 22.19187620896003 28.015521896863486 27.587339164715075 22.20526272946141 100-101 25.19071371262062 36.086200478572636 28.579988704661336 10.143097104145408 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1905.0 1 1987.5 2 3386.5 3 4895.5 4 6320.5 5 9262.0 6 11459.5 7 13207.5 8 14398.0 9 14114.0 10 13131.5 11 12427.5 12 14211.5 13 19792.0 14 32313.0 15 49097.0 16 61185.5 17 65156.0 18 64311.0 19 61627.5 20 57895.0 21 55083.0 22 55329.0 23 61133.5 24 73493.0 25 91906.5 26 116081.5 27 141951.5 28 166372.0 29 190604.0 30 210963.0 31 231430.0 32 261570.0 33 293834.0 34 323566.5 35 357806.5 36 396460.5 37 422234.5 38 430733.0 39 437289.5 40 451236.0 41 463955.0 42 470734.0 43 483440.0 44 496952.0 45 509954.0 46 530255.0 47 551534.5 48 557485.0 49 556298.5 50 560618.5 51 558881.0 52 538244.0 53 508116.5 54 474816.5 55 437680.5 56 405679.0 57 377254.0 58 342633.5 59 294570.0 60 241029.5 61 190523.0 62 147310.0 63 112865.0 64 84776.0 65 62274.0 66 45174.0 67 33409.0 68 25204.5 69 18837.0 70 14078.5 71 10351.0 72 7563.0 73 5438.5 74 3872.0 75 2672.5 76 1819.0 77 1219.5 78 856.0 79 632.0 80 457.0 81 308.5 82 219.5 83 164.0 84 128.0 85 97.5 86 73.5 87 56.5 88 33.0 89 15.0 90 10.5 91 8.5 92 8.5 93 5.5 94 2.5 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 7.614100818143409E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0015766154411481733 18-19 0.0012621199725726846 20-21 8.276753104247982E-6 22-23 0.0023178881820111762 24-25 1.490527079357732E-4 26-27 0.0011019004385729445 28-29 4.7265229665482413E-4 30-31 1.6199749726328075E-4 32-33 8.836370467499434E-4 34-35 0.015487573567544983 36-37 0.028041081660479007 38-39 0.005377532363228766 40-41 0.0032953170189615813 42-43 0.006955126515447688 44-45 0.004812772366919248 46-47 0.0026835189873033387 48-49 0.0011589287424061308 50-51 1.5597785591554736E-4 52-53 1.1149294865169022E-4 54-55 0.004292373111897084 56-57 0.011160021431825496 58-59 0.009475447655498327 60-61 0.007470135227186719 62-63 0.0016829645420408047 64-65 0.0010442745406936723 66-67 0.0013535950083150149 68-69 0.0 70-71 0.0 72-73 1.2031440341146022E-4 74-75 2.782531268695132E-4 76-77 5.665505389142036E-6 78-79 2.770707662980817E-4 80-81 0.0019384976560676212 82-83 0.003667047943309968 84-85 0.010315109051369797 86-87 0.006648906056807449 88-89 0.06435598880765411 90-91 0.0 92-93 0.0 94-95 4.270853849744101E-5 96-97 0.006115372344862334 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 480.0 20-21 1733.0 22-23 3311.0 24-25 5398.0 26-27 8841.0 28-29 16925.0 30-31 38386.0 32-33 52609.0 34-35 72146.0 36-37 108694.0 38-39 122075.0 40-41 124934.0 42-43 134627.0 44-45 154535.0 46-47 155610.0 48-49 148566.0 50-51 137018.0 52-53 136878.0 54-55 149699.0 56-57 159306.0 58-59 162044.0 60-61 166912.0 62-63 165457.0 64-65 168327.0 66-67 179149.0 68-69 163884.0 70-71 163291.0 72-73 157914.0 74-75 159535.0 76-77 159891.0 78-79 173524.0 80-81 183167.0 82-83 175304.0 84-85 177708.0 86-87 189440.0 88-89 209327.0 90-91 236008.0 92-93 260136.0 94-95 335177.0 96-97 408519.0 98-99 1019395.0 100-101 5336965.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.64560992929592 #Duplication Level Percentage of deduplicated Percentage of total 1 89.47471158141511 73.94692111893889 2 6.655259884885875 11.000560248487377 3 1.9295280388089926 4.784010649291421 4 0.8163674279165809 2.698767360263054 5 0.3914589887517497 1.6176183443846872 6 0.23367171646483764 1.1587164918277204 7 0.13622091145844983 0.7880642218825739 8 0.09181526807837559 0.6070503064927332 9 0.06355129966847624 0.4727012330610612 >10 0.2033903945455357 2.500883770586489 >50 0.003067697957999322 0.16587690761957347 >100 8.46214274491391E-4 0.12635020365068633 >500 3.685874219336503E-5 0.02360815218264455 >1k 7.371703130339455E-5 0.1088709913310743 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 4.138098270730114E-6 0.0 14-15 0.0 0.0 0.0 8.276196541460227E-6 0.0 16-17 8.276196541460227E-6 0.0 0.0 8.276196541460227E-6 0.0 18-19 8.276196541460227E-6 0.0 0.0 8.276196541460227E-6 0.0 20-21 8.276196541460227E-6 0.0 0.0 2.8966687895110794E-5 0.0 22-23 8.276196541460227E-6 0.0 0.0 8.276196541460228E-5 0.0 24-25 8.276196541460227E-6 0.0 0.0 2.8552878068037783E-4 0.0 26-27 8.276196541460227E-6 0.0 0.0 6.000242492558665E-4 0.0 28-29 8.276196541460227E-6 0.0 0.0 0.0032359928477109483 0.0 30-31 8.276196541460227E-6 0.0 0.0 0.008127225003713944 0.0 32-33 8.276196541460227E-6 0.0 0.0 0.017591055748873714 0.0 34-35 8.276196541460227E-6 0.0 0.0 0.032662009650872785 0.0 36-37 8.276196541460227E-6 0.0 0.0 0.049694422133197934 0.0 38-39 8.276196541460227E-6 0.0 0.0 0.07337262043831565 0.0 40-41 8.276196541460227E-6 0.0 0.0 0.09448519781558068 0.0 42-43 8.276196541460227E-6 0.0 0.0 0.11344596409206606 0.0 44-45 8.276196541460227E-6 0.0 0.0 0.13361505506360466 0.0 46-47 8.276196541460227E-6 0.0 0.0 0.15450831323252098 0.0 48-49 1.2414294812190341E-5 0.0 4.138098270730114E-6 0.17068000127453425 0.0 50-51 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.18528748817021157 0.0 52-53 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.19803696894233105 0.0 54-55 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.21163062176167946 4.138098270730114E-6 56-57 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.223382820850553 8.276196541460227E-6 58-59 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.2338563475737709 8.276196541460227E-6 60-61 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.24341121648088676 8.276196541460227E-6 62-63 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.25261848513326124 8.276196541460227E-6 64-65 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.2620740396818796 8.276196541460227E-6 66-67 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.271819261109449 8.276196541460227E-6 68-69 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.2820527781329646 8.276196541460227E-6 70-71 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.2921621522083582 8.276196541460227E-6 72-73 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.29989211977808206 8.276196541460227E-6 74-75 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.3073158680757719 8.276196541460227E-6 76-77 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.31427614936713993 8.276196541460227E-6 78-79 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.32069847788331307 8.276196541460227E-6 80-81 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.3250021000848724 8.276196541460227E-6 82-83 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.32803118801904685 8.276196541460227E-6 84-85 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.3309485472999115 8.276196541460227E-6 86-87 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.33145339528894063 8.276196541460227E-6 88-89 1.6552393082920455E-5 0.0 8.276196541460227E-6 0.33156098584397964 8.276196541460227E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14165 0.0 40.066452 1 CTTATAC 14980 0.0 34.74491 1 GTATCAA 22645 0.0 30.575243 1 TATACAC 18770 0.0 30.34248 3 TTATACA 20285 0.0 26.936308 2 TCAACGC 29990 0.0 22.528072 4 ATCAACG 30005 0.0 22.503521 3 CAACGCA 30450 0.0 22.187748 5 TATCAAC 31085 0.0 21.99138 2 TACACAT 25580 0.0 21.843624 5 AACGCAG 32370 0.0 20.908663 6 ATACACA 29935 0.0 20.024738 4 ACACATC 26435 0.0 19.990501 6 ACATCTC 27120 0.0 19.32381 8 ACGCAGA 35665 0.0 18.876322 7 TACATGG 34940 0.0 18.126757 2 CACATCT 28725 0.0 18.105255 7 GTACATG 35615 0.0 18.007177 1 CGCAGAG 37715 0.0 17.850298 8 ACATGGG 35055 0.0 17.441319 3 >>END_MODULE