##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139858_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32865586 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.892614420445753 31.0 30.0 33.0 28.0 34.0 2 31.320021830738085 31.0 31.0 34.0 28.0 34.0 3 31.471688227314736 31.0 31.0 34.0 28.0 34.0 4 35.15081407646284 37.0 35.0 37.0 32.0 37.0 5 35.199086241760604 37.0 35.0 37.0 33.0 37.0 6 35.069740092265505 37.0 35.0 37.0 32.0 37.0 7 35.087404222763595 37.0 35.0 37.0 32.0 37.0 8 35.18587175046871 37.0 35.0 37.0 32.0 37.0 9 36.90222696774675 39.0 37.0 39.0 33.0 39.0 10-11 36.879230922582664 39.0 37.0 39.0 32.5 39.0 12-13 36.79318972130909 39.0 37.0 39.0 32.0 39.0 14-15 37.96831920173278 40.0 37.0 41.0 33.0 41.0 16-17 38.00825255329389 40.0 37.0 41.0 33.0 41.0 18-19 38.061404062596054 40.0 37.5 41.0 33.0 41.0 20-21 38.07377788189445 40.0 37.5 41.0 33.0 41.0 22-23 38.021271459908235 40.0 37.0 41.0 33.0 41.0 24-25 38.046480420660934 40.0 37.0 41.0 33.0 41.0 26-27 37.932904396762254 40.0 37.0 41.0 32.5 41.0 28-29 37.88934599661639 40.0 37.0 41.0 32.5 41.0 30-31 37.81293991428347 40.0 37.0 41.0 32.0 41.0 32-33 37.7233921023563 40.0 37.0 41.0 32.0 41.0 34-35 37.6412934908301 40.0 37.0 41.0 32.0 41.0 36-37 37.54572460199814 40.0 37.0 41.0 32.0 41.0 38-39 37.519716975404165 40.0 37.0 41.0 31.0 41.0 40-41 37.44829646565272 40.0 36.0 41.0 31.0 41.0 42-43 37.39812081765085 40.0 36.0 41.0 31.0 41.0 44-45 37.33317810787189 39.0 36.0 41.0 31.0 41.0 46-47 37.205900688725535 39.0 36.0 41.0 31.0 41.0 48-49 37.13400252701027 39.0 36.0 41.0 31.0 41.0 50-51 37.0675290039243 39.0 36.0 41.0 31.0 41.0 52-53 36.986454316965606 39.0 35.5 41.0 30.5 41.0 54-55 36.83657402342577 39.0 35.0 40.5 30.0 41.0 56-57 36.68595517569385 39.0 35.0 40.0 30.0 41.0 58-59 36.50494878747231 38.0 35.0 40.0 30.0 41.0 60-61 36.330243346612804 38.0 35.0 40.0 30.0 41.0 62-63 36.14305556309492 38.0 34.0 40.0 29.0 41.0 64-65 35.955576506704546 37.5 34.0 40.0 29.0 41.0 66-67 35.697141725960634 37.0 34.0 40.0 29.0 41.0 68-69 35.39502734165925 36.5 34.0 39.0 29.0 41.0 70-71 35.10714291129766 36.0 34.0 39.0 29.0 40.5 72-73 34.83580428911765 36.0 33.5 39.0 29.0 40.0 74-75 34.53232422124823 35.0 33.0 38.0 28.5 40.0 76-77 34.23537250869349 35.0 33.0 37.0 28.0 39.0 78-79 34.196593416762525 35.0 33.0 37.0 29.0 39.0 80-81 33.955551350143274 35.0 33.0 36.5 29.0 39.0 82-83 33.75393967428425 35.0 33.0 36.0 29.0 38.5 84-85 33.53819647401333 35.0 33.0 36.0 29.0 37.0 86-87 33.33384243589387 35.0 33.0 35.5 29.0 37.0 88-89 33.18054698830892 35.0 33.0 35.0 29.0 36.5 90-91 33.06881268684471 35.0 32.5 35.0 29.0 36.0 92-93 33.00662064311973 35.0 32.0 35.0 29.0 36.0 94-95 32.967990695777914 34.5 32.0 35.0 29.0 36.0 96-97 33.01208411533013 34.0 32.0 35.0 29.0 35.0 98-99 33.12022566536295 34.0 33.0 35.0 29.0 35.0 100 32.6779901633125 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 3.0 16 25.0 17 344.0 18 3216.0 19 11714.0 20 24913.0 21 42635.0 22 67587.0 23 104714.0 24 158254.0 25 228994.0 26 319181.0 27 421698.0 28 537676.0 29 665321.0 30 818161.0 31 1003755.0 32 1243173.0 33 1579038.0 34 2080760.0 35 2818578.0 36 4100098.0 37 6153841.0 38 6941242.0 39 3417471.0 40 123193.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.91962680963607 19.212458283871765 9.62827499865665 29.239639907835507 2 14.277627668041578 23.111530705705356 36.91791468437532 25.69292694187774 3 17.489370188013687 27.577831717347134 29.230822173686484 25.701975920952698 4 12.052093031294193 19.449983335151853 38.26083307931889 30.237090554235056 5 12.998956385481689 39.04577573187471 34.63513698853664 13.320130894106965 6 28.297631059046395 40.188134293237866 18.357909399064848 13.15632524865089 7 25.313210602725906 34.63578285200818 22.836014547253168 17.214991998012756 8 24.82209810590324 36.895903818663086 20.68510203956199 17.596896035871687 9 25.944016333681073 16.977284384949044 21.039877396374433 36.03882188499545 10-11 23.549555757198426 27.62535711366899 28.809662788303854 20.015424340828734 12-13 24.689328527414663 25.402897121627465 29.045766900368065 20.862007450589807 14-15 22.078529194641472 26.319888225939437 26.983521608286555 24.61806097113254 16-17 21.16744396402973 29.304412828665217 27.652008091381663 21.876135115923386 18-19 21.13185658700867 28.402031231087737 29.588845608899227 20.87726657300436 20-21 22.165994782089903 27.468112099391096 29.45569168282433 20.910201435694674 22-23 21.802934550655497 27.34192556848732 29.39204871725743 21.463091163599753 24-25 21.43777550420132 27.513993534509535 29.522268197654398 21.525962763634745 26-27 21.446523546755053 27.688358308470708 29.350951810167086 21.514166334607157 28-29 21.49383369797433 27.594850535896526 29.449170495073762 21.462145271055377 30-31 21.72066548933748 27.52262395325452 29.346426749381223 21.410283808026772 32-33 21.49925256648317 27.724727200314746 29.313560945342545 21.462459287859538 34-35 21.66127439844176 27.682797800393917 29.31097529404575 21.344952507118574 36-37 21.63994399893121 27.55745032638731 29.29726528175981 21.50534039292167 38-39 21.46817156282484 27.781148391181056 29.329156816836647 21.421523229157458 40-41 21.755490210500945 27.645105574101013 29.111834524092945 21.4875696913051 42-43 21.601904452085567 27.741289335821083 28.93746156188668 21.719344650206672 44-45 21.66253146708868 27.977217726219884 28.73070826501431 21.629542541677132 46-47 21.827201653198593 27.916051889694494 28.394805530758866 21.86194092634805 48-49 21.754906037433845 28.04690513582949 28.340668731742564 21.8575200949941 50-51 21.763967711028872 28.234576805656058 28.09015812767685 21.91129735563822 52-53 21.958096040752977 28.190002479759634 27.847426544768723 22.004474934718665 54-55 21.899123846485715 28.087490285150608 27.989539684442168 22.02384618392151 56-57 21.885966562933664 28.249493511316633 27.92880581779556 21.935734107954143 58-59 21.891366910873998 28.277636811563873 27.891516072221023 21.939480205341102 60-61 21.979805569084398 28.231045455961613 27.88531173887252 21.90383723608147 62-63 21.946796041895915 28.33492596818225 27.882214717746507 21.836063272175327 64-65 21.905120970777283 28.186106179816917 27.90048104030819 22.00829180909761 66-67 21.942078853993177 28.34616713676113 27.73131694585784 21.98043706338785 68-69 21.879840982003394 28.25355591804819 27.853099294878536 22.013503805069885 70-71 21.915716278856006 27.980415530348267 27.90605969700258 22.197808493793147 72-73 21.936903846590226 28.084155930613026 27.860921187145205 22.118019035651546 74-75 21.762079229528013 28.263414766647983 27.903555559441866 22.070950444382138 76-77 21.94096428058075 28.193232754187825 27.801959585310243 22.063843379921178 78-79 21.850548476729642 28.243839985153645 27.795002961994538 22.110608576122175 80-81 21.885119281942217 28.299329838801963 27.721053438833742 22.094497440422078 82-83 21.938594311527222 28.207803398876912 27.851836796424323 22.00176549317154 84-85 21.994452083331243 28.22092475659428 27.792712669335085 21.9919104907394 86-87 21.799849177877583 28.340563381112265 27.88239117852355 21.977196262486594 88-89 21.868984957777386 28.239842372136266 27.81427983789939 22.076892832186957 90-91 21.875125430659352 28.282912846224217 27.867342055511184 21.974619667605243 92-93 21.92549908555893 28.296065645822654 27.81659012863488 21.961845139983545 94-95 21.74759705447426 28.326569593493982 27.89803138883713 22.02780196319463 96-97 21.797156283532573 28.471947200598613 27.958822928547512 21.7720735873213 98-99 22.710914472059727 30.454861964374007 28.1626175168327 18.671606046733572 100 21.953040285201325 31.268868576220797 21.99460776204849 24.78348337652939 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 27069.0 1 21412.0 2 11912.0 3 7736.5 4 7954.5 5 11685.0 6 16848.0 7 21885.5 8 28440.5 9 33858.0 10 35418.0 11 38673.5 12 47131.5 13 70471.5 14 115799.5 15 173538.0 16 221672.5 17 244089.5 18 249461.5 19 232022.5 20 206284.0 21 190297.0 22 183737.0 23 198297.0 24 232812.5 25 284482.5 26 353566.5 27 427676.5 28 492513.0 29 561373.5 30 632879.5 31 699664.0 32 773463.5 33 848469.5 34 921701.5 35 986621.0 36 1057111.0 37 1127300.0 38 1173813.0 39 1206895.5 40 1236796.0 41 1259698.5 42 1273938.0 43 1295270.5 44 1314695.5 45 1329952.5 46 1337304.0 47 1333120.0 48 1327788.0 49 1312471.0 50 1287736.5 51 1249563.5 52 1190704.0 53 1118865.0 54 1046584.0 55 976891.5 56 908239.0 57 829522.5 58 746284.0 59 664324.0 60 567809.5 61 460928.0 62 359767.5 63 277703.0 64 213785.5 65 164197.5 66 125912.0 67 96495.0 68 73778.0 69 55823.5 70 41439.0 71 29720.0 72 21502.0 73 15796.5 74 11562.5 75 8404.5 76 5949.5 77 4147.5 78 2935.5 79 2101.5 80 1474.5 81 1064.0 82 810.0 83 571.5 84 403.0 85 295.5 86 226.5 87 182.0 88 143.0 89 109.5 90 81.0 91 61.5 92 49.5 93 40.5 94 39.0 95 49.0 96 50.0 97 37.0 98 20.0 99 17.0 100 32.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.1457847123127517 6 0.0062071006432077615 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.5220464316093246E-6 22-23 4.615201624221967E-4 24-25 4.039676636842674E-4 26-27 0.003292766289885501 28-29 6.630996185252065E-4 30-31 3.0620805600324876E-6 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0025783653215622707 48-49 0.0 50-51 2.3155411014334358E-5 52-53 0.0 54-55 1.011590176427565E-5 56-57 1.3270874021464448E-4 58-59 1.150828967010938E-4 60-61 1.5091989579588344E-4 62-63 0.0 64-65 6.716346064538465E-4 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 2.3255798810177522E-4 76-77 5.2624049355945535E-5 78-79 3.21077238834539E-4 80-81 0.0 82-83 0.0 84-85 1.9687006520572803E-6 86-87 0.0 88-89 6.660629041916953E-4 90-91 0.0 92-93 1.4578387008108042E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 9279.0 20-21 23413.0 22-23 26598.0 24-25 29428.0 26-27 37925.0 28-29 60048.0 30-31 86679.0 32-33 103515.0 34-35 140975.0 36-37 200656.0 38-39 257411.0 40-41 257537.0 42-43 290708.0 44-45 344048.0 46-47 333693.0 48-49 309051.0 50-51 381762.0 52-53 252001.0 54-55 264175.0 56-57 277124.0 58-59 283433.0 60-61 283166.0 62-63 259275.0 64-65 263675.0 66-67 284163.0 68-69 292662.0 70-71 297737.0 72-73 274432.0 74-75 268115.0 76-77 280608.0 78-79 302457.0 80-81 316076.0 82-83 302363.0 84-85 297785.0 86-87 315115.0 88-89 355959.0 90-91 392964.0 92-93 420774.0 94-95 485747.0 96-97 1128001.0 98-99 2047376.0 100-101 2.0027677E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.24420712149856 #Duplication Level Percentage of deduplicated Percentage of total 1 87.82122449624364 70.47144528140198 2 7.9873623262511 12.818791137242957 3 2.1209409025002572 5.105796632180662 4 0.8198844135624725 2.631638987903817 5 0.4248339368351853 1.7045231209822127 6 0.23290351754729688 1.121349486083452 7 0.14869708077014537 0.8352455543377222 8 0.09869699531941142 0.633588970774434 9 0.06639490358840514 0.47950257558239207 >10 0.2698766145397937 3.410043234299788 >50 0.006806404618784901 0.3756793265277646 >100 0.0022769957402907453 0.3072701671269032 >500 4.631043246166683E-5 0.024635692774431426 >1k 5.5102050718387364E-5 0.08048983278152873 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.0426963937292948E-5 0.0 6.08539278745859E-6 0.0 3 0.0 3.6512356724751536E-5 0.0 1.5213481968646474E-5 0.0 4 0.0 9.736628459933744E-5 0.0 1.8256178362375768E-5 0.0 5 0.0 9.736628459933744E-5 0.0 3.3469660331022244E-5 0.0 6 0.0 9.736628459933744E-5 0.0 4.259774951221013E-5 6.08539278745859E-6 7 0.0 9.736628459933744E-5 0.0 6.0853927874585896E-5 6.08539278745859E-6 8 0.0 1.1257976656798392E-4 0.0 6.693932066204449E-5 6.08539278745859E-6 9 3.042696393729295E-6 2.1298874756105063E-4 0.0 7.911010623696167E-5 6.08539278745859E-6 10-11 1.5213481968646474E-5 2.1298874756105063E-4 0.0 7.911010623696167E-5 6.08539278745859E-6 12-13 1.6734830165511122E-5 2.1298874756105063E-4 0.0 7.911010623696167E-5 6.08539278745859E-6 14-15 2.434157114983436E-5 2.7079997904190723E-4 0.0 7.911010623696167E-5 1.217078557491718E-5 16-17 2.434157114983436E-5 2.738426754356365E-4 0.0 8.063145443382632E-5 1.217078557491718E-5 18-19 2.5862919346699006E-5 3.2100446953844063E-4 0.0 8.519549902442026E-5 1.5213481968646474E-5 20-21 3.3469660331022244E-5 3.6816626364124464E-4 0.0 1.1257976656798392E-4 1.8256178362375768E-5 22-23 3.9555053118480836E-5 4.5184041446880033E-4 0.0 1.4300673050527687E-4 2.1298874756105064E-5 24-25 3.9555053118480836E-5 5.020449049653337E-4 0.0 1.764763908362991E-4 2.434157114983436E-5 26-27 4.259774951221013E-5 5.142156905402508E-4 0.0 2.525438006795315E-4 2.434157114983436E-5 28-29 5.4768535087127305E-5 5.142156905402508E-4 0.0 6.891707331796853E-4 2.5862919346699006E-5 30-31 5.4768535087127305E-5 5.750696184148367E-4 0.0 0.0017678066047567202 2.7384267543563652E-5 32-33 5.4768535087127305E-5 5.796336630054307E-4 0.0 0.0035995098337817557 2.7384267543563652E-5 34-35 5.78112314808566E-5 6.709145548173096E-4 0.0 0.005921087182197207 2.7384267543563652E-5 36-37 6.0853927874585896E-5 7.606740984323237E-4 0.0 0.009085491431675674 2.7384267543563652E-5 38-39 6.0853927874585896E-5 7.880583659758873E-4 0.0 0.014420859558079993 2.7384267543563652E-5 40-41 6.0853927874585896E-5 9.006381325438713E-4 0.0 0.020045283841888594 2.7384267543563652E-5 42-43 6.0853927874585896E-5 9.371504892686229E-4 0.0 0.024979016044320644 3.0426963937292948E-5 44-45 6.0853927874585896E-5 0.001083199916167629 0.0 0.03043000663368668 3.0426963937292948E-5 46-47 7.758875804009702E-5 0.00120795046831053 0.0 0.03611528484536987 3.3469660331022244E-5 48-49 9.432358820560813E-5 0.0012140358610979885 0.0 0.04144000353439613 3.6512356724751536E-5 50-51 9.432358820560813E-5 0.0014741864027618434 0.0 0.046627800885704576 3.6512356724751536E-5 52-53 9.432358820560813E-5 0.0014878785365336252 0.0 0.05219897798262292 4.4119097709074774E-5 54-55 1.0193032918993137E-4 0.001501570670305407 0.0 0.0577595056421632 4.716179410280407E-5 56-57 1.1410111476484855E-4 0.001536561678833294 0.0 0.06293513220789673 4.868314229966872E-5 58-59 1.1562246296171321E-4 0.0015396043752270233 0.0 0.06779127565228868 4.868314229966872E-5 60-61 1.1562246296171321E-4 0.0015517751608019404 0.0 0.07217275845925888 4.868314229966872E-5 62-63 1.277932485366304E-4 0.0015837234729360978 0.0 0.07649034464196075 6.0853927874585896E-5 64-65 1.277932485366304E-4 0.0016187144814639848 0.0 0.07987534437998459 6.0853927874585896E-5 66-67 1.2931459673349503E-4 0.001623278526054579 0.0 0.08310060255733764 6.541797246517984E-5 68-69 1.3083594493035967E-4 0.0016628335791730596 0.0 0.08599268547957734 6.998201705577378E-5 70-71 1.3692133771781826E-4 0.0016826111057323002 0.0 0.08832034822078025 6.998201705577378E-5 72-73 1.3996403411154756E-4 0.0016932605431103525 0.0 0.09054760198099009 7.911010623696167E-5 74-75 1.3996403411154756E-4 0.001726730203441375 0.0 0.09237626251362138 7.911010623696167E-5 76-77 1.3996403411154756E-4 0.001811925702465795 0.0 0.0939812848613136 7.911010623696167E-5 78-79 1.3996403411154756E-4 0.0018666942375529223 0.0 0.0950523139919063 7.911010623696167E-5 80-81 1.4300673050527687E-4 0.0018712582821435162 0.0 0.09543721508571307 8.823819541814955E-5 82-83 1.4300673050527687E-4 0.0018773436749309749 0.0 0.09589970493755992 9.888763279620208E-5 84-85 1.506134714896001E-4 0.0018834290677184336 0.0 0.09612182177430215 1.0040898099306673E-4 86-87 1.5822021247392334E-4 0.0019077706388682678 0.0 0.09619028244316107 1.0040898099306673E-4 88 1.5822021247392334E-4 0.002075118940523379 0.0 0.09619788918414539 1.0345167738679602E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 48595 0.0 53.996586 1 GTATCAA 91230 0.0 37.185616 1 ATCAACG 113235 0.0 29.441824 3 TCAACGC 113210 0.0 29.437237 4 TATCAAC 115910 0.0 28.921247 2 CAACGCA 115175 0.0 28.884129 5 AACGCAG 118865 0.0 28.071188 6 ACGCAGA 138615 0.0 23.943695 7 CGCAGAG 140705 0.0 23.599922 8 GCAGAGT 160660 0.0 20.489159 9 GAGTACT 92300 0.0 19.672716 12-13 GTACATG 115540 0.0 18.82333 1 TACATGG 113440 0.0 18.729021 2 CAGAGTA 158165 0.0 18.3773 10-11 ACATGGG 114915 0.0 18.029684 3 GTACTTT 100200 0.0 18.015339 14-15 AGAGTAC 147515 0.0 17.756187 10-11 GTGGTAT 20180 0.0 17.173895 1 AGTACTT 101500 0.0 16.561598 12-13 TGGTATC 18810 0.0 16.533302 2 >>END_MODULE