##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139857_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10473107 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.82770585653331 31.0 31.0 34.0 30.0 34.0 2 31.995843162874205 31.0 31.0 34.0 30.0 34.0 3 32.01813740659768 31.0 31.0 34.0 30.0 34.0 4 35.73422901150537 37.0 35.0 37.0 35.0 37.0 5 35.54673345741622 37.0 35.0 37.0 33.0 37.0 6 35.55202243231163 37.0 35.0 37.0 33.0 37.0 7 35.44300616808364 37.0 35.0 37.0 33.0 37.0 8 35.42450478162784 37.0 35.0 37.0 33.0 37.0 9 36.9619652506176 39.0 37.0 39.0 33.0 39.0 10-11 36.85260171599508 39.0 37.0 39.0 33.0 39.0 12-13 36.78957901413592 39.0 37.0 39.0 32.0 39.0 14-15 37.90150635336772 40.0 37.0 41.0 33.0 41.0 16-17 37.88610137373752 40.0 37.0 41.0 33.0 41.0 18-19 37.92571483323907 40.0 37.0 41.0 33.0 41.0 20-21 37.90449081083814 40.0 37.0 41.0 32.5 41.0 22-23 37.83751510083742 40.0 37.0 41.0 32.0 41.0 24-25 37.7469158545696 39.5 37.0 41.0 32.0 41.0 26-27 37.55412317289476 39.0 36.5 41.0 32.0 41.0 28-29 37.44603461368035 39.0 36.0 41.0 32.0 41.0 30-31 37.29827864826535 39.0 36.0 40.5 31.0 41.0 32-33 37.46122580526114 39.0 36.0 41.0 32.0 41.0 34-35 37.41759251578397 39.0 36.0 41.0 31.5 41.0 36-37 37.32965627724093 39.0 36.0 41.0 31.0 41.0 38-39 37.22588483580928 39.0 36.0 41.0 31.0 41.0 40-41 37.13665777995282 39.0 36.0 41.0 31.0 41.0 42-43 37.095526831215395 39.0 36.0 40.0 31.0 41.0 44-45 37.12152165103132 39.0 35.5 40.5 31.0 41.0 46-47 37.22306850563348 39.0 36.0 41.0 31.0 41.0 48-49 37.16876830196773 39.0 36.0 41.0 31.0 41.0 50-51 37.06225066587248 39.0 35.5 41.0 31.0 41.0 52-53 36.96656025297533 39.0 35.0 40.5 31.0 41.0 54-55 36.84672341287312 39.0 35.0 40.0 31.0 41.0 56-57 36.724899810698815 39.0 35.0 40.0 30.0 41.0 58-59 36.58664593794083 38.0 35.0 40.0 30.0 41.0 60-61 36.373886776612224 38.0 35.0 40.0 30.0 41.0 62-63 36.16409231125209 38.0 34.0 40.0 29.0 41.0 64-65 35.96468899431326 37.5 34.0 40.0 29.0 41.0 66-67 35.71361749024912 37.0 34.0 40.0 29.0 41.0 68-69 35.44154743876065 37.0 34.0 39.0 29.0 41.0 70-71 35.151588290808604 36.0 34.0 39.0 29.0 40.5 72-73 34.853265171710206 36.0 33.0 39.0 28.5 40.0 74-75 34.506938959304904 35.0 33.0 38.0 28.0 40.0 76-77 33.45529426555261 34.5 31.5 37.0 26.5 39.0 78-79 33.86166278231043 35.0 32.5 37.0 28.0 39.0 80-81 33.75575519084758 35.0 33.0 36.5 28.0 39.0 82-83 33.521688079421565 35.0 32.5 36.0 28.0 38.5 84-85 33.292300468575945 35.0 32.0 36.0 28.0 37.0 86-87 33.07972599003848 35.0 32.0 35.0 28.0 37.0 88-89 32.8716936283366 34.0 32.0 35.0 27.0 36.5 90-91 32.74094759245992 34.0 32.0 35.0 27.0 36.0 92-93 32.662748128757016 34.0 32.0 35.0 27.0 36.0 94-95 32.62242386528334 34.0 32.0 35.0 27.0 35.5 96-97 32.630923429509636 34.0 32.0 35.0 28.0 35.0 98-99 32.74978752910691 34.0 32.0 35.0 29.0 35.0 100-101 32.121093199607536 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 2.0 19 25.0 20 114.0 21 661.0 22 2671.0 23 8881.0 24 22438.0 25 46939.0 26 82980.0 27 128337.0 28 182243.0 29 240954.0 30 305130.0 31 377059.0 32 463644.0 33 574566.0 34 736901.0 35 961325.0 36 1328657.0 37 1920403.0 38 2091059.0 39 965683.0 40 32434.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.7832480848329 22.523029698827674 15.687044923727028 24.0066772926124 2 13.678274701779872 22.890430439397914 41.543001687145754 21.888293171676462 3 16.593156166551147 28.4165529866161 31.8410668390956 23.14922400773715 4 11.916712012968071 19.689601185207025 39.838445267483664 28.555241534341242 5 12.192697390124515 38.892315125266094 36.42705768728567 12.487929797323716 6 28.006741456952554 39.93382288560596 19.363136459887215 12.69629919755427 7 24.498995379308163 33.614924396361076 24.95161178053466 16.934468443796096 8 23.461366335701523 37.80189584618967 21.97888363023504 16.75785418787376 9 25.310674282235446 16.66451035017593 22.05437221256309 35.970443155025535 10-11 23.50050467354148 27.474778974376946 29.862379903117574 19.162336448964 12-13 24.337801571205183 25.18038343349304 29.837912474302037 20.643902520999738 14-15 21.566947611630436 26.379903308540626 27.468281380110028 24.58486769971891 16-17 20.936986512216478 29.35411143990031 28.188048685075024 21.52085336280819 18-19 21.028586454862527 28.618059724978494 29.853361076864555 20.499992743294424 20-21 21.92796585387117 27.78085540924512 29.590739840589457 20.700438896294248 22-23 21.670533048865394 27.681986606272062 29.45845166732569 21.189028677536847 24-25 21.414859097956 27.886039942648942 29.46447890216417 21.234622057230883 26-27 21.295578440118447 28.036851421899232 29.404717762305644 21.262852375676676 28-29 21.25780988785743 28.129086179998886 29.40681482053899 21.206289111604693 30-31 21.579936748711393 27.95252083438074 29.285442387939643 21.18210002896823 32-33 21.369851754298494 28.153394037227276 29.2123666640149 21.264387544459332 34-35 21.499145065896993 28.185689528637592 29.247293736547704 21.06787166891771 36-37 21.472781745892156 28.14231487411553 29.19025465090171 21.194648729090602 38-39 21.32945433142628 28.212030145959073 29.23978078506583 21.218734737548818 40-41 21.52449187674386 28.06103407235785 29.169949969069176 21.24452408182912 42-43 21.39847780977465 28.19969526392454 28.875176179424226 21.52665074687658 44-45 21.512118470319614 28.31644532431908 28.72675702099024 21.44467918437107 46-47 21.56524111849101 28.28809520894945 28.515203076704115 21.631460595855422 48-49 21.472711067363544 28.451943616211313 28.439547101667145 21.635798214757997 50-51 21.550967492676282 28.495105319044416 28.329736787728226 21.624190400551075 52-53 21.63161716637213 28.40177805545024 28.265588740493676 21.70101603768396 54-55 21.57332799368148 28.34872697917944 28.31137804422315 21.766566982915926 56-57 21.61269247545926 28.45175015901569 28.229637521439777 21.70591984408528 58-59 21.561218049344504 28.50898242829213 28.272778595873284 21.657020926490087 60-61 21.702933320070503 28.470951955666568 28.24213517098211 21.58397955328082 62-63 21.620378783267498 28.567254534411678 28.217768389231416 21.594598293089405 64-65 21.58310378308067 28.465055282225045 28.220369590840917 21.731471343853368 66-67 21.693444705404605 28.49923830534955 28.072393552568304 21.73492343667754 68-69 21.58236544464476 28.474301575518375 28.210510602588517 21.732822377248354 70-71 21.639474379374697 28.256774251827675 28.254156584313172 21.849594784484452 72-73 21.63603879152443 28.40467234891168 28.141736485467984 21.817552374095904 74-75 21.52313398326796 28.46484475341342 28.15496930210578 21.857051961212832 76-77 21.610312998486513 28.36437907830473 28.16784329085647 21.857464632352283 78-79 21.58763930015852 28.372603434647363 28.123662074483345 21.916095190710767 80-81 21.65428446502793 28.362133993182265 28.102386207792712 21.881195333997095 82-83 21.652477738353763 28.326348006608786 28.227872584836426 21.79330167020102 84-85 21.695732668997163 28.323824782327055 28.174421650364046 21.80602089831174 86-87 21.54739242669 28.398843209084713 28.239297186808678 21.81446717741661 88-89 21.624362481330476 28.251232106563233 28.228938935545994 21.895466476560298 90-91 21.682284052293483 28.22252707124665 28.292746750333908 21.80244212612596 92-93 21.690085692906134 28.147723030617204 28.304801581610818 21.857389694865848 94-95 21.481299423380804 28.1908080149897 28.39821703199588 21.929675529633613 96-97 21.412192610785024 28.24255248436302 28.50197739069608 21.843277514155872 98-99 21.49831079739906 28.870259666288156 28.566120717146614 21.065308819166173 100-101 22.000744971312848 31.618966355791116 25.884527005122898 20.495761667773138 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3889.0 1 3187.5 2 3489.0 3 4746.5 4 6184.5 5 9233.5 6 11824.0 7 14177.5 8 16050.5 9 16294.0 10 15223.5 11 13974.5 12 15152.0 13 19681.0 14 30291.5 15 44973.0 16 56979.0 17 63219.0 18 64375.5 19 62523.0 20 59615.0 21 57746.5 22 58461.0 23 63629.0 24 74930.5 25 92396.0 26 114590.0 27 139097.5 28 165788.0 29 195092.0 30 223774.0 31 252511.0 32 282084.0 33 309747.0 34 333467.5 35 356636.0 36 381542.5 37 402867.0 38 417045.5 39 424902.0 40 430966.5 41 435238.5 42 435083.5 43 435768.5 44 437169.0 45 436024.0 46 431587.0 47 425002.0 48 417538.5 49 405653.5 50 391401.0 51 375317.5 52 354118.5 53 331137.5 54 309046.5 55 286366.0 56 263070.0 57 237644.5 58 210737.5 59 182571.0 60 153505.0 61 125940.0 62 100081.5 63 77224.0 64 58390.0 65 44232.5 66 33493.5 67 25328.5 68 19502.5 69 14194.0 70 9967.0 71 7154.0 72 5008.5 73 3474.0 74 2353.5 75 1541.5 76 1010.0 77 676.5 78 471.5 79 329.5 80 229.5 81 166.0 82 125.0 83 90.5 84 68.0 85 50.0 86 40.0 87 32.0 88 25.5 89 21.5 90 18.0 91 14.5 92 13.0 93 8.0 94 2.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003723823312413403 3 0.0 4 0.0 5 1.909652980724822E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 3.341892716268439E-4 20-21 5.633760587232647E-4 22-23 2.4352346945499448E-4 24-25 1.5762059014008697E-4 26-27 0.0024897568726130474 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03368749848939057 38-39 0.016996344663220996 40-41 0.022210902363196693 42-43 0.010464738697908373 44-45 0.004059842785222775 46-47 0.005048618347054926 48-49 0.009142364499134867 50-51 0.006925379734728342 52-53 0.01112525441147824 54-55 0.003414037323379895 56-57 0.016209894983037505 58-59 0.012701949884896037 60-61 0.012728721792625575 62-63 0.004781546894285329 64-65 0.006381476461311765 66-67 4.2655855966530504E-4 68-69 8.011241558586469E-4 70-71 0.0011218449207156553 72-73 7.107490187073288E-5 74-75 0.0036257576948152924 76-77 0.004679784099468963 78-79 0.00376627090774291 80-81 6.396760981263134E-4 82-83 0.0031800202450667624 84-85 0.004518531676590174 86-87 0.0013818444978801517 88-89 0.07265133641085118 90-91 7.784674802380226E-4 92-93 0.0 94-95 4.354463928727277E-4 96-97 0.011806334700631221 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 331.0 20-21 1071.0 22-23 2120.0 24-25 5172.0 26-27 6426.0 28-29 9747.0 30-31 26156.0 32-33 33928.0 34-35 48462.0 36-37 74611.0 38-39 86366.0 40-41 88170.0 42-43 99155.0 44-45 116614.0 46-47 117970.0 48-49 107785.0 50-51 97851.0 52-53 94457.0 54-55 102121.0 56-57 108332.0 58-59 109617.0 60-61 107783.0 62-63 101972.0 64-65 107217.0 66-67 115161.0 68-69 117658.0 70-71 117109.0 72-73 112662.0 74-75 112713.0 76-77 115376.0 78-79 124004.0 80-81 128245.0 82-83 122805.0 84-85 123375.0 86-87 131289.0 88-89 139893.0 90-91 152500.0 92-93 158926.0 94-95 185326.0 96-97 249145.0 98-99 836509.0 100-101 5776977.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.7174563681163 #Duplication Level Percentage of deduplicated Percentage of total 1 90.53744906707041 77.6063984008716 2 6.62388644715885 11.355653950433911 3 1.5260592917732485 3.9242976227319573 4 0.577255578318515 1.9792351939107624 5 0.26908481194598755 1.1532632813651482 6 0.14363941642554579 0.7387443246119045 7 0.09250197044226009 0.555032353074445 8 0.05662749222277772 0.3883171675073435 9 0.03934953102404938 0.3035647537793813 >10 0.13068154747062646 1.7294174505489412 >50 0.002678514138855188 0.15094710213105553 >100 7.496659943478983E-4 0.09727664270665254 >500 3.6666014591220035E-5 0.017851756326844343 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.909652980724822E-5 2 0.0 9.54826490362411E-6 0.0 0.0 1.909652980724822E-5 3 0.0 9.54826490362411E-6 0.0 9.54826490362411E-6 1.909652980724822E-5 4 0.0 8.5934384132617E-5 0.0 2.864479471087233E-5 1.909652980724822E-5 5 0.0 9.548264903624111E-5 0.0 2.864479471087233E-5 1.909652980724822E-5 6 0.0 9.548264903624111E-5 0.0 3.819305961449644E-5 1.909652980724822E-5 7 0.0 9.548264903624111E-5 0.0 3.819305961449644E-5 1.909652980724822E-5 8 0.0 1.2412744374711344E-4 0.0 3.819305961449644E-5 1.909652980724822E-5 9 0.0 1.814170331688581E-4 0.0 6.683785432536877E-5 1.909652980724822E-5 10-11 4.774132451812055E-6 1.814170331688581E-4 0.0 1.0025678148805315E-4 1.909652980724822E-5 12-13 9.54826490362411E-6 1.814170331688581E-4 0.0 1.1457917884348932E-4 1.909652980724822E-5 14-15 9.54826490362411E-6 2.3870662259060276E-4 0.0 1.3367570865073755E-4 2.864479471087233E-5 16-17 9.54826490362411E-6 2.3870662259060276E-4 0.0 1.4799810600617372E-4 2.864479471087233E-5 18-19 9.54826490362411E-6 2.5302901994603895E-4 0.0 1.71868768265234E-4 2.864479471087233E-5 20-21 9.54826490362411E-6 3.0077034446415946E-4 0.0 1.814170331688581E-4 2.864479471087233E-5 22-23 4.296719206630849E-5 3.5805993388590414E-4 0.0 2.148359603315425E-4 3.819305961449644E-5 24-25 7.638611922899289E-5 4.0102712595221267E-4 0.0 2.4825488749422687E-4 4.7741324518120556E-5 26-27 8.116025168080494E-5 4.201236557594609E-4 0.0 3.0554447691597155E-4 7.638611922899289E-5 28-29 8.5934384132617E-5 4.201236557594609E-4 0.0 8.593438413261699E-4 7.638611922899289E-5 30-31 9.548264903624111E-5 4.29671920663085E-4 0.0 0.002009909762212875 7.638611922899289E-5 32-33 1.1457917884348932E-4 4.29671920663085E-4 0.0 0.005638250425590038 9.548264903624111E-5 34-35 1.1935331129530138E-4 4.630908478257694E-4 0.0 0.009997033354094444 1.1457917884348932E-4 36-37 1.2412744374711344E-4 4.965097749884537E-4 0.0 0.016255920998420048 1.1457917884348932E-4 38-39 1.2412744374711344E-4 5.15606304795702E-4 0.0 0.025641865398682552 1.1457917884348932E-4 40-41 1.2412744374711344E-4 5.442510995065744E-4 0.0 0.03629772903112706 1.1935331129530138E-4 42-43 1.2412744374711344E-4 5.537993644101984E-4 0.0 0.04564548037177506 1.289015761989255E-4 44-45 1.2412744374711344E-4 6.397337485428154E-4 0.0 0.05649708343474387 1.384498411025496E-4 46-47 1.2412744374711344E-4 7.161198677718083E-4 0.0 0.06851357481595481 1.4322397355436166E-4 48-49 1.2412744374711344E-4 7.161198677718083E-4 0.0 0.0799571703029483 1.4322397355436166E-4 50-51 1.2412744374711344E-4 8.259249141634856E-4 0.0 0.09043161690222395 1.4322397355436166E-4 52-53 1.384498411025496E-4 8.354731790671097E-4 0.0 0.10115431838899383 1.5277223845798577E-4 54-55 1.4322397355436166E-4 8.402473115189218E-4 0.0 0.11186747161086008 1.6709463581342194E-4 56-57 1.4799810600617372E-4 8.497955764225458E-4 0.0 0.12012672075249493 1.7664290071704605E-4 58-59 1.5277223845798577E-4 8.5934384132617E-4 0.0 0.12801836169534025 1.814170331688581E-4 60-61 1.6232050336160989E-4 8.64117973777982E-4 0.0 0.13612483859851715 1.814170331688581E-4 62-63 1.6232050336160989E-4 8.927627684888544E-4 0.0 0.14395918995194074 1.9096529807248222E-4 64-65 1.6232050336160989E-4 9.54826490362411E-4 0.0 0.15126838673566498 1.9096529807248222E-4 66-67 1.6232050336160989E-4 9.54826490362411E-4 0.0 0.15886403146649797 1.9096529807248222E-4 68-69 1.71868768265234E-4 9.786971526214714E-4 0.0 0.16693231531006034 1.9096529807248222E-4 70-71 1.7664290071704605E-4 9.977936824287195E-4 0.0 0.17466163574954405 2.1006182787973045E-4 72-73 1.8619116562067017E-4 0.0010025678148805315 0.0 0.18086800793689972 2.148359603315425E-4 74-75 1.9096529807248222E-4 0.001026438477139592 0.0 0.18647283943532705 2.1961009278335456E-4 76-77 1.9096529807248222E-4 0.001040760874495028 0.0 0.19139974412559713 2.1961009278335456E-4 78-79 1.9096529807248222E-4 0.0010503091393986523 0.0 0.19581581664352327 2.2915835768697865E-4 80-81 1.9096529807248222E-4 0.0010550832718504643 0.0 0.19815036741245937 2.2915835768697865E-4 82-83 1.9096529807248222E-4 0.0010598574043022763 0.0 0.19945370557180403 2.3870662259060276E-4 84-85 1.9096529807248222E-4 0.0010789539341095244 0.0 0.20072362480398603 2.3870662259060276E-4 86-87 1.9096529807248222E-4 0.0010789539341095244 0.0 0.20122968284387813 2.4348075504241481E-4 88-89 1.9096529807248222E-4 0.0011935331129530138 0.0 0.20130606896310713 2.4825488749422687E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13530 0.0 50.677113 1 GTATCAA 24155 0.0 35.048763 1 TCAACGC 30355 0.0 27.383026 4 ATCAACG 30415 0.0 27.356283 3 CAACGCA 30975 0.0 26.821533 5 TATCAAC 31610 0.0 26.428452 2 AACGCAG 31915 0.0 26.174511 6 ACGCAGA 36840 0.0 22.57401 7 CGCAGAG 37415 0.0 22.216005 8 GTACATG 33950 0.0 21.320257 1 TACATGG 34355 0.0 20.634258 2 ACATGGG 34550 0.0 20.156569 3 GCAGAGT 43685 0.0 18.80902 9 GAGTACT 24740 0.0 18.282682 12-13 CATGGGG 24385 0.0 18.200151 4 AGAGTAC 40325 0.0 17.717354 10-11 CAGAGTA 43290 0.0 17.246416 10-11 GTGGTAT 6155 0.0 17.184973 1 TGGTATC 5760 0.0 16.923187 2 ATGGGGG 15130 0.0 16.338844 5 >>END_MODULE