##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139855_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16332317 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.24492801603104 31.0 31.0 34.0 28.0 34.0 2 31.326210726867473 31.0 31.0 34.0 28.0 34.0 3 31.328616754132312 31.0 31.0 34.0 28.0 34.0 4 35.031611069023455 37.0 35.0 37.0 32.0 37.0 5 34.74667446143741 37.0 35.0 37.0 32.0 37.0 6 34.811859823685765 37.0 35.0 37.0 31.0 37.0 7 34.671671325017755 37.0 35.0 37.0 30.0 37.0 8 34.65792955157556 37.0 35.0 37.0 30.0 37.0 9 36.11721374254492 39.0 35.0 39.0 30.0 39.0 10-11 36.04550992366852 39.0 35.0 39.0 30.0 39.0 12-13 35.999772353181726 39.0 35.0 39.0 30.0 39.0 14-15 37.077899296223556 39.0 36.0 41.0 30.0 41.0 16-17 37.11838543790204 39.0 36.0 41.0 31.0 41.0 18-19 37.18370032861841 39.5 36.0 41.0 31.0 41.0 20-21 37.24188689621706 40.0 36.0 41.0 31.0 41.0 22-23 37.217056777941394 40.0 36.0 41.0 31.0 41.0 24-25 37.188939371142354 39.5 36.0 41.0 30.0 41.0 26-27 37.09825453366275 39.0 36.0 41.0 30.0 41.0 28-29 37.052117723652074 39.0 36.0 41.0 30.0 41.0 30-31 36.9537635359045 39.0 36.0 41.0 30.0 41.0 32-33 36.84788786217895 39.0 35.0 41.0 30.0 41.0 34-35 36.79226511680574 39.0 35.0 41.0 30.0 41.0 36-37 36.77400368200436 39.0 35.0 41.0 30.0 41.0 38-39 36.72368176193055 39.0 35.0 41.0 30.0 41.0 40-41 36.70591018201384 39.0 35.0 41.0 30.0 41.0 42-43 36.67054139681011 39.0 35.0 41.0 30.0 41.0 44-45 36.64057660412945 39.0 35.0 41.0 30.0 41.0 46-47 36.60127059330997 39.0 35.0 41.0 30.0 41.0 48-49 36.53887542258415 39.0 35.0 41.0 29.5 41.0 50-51 36.483410054406136 39.0 35.0 40.0 29.0 41.0 52-53 36.41730913459443 39.0 35.0 40.0 29.0 41.0 54-55 36.32040565457585 38.0 34.5 40.0 29.0 41.0 56-57 36.22379054341866 38.0 34.0 40.0 29.0 41.0 58-59 36.08596769799499 38.0 34.0 40.0 28.5 41.0 60-61 35.916785190916315 38.0 34.0 40.0 28.0 41.0 62-63 35.74959152169103 38.0 34.0 40.0 28.0 41.0 64-65 35.56156889343224 37.0 34.0 40.0 28.0 41.0 66-67 35.34132342927758 37.0 33.5 40.0 28.0 41.0 68-69 35.09839472536777 36.0 33.0 39.0 28.0 41.0 70-71 34.867880402103054 36.0 33.0 39.0 28.0 41.0 72-73 34.58802613229005 35.5 33.0 39.0 28.0 40.0 74-75 34.314231822529095 35.0 33.0 38.0 28.0 40.0 76-77 34.033024850912206 35.0 32.0 37.0 28.0 39.5 78-79 33.76134909694869 35.0 32.0 37.0 27.5 39.0 80-81 33.51157160472763 35.0 32.0 36.5 27.0 39.0 82-83 33.39882143618529 35.0 32.0 36.0 27.5 38.0 84-85 33.3687315311156 35.0 32.0 36.0 28.0 37.0 86-87 33.2140680953876 35.0 32.0 35.5 28.0 37.0 88-89 33.07629925309929 35.0 32.0 35.0 28.0 36.5 90-91 33.001577597218684 35.0 32.0 35.0 28.0 36.0 92-93 32.95486042198027 35.0 32.0 35.0 28.5 36.0 94-95 32.93064174527108 34.5 32.0 35.0 29.0 36.0 96-97 32.98442581885931 34.0 32.0 35.0 29.0 35.5 98-99 33.08351980272377 34.0 32.0 35.0 29.0 35.0 100 32.74387520139111 34.0 32.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 2.0 14 11.0 15 27.0 16 68.0 17 258.0 18 1604.0 19 7952.0 20 25974.0 21 60032.0 22 103094.0 23 145315.0 24 187052.0 25 227610.0 26 269332.0 27 309413.0 28 354329.0 29 403999.0 30 465947.0 31 546466.0 32 656152.0 33 803284.0 34 1017642.0 35 1322375.0 36 1828080.0 37 2690973.0 38 3154421.0 39 1686860.0 40 64044.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.55119674691595 21.007031641621946 14.387315651539215 24.054455959922894 2 14.492169114767977 22.403520578249857 40.49430953366874 22.610000773313423 3 17.000183664874253 27.986460365101763 31.458381778337746 23.554974191686235 4 12.102762110946538 19.179251078075517 39.30832436149068 29.409662449487268 5 12.048774022271585 39.22966958080428 35.9970988736627 12.724457523261435 6 28.018432824030988 39.75825816600311 19.264777167027162 12.958531842938745 7 24.735663206717554 33.93840037715729 24.34190516238026 16.98403125374489 8 24.289149461679997 36.685342893778554 21.671354858295864 17.35415278624559 9 25.761415724485794 16.096779614061223 21.54135703929566 36.600447622157326 10-11 23.517876286709548 27.19086826899667 29.61604567751727 19.67520976677651 12-13 24.6847055853553 25.119892133740617 29.63457830974524 20.560823971158843 14-15 21.93053266041679 26.10257276622963 27.539659149699602 24.427235423653975 16-17 20.897303596245894 29.130038100199375 28.200154076015977 21.772504227538754 18-19 20.952579467069153 28.176249481386574 30.21866251484043 20.65250853670384 20-21 22.12837638565772 27.182060735682654 30.01831891021099 20.67124396844864 22-23 21.74105192224727 27.11818613898831 29.927267297887795 21.213494640876625 24-25 21.282001529783 27.38346894300277 30.038869440105444 21.295660087108786 26-27 21.248447763293278 27.522901855571586 29.887709829209204 21.340940551925936 28-29 21.22341028250205 27.521694625148218 29.953985731193416 21.300909361156307 30-31 21.535955076715094 27.440399271082693 29.77942387304689 21.24422177915532 32-33 21.297784374849314 27.65287134997989 29.664014347304995 21.385329927865797 34-35 21.49275697371237 27.698598818343722 29.66917901441643 21.139465193527474 36-37 21.462125369969325 27.61259818122082 29.57459321640022 21.350683232409633 38-39 21.342127647300188 27.700361492011567 29.591416874667082 21.366093986021166 40-41 21.561879351622846 27.58529446533578 29.46200516069506 21.39082102234632 42-43 21.46582638364174 27.723795101125337 29.182005094867954 21.628373420364973 44-45 21.544466501809232 27.890169598041346 28.977331829868437 21.58803207028098 46-47 21.684061544383734 27.91893968179171 28.59202537967469 21.804973394149865 48-49 21.66770217566498 28.116010988689915 28.427796757719843 21.78849007792526 50-51 21.670601313645566 28.204691768288313 28.26706139407294 21.857645523993178 52-53 21.79126296887628 28.072703157686263 28.237131541020716 21.89890233241674 54-55 21.723881720100785 28.042839441507443 28.33818772516013 21.89509111323164 56-57 21.756516107289745 28.110818673530545 28.254063303921477 21.87860191525823 58-59 21.742633118992572 28.154915840639898 28.264820903339356 21.837630137028178 60-61 21.845105216903406 28.13925717645648 28.257836814893434 21.757800791746682 62-63 21.754850377907843 28.20463786080145 28.238129329900286 21.802382431390424 64-65 21.708786873810496 28.125936251698885 28.24895823060811 21.91631864388251 66-67 21.821872289891203 28.208824608937206 28.080840894919678 21.888462206251916 68-69 21.773845620642618 28.125979785748374 28.192875778196214 21.907298815412798 70-71 21.790827704931868 27.92239084110743 28.23702555402141 22.049755899939292 72-73 21.824587658631696 28.059417597022478 28.11571549380733 22.000279250538497 74-75 21.6589766927629 28.170695438339838 28.172315805013586 21.998012063883678 76-77 21.802605710962776 28.093438830146034 28.13823751162682 21.96571794726437 78-79 21.742660932409535 28.144500175945797 28.08356109494842 22.02927779669625 80-81 21.772789819466002 28.18221528876329 28.062959777111956 21.982035114658753 82-83 21.83313622058662 28.080983145525074 28.191778447189737 21.894102186698568 84-85 21.839263404827744 28.15543951070752 28.069766555448698 21.935530529016038 86-87 21.675288920547104 28.233303046675857 28.182586386113734 21.908821646663306 88-89 21.770422836006713 28.141347044795424 28.11152663241537 21.976703486782494 90-91 21.799165323589072 28.155536200572428 28.182985348875984 21.862313126962515 92-93 21.76954340171391 28.170222101266994 28.166327315418172 21.893907181600923 94-95 21.594068452790328 28.23258158792143 28.243030534583944 21.930319424704297 96-97 21.624493778597305 28.365515062553133 28.273201085744326 21.73679007310524 98-99 22.563698019926974 30.336713007437044 28.47589843103449 18.623690541601494 100 21.750651134726382 31.25272755561684 22.22853996135146 24.76808134830532 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4192.0 1 4192.0 2 6534.5 3 9004.5 4 11307.0 5 18750.5 6 25468.5 7 30307.0 8 33112.5 9 31198.5 10 25871.0 11 20194.5 12 20659.0 13 28452.5 14 49859.5 15 80826.5 16 105028.0 17 117180.5 18 120285.0 19 116815.5 20 108573.5 21 100350.5 22 97787.5 23 105002.0 24 122340.5 25 149345.0 26 183662.5 27 219235.5 28 254303.0 29 292874.5 30 332371.0 31 371018.0 32 413826.5 33 455661.0 34 494274.5 35 530691.0 36 568690.5 37 603306.5 38 626328.5 39 640269.5 40 651830.5 41 660734.5 42 664158.5 43 673880.5 44 685023.5 45 691230.0 46 691765.5 47 687015.5 48 682486.5 49 671379.0 50 654274.5 51 630468.0 52 598208.0 53 561035.5 54 520619.5 55 481227.0 56 442317.0 57 400107.0 58 359208.5 59 318276.0 60 271536.0 61 221534.5 62 175544.0 63 138568.0 64 108056.0 65 83794.5 66 63861.0 67 48839.5 68 38207.0 69 29259.5 70 22178.5 71 16910.0 72 12913.0 73 9897.5 74 7324.0 75 5380.5 76 3979.0 77 2881.0 78 2124.0 79 1584.0 80 1144.0 81 838.5 82 654.5 83 447.5 84 307.5 85 239.5 86 189.0 87 147.0 88 101.5 89 67.5 90 51.5 91 45.5 92 34.5 93 18.5 94 7.5 95 3.5 96 3.0 97 3.0 98 2.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.022434049008478098 4 0.015454022843176506 5 0.08044174014011607 6 0.04873772655771989 7 0.010592495847343644 8 0.005265633773824008 9 0.015141758514728803 10-11 0.020869665951254803 12-13 0.0014725406076798533 14-15 0.00745760690292749 16-17 7.286167663779732E-4 18-19 0.009254657498994172 20-21 0.0020805020070563027 22-23 0.0016105502885277836 24-25 0.011644975506386721 26-27 8.613635914776441E-4 28-29 0.001402497265053273 30-31 0.004913675777056542 32-33 0.024643879785328015 34-35 3.6527591037840024E-4 36-37 9.113213896180507E-5 38-39 9.001955991909523E-4 40-41 0.003310655450225768 42-43 0.014244734566805299 44-45 9.230185508399272E-4 46-47 0.0018284446993869334 48-49 8.741775124357635E-5 50-51 0.0010959235693372973 52-53 4.7825725533459835E-4 54-55 3.545918937581502E-4 56-57 1.3353831229993634E-4 58-59 0.009813321899030265 60-61 0.006848065347807449 62-63 6.112474107941708E-4 64-65 0.010614553597519005 66-67 0.0012274145494447586 68-69 0.00522085967947761 70-71 0.0049627950461700035 72-73 0.02361915456316856 74-75 5.075821647653095E-4 76-77 0.005795049139804553 78-79 6.399479338361031E-5 80-81 6.484577567057827E-5 82-83 0.0 84-85 0.0 86-87 0.01207273315887447 88-89 2.2228468991969708E-4 90-91 1.8235718545057118E-4 92-93 1.3247569159376381E-5 94-95 2.0241138530756927E-4 96-97 3.916279346639284E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 9713.0 20-21 18653.0 22-23 21112.0 24-25 23096.0 26-27 28765.0 28-29 44927.0 30-31 69739.0 32-33 78335.0 34-35 97871.0 36-37 126462.0 38-39 158821.0 40-41 155572.0 42-43 173261.0 44-45 206584.0 46-47 201250.0 48-49 184923.0 50-51 163880.0 52-53 149005.0 54-55 152699.0 56-57 159153.0 58-59 164968.0 60-61 163406.0 62-63 148920.0 64-65 149157.0 66-67 158479.0 68-69 163627.0 70-71 166054.0 72-73 151524.0 74-75 147429.0 76-77 153989.0 78-79 162087.0 80-81 167596.0 82-83 157028.0 84-85 153389.0 86-87 160867.0 88-89 176900.0 90-91 190965.0 92-93 201501.0 94-95 231700.0 96-97 523078.0 98-99 929316.0 100-101 9486516.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.67222029598935 #Duplication Level Percentage of deduplicated Percentage of total 1 89.57254916994138 74.94734066620671 2 7.070184757301689 11.831561130925856 3 1.7817394014273977 4.472462751188322 4 0.7048997516474973 2.3592210922575028 5 0.3262688271585168 1.3649818590860743 6 0.1816173130067642 0.9117794294080575 7 0.10240126730239882 0.5997698977420363 8 0.06465559856679164 0.4327901989319714 9 0.0446949783592064 0.33657552678563946 >10 0.14378115401329414 1.8786971297152986 >50 0.004114064870768212 0.23332026918821613 >100 0.002771866619246518 0.4366584862579857 >500 2.6056682811911424E-4 0.13960362088640585 >1k 6.128295699176318E-5 0.05523794141991887 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.28598097869396E-5 0.0 0.0 0.0 3 0.0 4.28598097869396E-5 0.0 0.0 0.0 4 0.0 7.34739596347536E-5 0.0 0.0 0.0 5 0.0 7.34739596347536E-5 0.0 0.0 0.0 6 0.0 7.34739596347536E-5 0.0 0.0 6.1228299695628E-6 7 0.0 7.95967896043164E-5 0.0 0.0 6.1228299695628E-6 8 6.1228299695628E-6 9.1842449543442E-5 0.0 0.0 6.1228299695628E-6 9 6.1228299695628E-6 1.347022593303816E-4 0.0 1.22456599391256E-5 6.1228299695628E-6 10-11 6.1228299695628E-6 1.408250892999444E-4 0.0 1.22456599391256E-5 6.1228299695628E-6 12-13 6.1228299695628E-6 1.408250892999444E-4 0.0 1.22456599391256E-5 6.1228299695628E-6 14-15 9.1842449543442E-6 2.020533889955724E-4 0.0 1.22456599391256E-5 9.1842449543442E-6 16-17 3.0614149847814E-5 2.112376339499166E-4 0.0 1.5307074923906998E-5 1.83684899086884E-5 18-19 3.6736979817376806E-5 2.357289538281678E-4 0.0 1.83684899086884E-5 3.0614149847814E-5 20-21 4.5921224771721E-5 2.632816886912004E-4 0.0 3.0614149847813996E-5 5.51054697260652E-5 22-23 4.89826397565024E-5 3.092029134629214E-4 0.0 5.2044054741283804E-5 7.347395963475361E-5 24-25 5.2044054741283804E-5 3.245099883868284E-4 0.0 1.0408810948256761E-4 8.878103455866061E-5 26-27 6.1228299695628E-5 3.306328183563912E-4 0.0 1.714392391477584E-4 9.79652795130048E-5 28-29 6.1228299695628E-5 3.428784782955168E-4 0.0 7.163711064388476E-4 1.07149524467349E-4 30-31 6.1228299695628E-5 3.7961545811289357E-4 0.0 0.0022378943538752033 1.193951844064746E-4 32-33 6.1228299695628E-5 3.7961545811289357E-4 0.0 0.004732947566472044 1.255180143760374E-4 34-35 6.1228299695628E-5 4.5921224771721E-4 0.0 0.007919880565629481 1.285794293608188E-4 36-37 6.73511296651908E-5 5.388090373215264E-4 0.0 0.01239873068836467 1.285794293608188E-4 38-39 7.34739596347536E-5 5.479932822758706E-4 0.0 0.019733880991900904 1.285794293608188E-4 40-41 7.95967896043164E-5 6.153444119410614E-4 0.0 0.02753436637312391 1.285794293608188E-4 42-43 7.95967896043164E-5 6.27590071880187E-4 0.0 0.03448071697359291 1.285794293608188E-4 44-45 7.95967896043164E-5 7.010640315149406E-4 0.0 0.04200873642117037 1.285794293608188E-4 46-47 8.57196195738792E-5 7.745379911496942E-4 0.0 0.05001739802135852 1.347022593303816E-4 48-49 8.57196195738792E-5 7.898450660736012E-4 0.0 0.058130147731029216 1.408250892999444E-4 50-51 8.57196195738792E-5 9.03117420510513E-4 0.0 0.06644495082969551 1.408250892999444E-4 52-53 8.57196195738792E-5 9.123016654648572E-4 0.0 0.07421788347605549 1.469479192695072E-4 54-55 8.57196195738792E-5 9.214859104192014E-4 0.0 0.08094075078263543 1.5613216422385138E-4 56-57 8.57196195738792E-5 9.429158153126712E-4 0.0 0.08612066493688555 1.591935792086328E-4 58-59 9.1842449543442E-5 9.551614752517967E-4 0.0 0.0914812025752378 1.622549941934142E-4 60-61 9.490386452822339E-5 9.796527951300479E-4 0.0 0.09682031030869656 1.653164091781956E-4 62-63 1.010266944977862E-4 9.980212850387363E-4 0.0 0.10219921643695748 1.653164091781956E-4 64-65 1.040881094825676E-4 0.0011143550544604297 0.0 0.10699033088814036 1.653164091781956E-4 66-67 1.07149524467349E-4 0.0011357849593538992 0.0 0.11182736656409498 1.68377824162977E-4 68-69 1.102109394521304E-4 0.0011755833541560576 0.0 0.1165970511103844 1.714392391477584E-4 70-71 1.102109394521304E-4 0.0012031360890190903 0.0 0.12105447132822611 1.714392391477584E-4 72-73 1.102109394521304E-4 0.001209258918988653 0.0 0.12488736288917243 1.775620691173212E-4 74-75 1.102109394521304E-4 0.0012429344838212485 0.0 0.12773141741003435 1.83684899086884E-4 76-77 1.102109394521304E-4 0.0013133470284712205 0.0 0.13026933043241812 1.83684899086884E-4 78-79 1.102109394521304E-4 0.0013347769333646904 0.0 0.13209699517833262 1.83684899086884E-4 80-81 1.163337694216932E-4 0.0013347769333646904 0.0 0.13261437431076067 1.8980772905644679E-4 82-83 1.163337694216932E-4 0.0013439611783190347 0.0 0.13292051580923883 1.98991974010791E-4 84-85 1.163337694216932E-4 0.0013531454232733788 0.0 0.1330062354288127 2.020533889955724E-4 86-87 1.163337694216932E-4 0.0013806981581364114 0.0 0.13306440231352357 2.051148039803538E-4 88 1.163337694216932E-4 0.001500093342542886 0.0 0.13306746372850833 2.081762189651352E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 27760 0.0 52.37672 1 GTATCAA 50555 0.0 35.806797 1 ATCAACG 66070 0.0 26.888481 3 TCAACGC 66260 0.0 26.781824 4 TATCAAC 67260 0.0 26.555866 2 CAACGCA 67240 0.0 26.382717 5 AACGCAG 69405 0.0 25.608173 6 ACGCAGA 79640 0.0 22.252125 7 CGCAGAG 80685 0.0 21.951977 8 GTACATG 67270 0.0 20.27648 1 TACATGG 67160 0.0 19.981573 2 ACATGGG 68060 0.0 19.400917 3 GCAGAGT 90420 0.0 19.244974 9 GAGTACT 50055 0.0 18.370344 12-13 AGAGTAC 83620 0.0 18.008253 10-11 CAGAGTA 88345 0.0 17.732 10-11 TGGTATC 10465 0.0 17.587635 2 GTGGTAT 11360 0.0 17.317488 1 AGTACTT 54170 0.0 17.080448 12-13 CATGGGG 40060 0.0 16.940939 4 >>END_MODULE