##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139854_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15130078 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.223167058358854 31.0 31.0 34.0 28.0 34.0 2 31.304283031455622 31.0 31.0 34.0 28.0 34.0 3 31.313431166713087 31.0 31.0 34.0 28.0 34.0 4 35.010019049472184 37.0 35.0 37.0 32.0 37.0 5 34.71687350190792 37.0 35.0 37.0 31.0 37.0 6 34.78147396199808 37.0 35.0 37.0 31.0 37.0 7 34.63925162844501 37.0 35.0 37.0 30.0 37.0 8 34.622498178793265 37.0 35.0 37.0 30.0 37.0 9 36.07968577557895 39.0 35.0 39.0 30.0 39.0 10-11 36.010361546054156 39.0 35.0 39.0 30.0 39.0 12-13 35.967713451312015 39.0 35.0 39.0 30.0 39.0 14-15 37.04891101685001 39.0 36.0 41.0 30.0 41.0 16-17 37.089767713028316 39.0 36.0 41.0 30.0 41.0 18-19 37.151169775859714 39.5 36.0 41.0 30.0 41.0 20-21 37.21035595337608 40.0 36.0 41.0 30.0 41.0 22-23 37.1903940614225 40.0 36.0 41.0 30.0 41.0 24-25 37.16314162293351 39.5 36.0 41.0 30.0 41.0 26-27 37.075533683313466 39.0 36.0 41.0 30.0 41.0 28-29 37.03449857428929 39.0 36.0 41.0 30.0 41.0 30-31 36.93956051568945 39.0 36.0 41.0 30.0 41.0 32-33 36.83827236270834 39.0 35.0 41.0 30.0 41.0 34-35 36.784618748458094 39.0 35.0 41.0 30.0 41.0 36-37 36.76766575728601 39.0 35.0 41.0 30.0 41.0 38-39 36.720854298015155 39.0 35.0 41.0 30.0 41.0 40-41 36.70446696860064 39.0 35.0 41.0 30.0 41.0 42-43 36.6699753414411 39.0 35.0 41.0 30.0 41.0 44-45 36.64239792161857 39.0 35.0 41.0 30.0 41.0 46-47 36.606711587606384 39.0 35.0 41.0 30.0 41.0 48-49 36.549394552968515 39.0 35.0 41.0 29.5 41.0 50-51 36.49814033789887 39.0 35.0 40.0 29.0 41.0 52-53 36.433025553192394 39.0 35.0 40.0 29.0 41.0 54-55 36.343310567514294 38.5 34.5 40.0 29.0 41.0 56-57 36.253684203338274 38.0 34.0 40.0 29.0 41.0 58-59 36.12156982335438 38.0 34.0 40.0 28.5 41.0 60-61 35.96032488433028 38.0 34.0 40.0 28.0 41.0 62-63 35.79789674724308 38.0 34.0 40.0 28.0 41.0 64-65 35.61909739997304 37.0 34.0 40.0 28.0 41.0 66-67 35.40324087990354 37.0 34.0 40.0 28.0 41.0 68-69 35.16523842766438 36.5 33.0 39.0 28.0 41.0 70-71 34.934405454829886 36.0 33.0 39.0 28.0 41.0 72-73 34.651091323071505 36.0 33.0 39.0 28.0 40.0 74-75 34.37647400773098 35.0 33.0 38.5 28.0 40.0 76-77 34.094100577670886 35.0 32.0 37.5 28.0 39.5 78-79 33.81594325360447 35.0 32.0 37.0 27.5 39.0 80-81 33.563920485353485 35.0 32.0 36.5 27.0 39.0 82-83 33.44165507759893 35.0 32.0 36.0 27.5 38.5 84-85 33.400850370624156 35.0 32.0 36.0 28.0 37.0 86-87 33.240666531171954 35.0 32.0 35.5 28.0 37.0 88-89 33.09810553334431 35.0 32.0 35.0 28.0 36.5 90-91 33.01755965283152 35.0 32.0 35.0 28.0 36.0 92-93 32.967213524090155 35.0 32.0 35.0 29.0 36.0 94-95 32.94149538263743 34.5 32.0 35.0 29.0 36.0 96-97 32.9911586427168 34.0 32.0 35.0 29.0 35.5 98-99 33.09016558474356 34.0 32.0 35.0 29.0 35.0 100 32.74633735880403 34.0 32.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 5.0 14 13.0 15 28.0 16 67.0 17 237.0 18 1627.0 19 8191.0 20 26160.0 21 59164.0 22 100935.0 23 141585.0 24 178636.0 25 216820.0 26 252941.0 27 288132.0 28 328230.0 29 372129.0 30 428290.0 31 501241.0 32 600559.0 33 733447.0 34 928566.0 35 1204204.0 36 1661801.0 37 2467941.0 38 2973838.0 39 1595467.0 40 59824.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.130130194966604 21.19953380279996 14.431538290813833 24.238797711419597 2 14.31628442364937 22.490756491803943 40.58025345275814 22.612705631788547 3 16.854680866381173 27.88034309740544 31.543812058386774 23.721163977826613 4 12.013597997225773 19.373470697951376 39.60323155702052 29.009699747802326 5 12.007876632931245 39.23779619642237 36.23124148580496 12.523085684841417 6 27.863849029494787 39.975693561392504 19.483801284185105 12.67665612492761 7 24.73556709859076 33.96452802646024 24.462784067191826 16.83712080775717 8 24.052630705774863 36.969496957006 21.873243273022496 17.10462906419664 9 25.53639851175495 16.40287455913368 21.655029767875682 36.405697161235686 10-11 23.282831606544985 27.3636839937821 29.867238157901305 19.486246241771614 12-13 24.452801947619974 25.199838385718405 29.815888471076153 20.531471195585468 14-15 21.685375842590425 26.28607490015824 27.595852716713793 24.432696540537542 16-17 20.829243355912023 29.360821418490918 28.24154318578284 21.568392039814213 18-19 20.863047522542395 28.477329370009286 30.131623868914183 20.52799923853414 20-21 21.973140761036248 27.56698634737055 29.879618277847005 20.5802546137462 22-23 21.57717993781979 27.48106763656817 29.79016505650243 21.151587369109613 24-25 21.19532710965356 27.6456915372753 29.935633722274353 21.223347630796784 26-27 21.172048693594192 27.830358833602986 29.739436839091542 21.25815563371128 28-29 21.1377958804314 27.879785072988355 29.80926873153646 21.17315031504378 30-31 21.441843786238408 27.741335957874195 29.672860700589 21.143959555298395 32-33 21.246061359735297 27.954085376435838 29.532196491171142 21.267656772657727 34-35 21.34998579523833 27.991816467743874 29.570171590018653 21.088026146999145 36-37 21.3621176371643 27.898491928625642 29.49481094831944 21.24457948589063 38-39 21.213709698498604 28.00797623925055 29.510414427616066 21.267899634634777 40-41 21.475043850729683 27.896022239896478 29.35947145575798 21.269462453615855 42-43 21.35753005983905 28.00589767859993 29.153346715907126 21.483225545653898 44-45 21.435299349288393 28.17448049417117 28.930970567099624 21.459249589440812 46-47 21.548221820190847 28.164352555207145 28.636895080126067 21.650530544475938 48-49 21.530768504623165 28.309656727402466 28.555357923233814 21.604216844740552 50-51 21.517366163340313 28.395522191584625 28.4248226832098 21.66228896186526 52-53 21.65415054901076 28.27918112619152 28.378473117784424 21.68819520701329 54-55 21.602979416927383 28.225116927679416 28.45486694068248 21.717036714710723 56-57 21.621123776145854 28.312721741701136 28.383741745222125 21.682412736930885 58-59 21.61146513206087 28.360357768224038 28.38336143025431 21.644815669460783 60-61 21.685709290993927 28.336348332349797 28.376426410039223 21.601515966617054 62-63 21.572770731790804 28.400754310635364 28.386953181545138 21.639521776028698 64-65 21.569581711436232 28.31605866669343 28.380623112681057 21.733736509189285 66-67 21.666148605507328 28.420205351959936 28.20148114224756 21.712164900285178 68-69 21.649118552790917 28.36124936916178 28.287159863330206 21.702472214717098 70-71 21.622210604360355 28.149430176627437 28.372925723788473 21.855433495223735 72-73 21.643875406209922 28.227915202696792 28.302811808895868 21.82539758219742 74-75 21.492728461238737 28.37937654983006 28.29004108332694 21.83785390560426 76-77 21.62498039444676 28.292973335768608 28.288801851171613 21.79324441861302 78-79 21.61451128177194 28.35228435090092 28.189534610767257 21.843669756559887 80-81 21.58631208966112 28.3625695216835 28.177577518307277 21.873540870348098 82-83 21.68018693557995 28.309761079659516 28.290169088286525 21.719882896474 84-85 21.67437954177371 28.318741667262444 28.23780130143953 21.769077489524317 86-87 21.528049751847888 28.357737751652156 28.325704970382137 21.78850752611782 88-89 21.629596681254494 28.3209419532001 28.25230075304056 21.797160612504847 90-91 21.654151299698576 28.324893160353547 28.333976461553807 21.68697907839407 92-93 21.65049448527483 28.332458718670605 28.28803877050559 21.72900802554897 94-95 21.485597560889495 28.409612930791234 28.343666057998227 21.761123450321037 96-97 21.50271422023463 28.54931556062089 28.44575647584951 21.50221374329497 98-99 22.451045268895246 30.491009225586353 28.647266543244854 18.41067896227355 100 21.63294833764931 31.461073373111432 22.37335200437574 24.532626284863518 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4799.0 1 4627.5 2 5751.5 3 7159.0 4 8810.0 5 14327.5 6 19517.5 7 23150.5 8 25321.0 9 24114.0 10 20331.0 11 16315.5 12 16789.5 13 22733.5 14 39234.5 15 63536.5 16 83033.5 17 93450.0 18 97096.5 19 95738.0 20 90783.0 21 86154.0 22 85938.0 23 94236.0 24 112409.0 25 139595.5 26 175017.5 27 212259.0 28 247406.0 29 285632.0 30 322701.5 31 358233.5 32 398971.5 33 438426.0 34 476086.0 35 511017.5 36 546036.0 37 577865.5 38 597152.5 39 610746.5 40 625692.0 41 636422.0 42 640159.5 43 645805.0 44 649093.0 45 649659.5 46 647160.0 47 639112.5 48 630234.5 49 615748.0 50 595956.5 51 571026.0 52 538174.0 53 500138.5 54 461285.5 55 423518.5 56 386673.5 57 348627.5 58 310753.0 59 274109.0 60 234099.5 61 191117.0 62 150587.5 63 117465.5 64 91152.5 65 70174.5 66 53596.5 67 41332.5 68 31971.5 69 24252.0 70 18376.0 71 13883.5 72 10497.5 73 7920.5 74 5825.5 75 4340.0 76 3252.5 77 2384.0 78 1749.0 79 1265.5 80 947.5 81 730.5 82 567.5 83 401.5 84 287.0 85 222.0 86 181.0 87 142.0 88 84.5 89 44.0 90 30.0 91 26.5 92 21.5 93 11.0 94 3.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.021777812381403455 4 0.014950352536186528 5 0.07893548202461349 6 0.048486200798171696 7 0.010383290819782951 8 0.004857873171572546 9 0.014494307299671555 10-11 0.020512121616293056 12-13 0.0015003227346217251 14-15 0.007521441726870146 16-17 6.906772060263007E-4 18-19 0.00900854575898419 20-21 0.002014392420380478 22-23 0.0013577871460675288 24-25 0.011546477573255387 26-27 8.568111772811403E-4 28-29 0.001457413334233957 30-31 0.0045723555914936025 32-33 0.024763891759036642 34-35 3.9064625822849195E-4 36-37 8.471333042868267E-5 38-39 8.95185130605973E-4 40-41 0.003346152778091599 42-43 0.014591911030377021 44-45 9.371438919268752E-4 46-47 0.0018095724455011745 48-49 6.86669046878426E-5 50-51 0.0011189130308392177 52-53 4.54567292589814E-4 54-55 3.584463724461676E-4 56-57 1.3211250806877145E-4 58-59 0.009261695505687811 60-61 0.00694190341506108 62-63 5.157813260667559E-4 64-65 0.011178911847880843 66-67 0.0012144095606629734 68-69 0.005097790251440318 70-71 0.005129518709909259 72-73 0.02469547634249633 74-75 5.074423337918767E-4 76-77 0.00616560876051108 78-79 6.445359933820763E-5 80-81 6.096145533456496E-5 82-83 0.0 84-85 0.0 86-87 0.012698229763481766 88-89 2.1596796358798513E-4 90-91 9.802113989250347E-5 92-93 2.848649134972082E-5 94-95 1.789534233088575E-4 96-97 4.1128133808946343E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 9591.0 20-21 17596.0 22-23 19653.0 24-25 21437.0 26-27 26233.0 28-29 39435.0 30-31 60836.0 32-33 68431.0 34-35 85211.0 36-37 113213.0 38-39 139857.0 40-41 138421.0 42-43 153857.0 44-45 181477.0 46-47 177908.0 48-49 164911.0 50-51 148185.0 52-53 137834.0 54-55 142630.0 56-57 148570.0 58-59 153114.0 60-61 150404.0 62-63 139339.0 64-65 139268.0 66-67 146914.0 68-69 152818.0 70-71 154205.0 72-73 141873.0 74-75 138380.0 76-77 144677.0 78-79 151674.0 80-81 156695.0 82-83 146542.0 84-85 144668.0 86-87 152162.0 88-89 165692.0 90-91 178929.0 92-93 188384.0 94-95 217100.0 96-97 489497.0 98-99 870237.0 100-101 8812220.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.40248232413653 #Duplication Level Percentage of deduplicated Percentage of total 1 90.58812048680073 77.36450358650748 2 6.542398279401404 11.174741068280793 3 1.5853152843722134 4.061695816553442 4 0.589132201887492 2.0125340983310465 5 0.25144542668255787 1.073703180387106 6 0.14477614351320275 0.741854522240577 7 0.07906409911079773 0.4726589228748578 8 0.05202561964022292 0.355449364938111 9 0.035547934551548054 0.2732293666978331 >10 0.12474472813031756 1.6815312680712722 >50 0.004698946881912845 0.2712972404874342 >100 0.0025676159217062526 0.40122500138231904 >500 1.3356689190753475E-4 0.07106176793398933 >1k 2.9666213992546614E-5 0.04451479531379969 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3218702507680396E-5 2 0.0 6.609351253840198E-6 0.0 0.0 1.3218702507680396E-5 3 0.0 6.609351253840198E-6 0.0 6.609351253840198E-6 1.3218702507680396E-5 4 0.0 6.609351253840198E-5 0.0 6.609351253840198E-6 1.3218702507680396E-5 5 6.609351253840198E-6 6.609351253840198E-5 0.0 6.609351253840198E-6 1.3218702507680396E-5 6 1.3218702507680396E-5 6.609351253840198E-5 0.0 6.609351253840198E-6 1.3218702507680396E-5 7 1.3218702507680396E-5 6.609351253840198E-5 0.0 1.3218702507680396E-5 1.9828053761520596E-5 8 1.3218702507680396E-5 7.931221504608238E-5 0.0 1.9828053761520596E-5 1.9828053761520596E-5 9 1.3218702507680396E-5 1.5862443009216477E-4 0.0 3.304675626920099E-5 1.9828053761520596E-5 10-11 1.3218702507680396E-5 1.5862443009216477E-4 0.0 3.304675626920099E-5 1.9828053761520596E-5 12-13 1.3218702507680396E-5 1.5862443009216477E-4 0.0 3.9656107523041185E-5 1.9828053761520596E-5 14-15 1.3218702507680396E-5 2.2471794263056674E-4 0.0 5.9484161284561785E-5 2.6437405015360792E-5 16-17 3.965610752304119E-5 2.445459963920873E-4 0.0 6.278883691148188E-5 2.6437405015360792E-5 18-19 4.6265458776881385E-5 2.742880770343682E-4 0.0 8.592156629992257E-5 3.635143189612109E-5 20-21 4.6265458776881385E-5 3.073348333035692E-4 0.0 1.2227299819604366E-4 3.965610752304119E-5 22-23 5.9484161284561785E-5 3.866470483496516E-4 0.0 1.5201507883832457E-4 3.965610752304119E-5 24-25 6.939818816532208E-5 4.196938046188526E-4 0.0 1.8836651073444565E-4 3.965610752304119E-5 26-27 7.270286379224218E-5 4.296078314996129E-4 0.0 2.7759275266128834E-4 3.965610752304119E-5 28-29 7.600753941916228E-5 4.3291250712653296E-4 0.0 7.369426648031821E-4 3.965610752304119E-5 30-31 8.261689067300248E-5 4.758732902764943E-4 0.0 0.0020885549962135026 3.965610752304119E-5 32-33 8.922624192684268E-5 4.8248264153033445E-4 0.0 0.0045736710676574175 3.965610752304119E-5 34-35 9.253091755376277E-5 5.551855053225767E-4 0.0 0.007237239622955017 3.965610752304119E-5 36-37 9.253091755376277E-5 6.34497720368659E-4 0.0 0.011530013262324227 3.965610752304119E-5 38-39 9.253091755376277E-5 6.642398010109399E-4 0.0 0.0186780266433524 4.6265458776881385E-5 40-41 9.253091755376277E-5 7.00591232907061E-4 0.0 0.02657289671606452 4.6265458776881385E-5 42-43 9.253091755376277E-5 7.270286379224218E-4 0.0 0.03331443499498152 4.6265458776881385E-5 44-45 9.583559318068287E-5 8.228642311031047E-4 0.0 0.040531846564175016 5.2874810030721585E-5 46-47 9.914026880760297E-5 8.922624192684267E-4 0.0 0.04855229431071009 5.6179485657641685E-5 48-49 9.914026880760297E-5 9.054811217761071E-4 0.0 0.056536390625349056 5.9484161284561785E-5 50-51 1.1896832256912357E-4 0.001067410227495192 0.0 0.06472868150448399 6.609351253840198E-5 52-53 1.3218702507680397E-4 0.0010839336056297924 0.0 0.07217411569193496 6.609351253840198E-5 54-55 1.3218702507680397E-4 0.0010839336056297924 0.0 0.07948075350305531 6.609351253840198E-5 56-57 1.3218702507680397E-4 0.001097152308137473 0.0 0.08592817565117641 6.609351253840198E-5 58-59 1.3218702507680397E-4 0.001097152308137473 0.0 0.09185345905024415 6.609351253840198E-5 60-61 1.3879637633064417E-4 0.001107066335018233 0.0 0.0981918269026769 6.609351253840198E-5 62-63 1.5862443009216477E-4 0.0011136756862720734 0.0 0.104226164597433 6.609351253840198E-5 64-65 1.5862443009216477E-4 0.0011896832256912356 0.0 0.10956321573490896 6.609351253840198E-5 66-67 1.5862443009216477E-4 0.0012095112794527564 0.0 0.11489365752113109 6.609351253840198E-5 68-69 1.5862443009216477E-4 0.0012590814138565578 0.0 0.12062726973383746 6.609351253840198E-5 70-71 1.7184313259984517E-4 0.0012888234944988387 0.0 0.12583874319749044 6.609351253840198E-5 72-73 1.8506183510752554E-4 0.0012987375213795991 0.0 0.13001254851429056 7.270286379224218E-5 74-75 1.8506183510752554E-4 0.00133508895327572 0.0 0.13320156049426843 7.270286379224218E-5 76-77 1.8506183510752554E-4 0.0013813544120526015 0.0 0.13618568258537728 7.270286379224218E-5 78-79 1.8506183510752554E-4 0.0013879637633064416 0.0 0.13807595704397557 7.270286379224218E-5 80-81 1.8506183510752554E-4 0.0013879637633064416 0.0 0.13879968100627108 7.600753941916228E-5 82-83 1.8506183510752554E-4 0.0013912684389333616 0.0 0.13918963273024765 7.931221504608238E-5 84-85 1.8506183510752554E-4 0.001394573114560282 0.0 0.13929207767468216 7.931221504608238E-5 86-87 1.8506183510752554E-4 0.0014210105195756428 0.0 0.13933503845783213 8.592156629992257E-5 88 1.8506183510752554E-4 0.0015003227346217251 0.0 0.13933834313345905 9.253091755376277E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21910 0.0 51.559353 1 GTATCAA 39825 0.0 35.302788 1 ATCAACG 51600 0.0 26.749685 3 TCAACGC 51715 0.0 26.715662 4 CAACGCA 52515 0.0 26.279713 5 TATCAAC 53350 0.0 26.09257 2 AACGCAG 53965 0.0 25.608814 6 ACGCAGA 62485 0.0 22.04361 7 CGCAGAG 62865 0.0 21.882206 8 GTACATG 55225 0.0 20.930714 1 TACATGG 54295 0.0 20.693443 2 ACATGGG 55100 0.0 19.894592 3 GCAGAGT 71685 0.0 18.858505 9 GTGGTAT 9430 0.0 18.169176 1 GAGTACT 40080 0.0 18.133923 12-13 AGAGTAC 66475 0.0 17.741913 10-11 CAGAGTA 70510 0.0 17.292881 10-11 TGGTATC 9050 0.0 16.894442 2 CATGGGG 32395 0.0 16.831633 4 AGTACTT 43770 0.0 16.324503 12-13 >>END_MODULE