##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139853_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10510324 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.810243433028326 31.0 31.0 34.0 30.0 34.0 2 31.971059503018175 31.0 31.0 34.0 30.0 34.0 3 31.992753696270448 31.0 31.0 34.0 30.0 34.0 4 35.7153220014911 37.0 35.0 37.0 33.0 37.0 5 35.5267808109436 37.0 35.0 37.0 33.0 37.0 6 35.533460528904726 37.0 35.0 37.0 33.0 37.0 7 35.42693916952513 37.0 35.0 37.0 33.0 37.0 8 35.40686281412447 37.0 35.0 37.0 33.0 37.0 9 36.93782189778355 39.0 37.0 39.0 33.0 39.0 10-11 36.82884457225106 39.0 37.0 39.0 32.5 39.0 12-13 36.77049094775765 39.0 37.0 39.0 32.0 39.0 14-15 37.87304130681414 40.0 37.0 41.0 33.0 41.0 16-17 37.85822896610989 40.0 37.0 41.0 32.5 41.0 18-19 37.902101733495556 40.0 37.0 41.0 33.0 41.0 20-21 37.88491752080408 40.0 37.0 41.0 32.0 41.0 22-23 37.818099964716936 40.0 37.0 41.0 32.0 41.0 24-25 37.72808135119689 39.5 37.0 41.0 32.0 41.0 26-27 37.53343231160792 39.0 36.0 41.0 32.0 41.0 28-29 37.425065649355965 39.0 36.0 41.0 32.0 41.0 30-31 37.27446949047348 39.0 36.0 40.5 31.0 41.0 32-33 37.43302872816481 39.0 36.0 41.0 32.0 41.0 34-35 37.386913013784515 39.0 36.0 41.0 31.5 41.0 36-37 37.297719383471886 39.0 36.0 41.0 31.0 41.0 38-39 37.19056840326316 39.0 36.0 41.0 31.0 41.0 40-41 37.098835069319804 39.0 36.0 40.5 31.0 41.0 42-43 37.05747635655979 39.0 35.5 40.0 31.0 41.0 44-45 37.08152309006311 39.0 35.5 40.0 31.0 41.0 46-47 37.191991337181314 39.0 36.0 41.0 31.0 41.0 48-49 37.138790916884076 39.0 36.0 41.0 31.0 41.0 50-51 37.03415475922702 39.0 35.0 41.0 31.0 41.0 52-53 36.93966018301725 39.0 35.0 40.0 31.0 41.0 54-55 36.82131974242577 39.0 35.0 40.0 30.0 41.0 56-57 36.698993303736124 39.0 35.0 40.0 30.0 41.0 58-59 36.56050853894256 38.0 35.0 40.0 30.0 41.0 60-61 36.350126187267016 38.0 35.0 40.0 30.0 41.0 62-63 36.15023571128714 38.0 34.0 40.0 29.0 41.0 64-65 35.95748795964059 38.0 34.0 40.0 29.0 41.0 66-67 35.71773723069379 37.0 34.0 40.0 29.0 41.0 68-69 35.45310280937596 37.0 34.0 39.5 29.0 41.0 70-71 35.168323997880755 36.0 34.0 39.0 29.0 40.5 72-73 34.877640480065764 36.0 33.0 39.0 28.0 40.0 74-75 34.52920253487045 35.5 33.0 38.5 28.0 40.0 76-77 33.47571725927661 34.5 31.5 37.0 26.5 39.0 78-79 33.89571957271462 35.0 32.5 37.0 28.0 39.0 80-81 33.79009292416949 35.0 33.0 37.0 28.0 39.0 82-83 33.54984768437048 35.0 32.5 36.0 28.0 38.5 84-85 33.311922039512666 35.0 32.0 36.0 28.0 37.0 86-87 33.09240528854751 35.0 32.0 35.5 28.0 37.0 88-89 32.8723435214836 34.0 32.0 35.0 27.0 36.5 90-91 32.73574426618447 34.0 32.0 35.0 27.0 36.0 92-93 32.65383443726101 34.0 32.0 35.0 27.0 36.0 94-95 32.61047728843121 34.0 32.0 35.0 27.0 36.0 96-97 32.61935506615221 34.0 32.0 35.0 27.5 35.0 98-99 32.73483598905824 34.0 32.0 35.0 29.0 35.0 100-101 32.07682086960109 33.5 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 22.0 20 97.0 21 643.0 22 2793.0 23 8979.0 24 22979.0 25 47399.0 26 83846.0 27 129602.0 28 184038.0 29 241635.0 30 305495.0 31 376262.0 32 461364.0 33 573445.0 34 732753.0 35 955529.0 36 1325122.0 37 1907950.0 38 2105304.0 39 1010865.0 40 34200.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.43765653656348 22.978397240655948 15.686576360538456 23.897369862242115 2 13.461219714513037 23.505071693342146 41.4949159373703 21.538792654774515 3 16.22809154123127 28.897168155805662 32.33474058459092 22.539999718372144 4 11.615750380292749 20.14464064095455 40.58147018112857 27.658138797624126 5 11.81807862956802 39.204026213852075 36.80886625632081 12.169028900259088 6 27.152892717674547 40.797648102950966 19.70267519821463 12.346783981159858 7 23.843508535036598 33.97711621449538 25.494570861944883 16.684804388523133 8 23.108383718713142 37.89294221567289 22.456615038699095 16.54205902691487 9 25.037439378652838 16.63027704949914 22.41982264295563 35.91246092889239 10-11 22.91251440012696 27.74315996347972 30.469698174861215 18.87462746153211 12-13 23.87153811813984 25.56958282161425 30.329340941344913 20.229538118900997 14-15 21.134824197617505 26.83131842557851 27.972163370035023 24.061694006768963 16-17 20.467661130142133 29.772207783508865 28.644730647694587 21.115400438654415 18-19 20.493319474532026 29.01306182032967 30.396173235396915 20.097445469741388 20-21 21.410179856801356 28.191827019439675 30.13014256922425 20.26785055453472 22-23 21.14006444292669 28.07789963907279 29.99055120028496 20.791484717715562 24-25 20.86999528694921 28.342403568324908 30.00637418462841 20.78122696009747 26-27 20.82695466362389 28.46427127438939 29.874009268338447 20.83476479364827 28-29 20.79662602845577 28.491236373187395 29.927719806391284 20.784417791965552 30-31 21.10026074001385 28.373810273197574 29.751403616772343 20.77452537001623 32-33 20.88080331689544 28.582943081957456 29.691970778819165 20.844282822327937 34-35 21.0293115626787 28.635141631976683 29.69519091532365 20.640355890020967 36-37 20.972378156715983 28.541329341109577 29.694321244716264 20.791971257458176 38-39 20.82212065019176 28.656188787323355 29.68746011707629 20.834230445408593 40-41 21.029432398610886 28.494302684058365 29.61452229955242 20.86174261777833 42-43 20.930936014810523 28.657325490903148 29.313958932665447 21.097779561620886 44-45 21.036959805435185 28.76983744038222 29.11838394176531 21.07481881241729 46-47 21.095214452590763 28.690916770483998 28.943804618322822 21.27006415860242 48-49 20.994573566389345 28.878062967107958 28.898854589764838 21.228508876737852 50-51 21.046204195273095 28.962790146817817 28.69130138979742 21.299704268111668 52-53 21.16088067860905 28.834779501971568 28.59682499651921 21.407514822900165 54-55 21.120195584364332 28.77591640897664 28.665442194590224 21.4384458120688 56-57 21.130639429319125 28.84859210749027 28.609282526338113 21.411485936852497 58-59 21.108673728812636 28.881356642715666 28.618649330373287 21.391320298098407 60-61 21.240095829265265 28.838534988968593 28.62310771314312 21.29826146862302 62-63 21.154691436798352 28.91999262896146 28.591695430111898 21.33362050412829 64-65 21.099579935894052 28.903627670712684 28.545935883576778 21.45085650981649 66-67 21.213206088600096 29.021951525937318 28.337498596531862 21.427343788930724 68-69 21.18642413963455 28.970285483511283 28.405629350861446 21.437661025992725 70-71 21.18267928187159 28.788553711020327 28.4681640713276 21.560602935780484 72-73 21.21197787662745 28.759877304455838 28.47162926500478 21.556515553911925 74-75 21.164369565685824 28.807811975301856 28.43740761983667 21.590410839175654 76-77 21.284068173638836 28.785243748564703 28.346401352276708 21.58428672551975 78-79 21.275840704491188 28.78172642996968 28.312684232146278 21.629748633392857 80-81 21.29708254257407 28.787235495469698 28.31390324863705 21.601778713319177 82-83 21.314588141950143 28.705906163784345 28.45357466608037 21.525931028185145 84-85 21.424997669807944 28.68075265301972 28.37260240643975 21.521647270732583 86-87 21.223466630513023 28.752951271932435 28.463849129127013 21.559732968427532 88-89 21.319816373635014 28.664359528415282 28.469185424809005 21.54663867314069 90-91 21.39061903166249 28.60674103059413 28.56238033760456 21.440259600138823 92-93 21.430874950991075 28.529885893774477 28.55267313232328 21.486566022911173 94-95 21.242790393520664 28.54521447216617 28.674702643154138 21.53729249115903 96-97 21.121545554003035 28.559822012565704 28.845863576810103 21.47276885662116 98-99 21.214891514840136 29.215768881160336 28.873912184325967 20.695427419673557 100-101 24.678933521371064 36.26000656258192 29.924986552002757 9.136073364044261 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3776.0 1 3199.0 2 3886.0 3 5411.0 4 6967.5 5 10379.5 6 13392.5 7 16156.5 8 18120.5 9 18181.0 10 16874.0 11 15479.5 12 16879.0 13 22086.0 14 34319.0 15 50923.0 16 63908.5 17 70273.0 18 71396.5 19 69881.0 20 67832.5 21 67311.0 22 69977.5 23 78109.5 24 93162.5 25 115705.5 26 143458.5 27 171489.0 28 199708.5 29 228557.5 30 255700.5 31 282183.0 32 309502.5 33 335936.0 34 360307.5 35 382906.5 36 405925.0 37 424574.0 38 435057.0 39 441248.0 40 445090.5 41 444872.0 42 441068.0 43 439711.0 44 437919.5 45 433726.5 46 425536.5 47 413616.5 48 401405.5 49 384585.5 50 367584.0 51 349103.5 52 325495.0 53 302274.5 54 280861.5 55 259222.0 56 236721.5 57 212244.0 58 187363.0 59 162888.0 60 136737.5 61 110494.5 62 86270.0 63 66096.5 64 50018.0 65 38048.0 66 29021.5 67 22022.5 68 16783.5 69 12063.0 70 8316.0 71 6038.0 72 4308.0 73 2990.5 74 2020.5 75 1361.0 76 952.5 77 659.0 78 442.5 79 295.0 80 215.0 81 172.0 82 139.5 83 106.0 84 79.5 85 62.0 86 50.0 87 38.5 88 26.5 89 16.5 90 12.0 91 8.5 92 6.0 93 5.0 94 4.0 95 3.0 96 3.0 97 2.5 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004015099819948462 3 0.0 4 0.0 5 2.8543363648922716E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 3.3776313651225217E-4 20-21 7.183810982229631E-4 22-23 2.4266674190921725E-4 24-25 1.4279067040029366E-4 26-27 0.002633468392640899 28-29 4.765119402217677E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.033292347977747126 38-39 0.016978108954262452 40-41 0.021444835738747087 42-43 0.010878408154700682 44-45 0.004175746283059454 46-47 0.0051474500781102705 48-49 0.009302678899124063 50-51 0.006909048998258077 52-53 0.011342139715933773 54-55 0.003672432208334319 56-57 0.016794411506650803 58-59 0.01331278574711006 60-61 0.012994867961642271 62-63 0.005062881545151389 64-65 0.006640065105303322 66-67 4.395183381320745E-4 68-69 7.643889709094984E-4 70-71 0.0012930145535253073 72-73 8.947163421132842E-5 74-75 0.0036799392228985188 76-77 0.004687335378846356 78-79 0.003743860770310585 80-81 6.854046133822966E-4 82-83 0.0033321913904827832 84-85 0.004564931786782611 86-87 0.001457355732311562 88-89 0.07805367721741605 90-91 0.001085180023366152 92-93 1.422868267654327E-5 94-95 6.052175439878308E-4 96-97 0.012114348622528628 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 358.0 20-21 1255.0 22-23 2361.0 24-25 5304.0 26-27 6300.0 28-29 8278.0 30-31 29056.0 32-33 37126.0 34-35 52938.0 36-37 78487.0 38-39 86843.0 40-41 92879.0 42-43 105506.0 44-45 122163.0 46-47 124217.0 48-49 113135.0 50-51 103377.0 52-53 94115.0 54-55 101399.0 56-57 107909.0 58-59 112907.0 60-61 111064.0 62-63 107226.0 64-65 115717.0 66-67 124589.0 68-69 126787.0 70-71 126247.0 72-73 121557.0 74-75 122131.0 76-77 123063.0 78-79 132855.0 80-81 137330.0 82-83 131391.0 84-85 131159.0 86-87 139357.0 88-89 147178.0 90-91 158837.0 92-93 165351.0 94-95 199384.0 96-97 252374.0 98-99 820147.0 100-101 5630667.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.06816647235041 #Duplication Level Percentage of deduplicated Percentage of total 1 90.82381523804968 78.17039249562457 2 6.47160234114151 11.139978952804402 3 1.4685430489311282 3.791844228216522 4 0.5357124486056855 1.8443115283161842 5 0.2531205499627728 1.089281081588441 6 0.14299455420329457 0.7384367457485216 7 0.08240934678489596 0.4964974964572058 8 0.05301852992821474 0.3650566127984703 9 0.03425648482541584 0.2653553554840293 >10 0.1305596693325545 1.7786582478643904 >50 0.003188365178822795 0.18782432131512505 >100 7.24853387258937E-4 0.10022231660194111 >500 5.456966874204049E-5 0.032140617180200205 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.514454549640905E-6 1.902890909928181E-5 2 0.0 1.902890909928181E-5 0.0 1.902890909928181E-5 2.8543363648922716E-5 3 0.0 1.902890909928181E-5 0.0 1.902890909928181E-5 3.805781819856362E-5 4 0.0 8.563009094676815E-5 0.0 1.902890909928181E-5 3.805781819856362E-5 5 0.0 9.514454549640905E-5 0.0 2.8543363648922716E-5 3.805781819856362E-5 6 0.0 9.514454549640905E-5 0.0 2.8543363648922716E-5 4.7572272748204526E-5 7 0.0 9.514454549640905E-5 0.0 2.8543363648922716E-5 4.7572272748204526E-5 8 0.0 1.0465900004604996E-4 0.0 2.8543363648922716E-5 4.7572272748204526E-5 9 0.0 1.5223127279425448E-4 0.0 9.514454549640905E-5 5.708672729784543E-5 10-11 1.4271681824461358E-5 1.5223127279425448E-4 0.0 1.1417345459569086E-4 5.708672729784543E-5 12-13 1.902890909928181E-5 1.5223127279425448E-4 0.0 1.1417345459569086E-4 5.708672729784543E-5 14-15 1.902890909928181E-5 1.9504631826763858E-4 0.0 1.6174572734389538E-4 8.087286367194769E-5 16-17 2.3786136374102263E-5 1.9980354554245902E-4 0.0 2.235896819165613E-4 9.514454549640905E-5 18-19 2.8543363648922716E-5 2.1407522736692036E-4 0.0 3.234914546877908E-4 1.1417345459569086E-4 20-21 2.8543363648922716E-5 2.52133045565484E-4 0.0 4.3766490928348167E-4 1.2368790914533178E-4 22-23 2.8543363648922716E-5 2.7591918193958624E-4 0.0 7.04069636673427E-4 1.2368790914533178E-4 24-25 4.7572272748204526E-5 3.2349145468779075E-4 0.0 0.0015270699552173653 1.2368790914533178E-4 26-27 4.7572272748204526E-5 3.425203637870726E-4 0.0 0.0037011228198103123 1.2368790914533178E-4 28-29 4.7572272748204526E-5 3.425203637870726E-4 0.0 0.019485602917664574 1.2368790914533178E-4 30-31 5.708672729784543E-5 3.853354092604567E-4 0.0 0.053637737523600605 1.2368790914533178E-4 32-33 5.708672729784543E-5 3.900926365352771E-4 0.0 0.07021191734907506 1.2368790914533178E-4 34-35 5.708672729784543E-5 4.471793638331225E-4 0.0 0.09222836517694412 1.2368790914533178E-4 36-37 5.708672729784543E-5 5.04266091130968E-4 0.0 0.11995824296187253 1.3320236369497267E-4 38-39 6.660118184748634E-5 5.185377729554294E-4 0.0 0.16577509884566832 1.3320236369497267E-4 40-41 6.660118184748634E-5 6.089250911770179E-4 0.0 0.23804689560474063 1.3320236369497267E-4 42-43 6.660118184748634E-5 6.184395457266589E-4 0.0 0.2752721990302107 1.3795959096979312E-4 44-45 8.563009094676815E-5 6.707690457496839E-4 0.0 0.3248472644611146 1.427168182446136E-4 46-47 8.563009094676815E-5 7.135840912230679E-4 0.0 0.37937936071238143 1.427168182446136E-4 48-49 8.563009094676815E-5 7.183413184978884E-4 0.0 0.42151412268546623 1.617457273438954E-4 50-51 8.563009094676815E-5 7.801852730705543E-4 0.0 0.46056144415719247 1.617457273438954E-4 52-53 1.0465900004604997E-4 7.896997276201952E-4 0.0 0.5074296472687236 1.8553186371799766E-4 54-55 1.2368790914533178E-4 7.896997276201952E-4 0.0 0.5916991712148931 2.0931800009209992E-4 56-57 1.2844513642015223E-4 8.087286367194769E-4 0.0 0.6750743364333964 2.0931800009209992E-4 58-59 1.427168182446136E-4 8.087286367194769E-4 0.0 0.7427078365995188 2.0931800009209992E-4 60-61 1.5223127279425448E-4 8.230003185439384E-4 0.0 0.7851327894363676 2.1407522736692036E-4 62-63 1.5223127279425448E-4 8.277575458187588E-4 0.0 0.820597918770154 2.2834690919138173E-4 64-65 1.5223127279425448E-4 9.514454549640906E-4 0.0 0.8365108440044284 2.2834690919138173E-4 66-67 1.5698850006907496E-4 9.514454549640906E-4 0.0 0.8455210324629383 2.331041364662022E-4 68-69 1.617457273438954E-4 9.657171367885519E-4 0.0 0.8537938506938512 2.426185910158431E-4 70-71 1.6650295461871585E-4 9.704743640633724E-4 0.0 0.8616147323336559 2.5689027284030446E-4 72-73 1.807746364431772E-4 9.752315913381928E-4 0.0 0.8682748505184046 2.5689027284030446E-4 74-75 1.807746364431772E-4 0.0010180466368115769 0.0 0.874278471339228 2.5689027284030446E-4 76-77 1.902890909928181E-4 0.0010894050459338838 0.0 0.8795685080688284 2.5689027284030446E-4 78-79 1.902890909928181E-4 0.0011227056368576268 0.0 0.8842353480254272 2.5689027284030446E-4 80-81 1.902890909928181E-4 0.0011227056368576268 0.0 0.8866187188901122 2.5689027284030446E-4 82-83 1.902890909928181E-4 0.0011227056368576268 0.0 0.8881505460726045 2.6640472738994535E-4 84-85 1.9504631826763858E-4 0.0011227056368576268 0.0 0.8894968413913786 2.6640472738994535E-4 86-87 1.9980354554245902E-4 0.0011369773186820883 0.0 0.8900058647097844 2.6640472738994535E-4 88-89 1.9980354554245902E-4 0.0011797923641554723 0.0 0.8900772231189067 2.6640472738994535E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12595 0.0 50.036423 1 GTATCAA 23830 0.0 36.458225 1 TCAACGC 30265 0.0 28.188837 4 ATCAACG 30420 0.0 28.126339 3 CAACGCA 30930 0.0 27.556175 5 TATCAAC 31925 0.0 27.03337 2 AACGCAG 31775 0.0 26.84926 6 ACGCAGA 36950 0.0 23.05551 7 CGCAGAG 37040 0.0 22.988386 8 GTACATG 32650 0.0 19.957108 1 TACATGG 32390 0.0 19.621996 2 GCAGAGT 43310 0.0 19.470394 9 ACATGGG 32605 0.0 18.961988 3 AGAGTAC 40125 0.0 18.17106 10-11 GAGTACT 25265 0.0 17.860659 12-13 CATGGGG 22440 0.0 17.15782 4 CAGAGTA 42810 0.0 17.002565 10-11 AGTACTT 28190 0.0 16.014729 12-13 TATACCG 810 0.0 15.742937 5 GTACTTT 29125 0.0 15.537025 14-15 >>END_MODULE