##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139850_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 30176738 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.770283620449632 31.0 30.0 33.0 28.0 34.0 2 31.232746826379977 31.0 31.0 34.0 28.0 34.0 3 31.392778802003054 31.0 31.0 34.0 28.0 34.0 4 35.07952426799742 37.0 35.0 37.0 32.0 37.0 5 35.13782394240226 37.0 35.0 37.0 33.0 37.0 6 35.00101999096125 37.0 35.0 37.0 32.0 37.0 7 35.01786813405743 37.0 35.0 37.0 32.0 37.0 8 35.1180645833887 37.0 35.0 37.0 32.0 37.0 9 36.822750855311135 39.0 37.0 39.0 32.0 39.0 10-11 36.804057632074084 39.0 37.0 39.0 32.0 39.0 12-13 36.71842388995126 39.0 37.0 39.0 32.0 39.0 14-15 37.876232513931754 40.0 37.0 41.0 32.0 41.0 16-17 37.91850048537387 40.0 37.0 41.0 32.5 41.0 18-19 37.97680115392194 40.0 37.0 41.0 32.5 41.0 20-21 37.9898093137207 40.0 37.0 41.0 32.5 41.0 22-23 37.9384191248315 40.0 37.0 41.0 32.0 41.0 24-25 37.96441100064338 40.0 37.0 41.0 32.0 41.0 26-27 37.84784979047019 40.0 37.0 41.0 32.0 41.0 28-29 37.805337186284746 40.0 37.0 41.0 32.0 41.0 30-31 37.728653874836844 40.0 37.0 41.0 32.0 41.0 32-33 37.636148064746216 40.0 37.0 41.0 32.0 41.0 34-35 37.55447396028519 40.0 37.0 41.0 32.0 41.0 36-37 37.45879208587429 40.0 36.0 41.0 31.0 41.0 38-39 37.43481750642352 40.0 36.0 41.0 31.0 41.0 40-41 37.3624162379282 40.0 36.0 41.0 31.0 41.0 42-43 37.31543295399527 39.0 36.0 41.0 31.0 41.0 44-45 37.252278126480995 39.0 36.0 41.0 31.0 41.0 46-47 37.12532513290005 39.0 36.0 41.0 30.5 41.0 48-49 37.05719782381267 39.0 36.0 41.0 30.0 41.0 50-51 36.9890832075499 39.0 35.5 41.0 30.0 41.0 52-53 36.9085030039095 39.0 35.0 41.0 30.0 41.0 54-55 36.773673633112196 39.0 35.0 40.5 30.0 41.0 56-57 36.63168986963166 39.0 35.0 40.0 30.0 41.0 58-59 36.46330852168662 38.0 35.0 40.0 30.0 41.0 60-61 36.30646403166345 38.0 35.0 40.0 29.0 41.0 62-63 36.13523712447029 38.0 34.0 40.0 29.0 41.0 64-65 35.96605999085915 38.0 34.0 40.0 29.0 41.0 66-67 35.71939652625982 37.0 34.0 40.0 29.0 41.0 68-69 35.4283458655146 37.0 34.0 39.5 29.0 41.0 70-71 35.14652041278949 36.0 34.0 39.0 28.0 41.0 72-73 34.87893252139308 36.0 33.5 39.0 28.0 40.0 74-75 34.5744275558733 35.5 33.0 38.5 28.0 40.0 76-77 34.27038072565391 35.0 33.0 37.5 28.0 39.5 78-79 34.22628219707401 35.0 33.0 37.0 29.0 39.0 80-81 33.97040419434432 35.0 33.0 37.0 29.0 39.0 82-83 33.75868964778178 35.0 33.0 36.0 29.0 38.5 84-85 33.533795013911856 35.0 33.0 36.0 29.0 37.0 86-87 33.31845451105371 35.0 33.0 35.5 29.0 37.0 88-89 33.16308349187145 35.0 32.5 35.0 29.0 36.5 90-91 33.047670488066196 35.0 32.0 35.0 29.0 36.0 92-93 32.98692554082903 35.0 32.0 35.0 29.0 36.0 94-95 32.948271277877275 34.5 32.0 35.0 29.0 36.0 96-97 32.99619380266585 34.0 32.0 35.0 29.0 35.5 98-99 33.1124743663367 34.0 32.0 35.0 29.0 35.0 100 32.67044412282482 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 3.0 16 8.0 17 356.0 18 3257.0 19 11479.0 20 24277.0 21 41899.0 22 67035.0 23 103241.0 24 157017.0 25 226756.0 26 312355.0 27 410161.0 28 517545.0 29 639205.0 30 775913.0 31 946860.0 32 1165987.0 33 1469858.0 34 1919841.0 35 2558929.0 36 3621389.0 37 5435950.0 38 6447599.0 39 3205202.0 40 114615.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.21663845840462 19.48578073614186 9.793228810880752 29.504351994572776 2 13.847139475446285 23.389479671394568 37.44341750920858 25.319963343950562 3 17.20873210351629 27.99902030497796 29.287598944591032 25.504648646914717 4 11.737070454732383 20.164800449935974 38.4402383054126 29.657890789919044 5 12.658222597150385 39.44654696251773 34.7299986260992 13.165231814232683 6 27.57862168797357 40.65345744539829 18.783793009284544 12.98412785734359 7 25.07942707392694 34.9844671746827 22.94281774259365 16.993288008796707 8 24.546145444878768 37.35153879123715 20.802278231663077 17.300037532221012 9 26.094271687019322 17.138051833170305 21.052974645569712 35.714701834240664 10-11 23.31389164726817 27.997713006621193 28.904338500735232 19.7840568453754 12-13 24.522108718311436 25.83193219890102 29.10618602978228 20.539773053005263 14-15 21.858964676698985 26.6688931056763 27.22800754674014 24.244134670884574 16-17 20.772279959484024 29.662747179632206 27.93928555167228 21.625687309211486 18-19 20.75903300084986 28.770409180740476 29.91096320616231 20.559594612247352 20-21 21.947084944534513 27.77871090258401 29.73116640260054 20.54303775028094 22-23 21.534107176125843 27.708613308115815 29.63487409435227 21.122405421406075 24-25 21.092683340211536 27.855213835536507 29.840222561579406 21.21188026267255 26-27 21.05985276725716 28.03261076743892 29.692863345168714 21.21467312013521 28-29 21.047145884492355 28.013690384682782 29.793209744131367 21.145953986693495 30-31 21.39085745120333 27.861552037555576 29.68687938639204 21.060711124849053 32-33 21.15619491986765 27.99643026150271 29.655359786053786 21.192015032575853 34-35 21.283200554019068 28.039861427451072 29.712931624210825 20.96400639431904 36-37 21.255352687113625 27.916605170592707 29.68916042033729 21.13888172195638 38-39 21.09973773905027 28.07262386369287 29.68631363748453 21.14132475977233 40-41 21.364695295921184 27.956797777572323 29.537271165781544 21.141235760724953 42-43 21.238154512731988 28.02915116350142 29.341867162443624 21.390827161322964 44-45 21.280687550600984 28.257240921873166 29.13906620252762 21.323005324998228 46-47 21.378005829903646 28.235884658906134 28.81634866260639 21.56976084858383 48-49 21.3538439919465 28.378988684655027 28.711077783377114 21.55608954002136 50-51 21.37049347762956 28.497235780836842 28.553919131417516 21.57835161011608 52-53 21.50068896550247 28.405936228976614 28.472679280324787 21.620695525196126 54-55 21.420089204929727 28.317423833317807 28.627813598473324 21.634673363279145 56-57 21.4217016534509 28.39563238911873 28.5603766157559 21.622289341674474 58-59 21.417772971091868 28.445493303713754 28.52202861536876 21.614705109825614 60-61 21.548999743169546 28.42570896733244 28.50451865840668 21.520772631091337 62-63 21.43793121822728 28.479923304709875 28.53273687005463 21.54940860700821 64-65 21.368179397183475 28.415438491047734 28.52592753290466 21.69045457886413 66-67 21.462911891402754 28.56224325779365 28.30481475587287 21.670030094930723 68-69 21.440240092240142 28.500074224941287 28.364357548506568 21.695328134312 70-71 21.438796920466963 28.265406409435094 28.441350044588283 21.854446625509663 72-73 21.45244966300053 28.323144559366 28.41117594976185 21.81322982787162 74-75 21.37116641194515 28.434374078024998 28.37520228107519 21.819257228954655 76-77 21.475929765536083 28.36223099463961 28.31769728350476 21.844141956319547 78-79 21.464838209378776 28.423725571352726 28.314304451234516 21.797131768033985 80-81 21.451522046567415 28.468537041381225 28.243006111063167 21.836934800988196 82-83 21.51314128517522 28.416867133150557 28.34049003606286 21.729501545611367 84-85 21.563924730236405 28.448694202186957 28.280522948042385 21.706858119534253 86-87 21.352403355215802 28.563740468117267 28.38038562942991 21.703470547237018 88-89 21.438023231424296 28.48195344508268 28.339810024224683 21.740213299268344 90-91 21.483387282659585 28.401192543923067 28.43806037536029 21.677359798057058 92-93 21.46939605660856 28.452922259411118 28.413488073746944 21.664193610233376 94-95 21.270610516934045 28.54607465638397 28.500238468790972 21.683076357891014 96-97 21.307372579597754 28.668004772827675 28.601442347108197 21.42318030046637 98-99 22.242443678262845 30.640734304042 28.84802246421751 18.268799553477642 100 21.457072629464115 31.55595057655367 22.628942921420247 24.35803387256197 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 45274.0 1 38367.0 2 22525.0 3 12957.5 4 12643.0 5 15472.0 6 20688.0 7 29318.5 8 41670.0 9 49492.0 10 47094.5 11 42593.0 12 46172.5 13 60673.0 14 95419.5 15 143205.5 16 182404.5 17 205931.0 18 212629.0 19 204076.5 20 185911.0 21 166532.0 22 156782.0 23 166509.0 24 196464.0 25 242399.0 26 304452.5 27 375768.5 28 443910.5 29 515704.5 30 590704.0 31 665013.5 32 746338.0 33 826382.5 34 905424.0 35 977414.0 36 1047156.0 37 1111961.5 38 1157589.5 39 1191338.5 40 1218067.0 41 1235861.5 42 1248370.5 43 1262316.0 44 1270493.0 45 1276429.0 46 1271714.5 47 1256876.5 48 1238782.0 49 1205207.5 50 1164633.5 51 1112462.0 52 1042241.5 53 964860.0 54 886284.5 55 809530.0 56 735775.0 57 660107.5 58 585246.0 59 514324.5 60 437225.5 61 352438.0 62 271290.5 63 207524.0 64 160088.0 65 122208.0 66 91579.0 67 69728.5 68 53270.5 69 39352.5 70 28938.0 71 21504.0 72 16112.0 73 11807.5 74 8383.5 75 5946.5 76 4176.0 77 2892.0 78 2093.5 79 1570.0 80 1134.0 81 796.5 82 588.5 83 412.5 84 290.0 85 214.5 86 165.5 87 145.5 88 108.0 89 79.0 90 64.5 91 51.0 92 45.0 93 39.5 94 34.5 95 46.0 96 49.0 97 30.0 98 18.5 99 24.5 100 41.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.14434297040322913 6 0.006157060448349322 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.315157595050085E-6 22-23 4.943329455473847E-4 24-25 4.4828773510989875E-4 26-27 0.003240900739055005 28-29 6.889477471408668E-4 30-31 5.00221681575218E-6 32-33 3.344079868398418E-6 34-35 1.6777881088512684E-6 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.002579147091912117 48-49 0.0 50-51 2.517421274482641E-5 52-53 0.0 54-55 7.312148661539522E-6 56-57 1.751516324556196E-4 58-59 9.116875779888253E-5 60-61 1.9916580716913105E-4 62-63 0.0 64-65 8.098647732602641E-4 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 3.025546321386479E-4 76-77 3.668343887838021E-5 78-79 3.4409038871273086E-4 80-81 0.0 82-83 0.0 84-85 8.545069473551087E-6 86-87 0.0 88-89 6.288328953486655E-4 90-91 0.0 92-93 1.0849701124639333E-4 94-95 0.0 96-97 2.3592820383894826E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 7800.0 20-21 20241.0 22-23 27584.0 24-25 29237.0 26-27 34192.0 28-29 51018.0 30-31 81193.0 32-33 95549.0 34-35 128414.0 36-37 184524.0 38-39 232589.0 40-41 239061.0 42-43 266289.0 44-45 317684.0 46-47 309023.0 48-49 281661.0 50-51 245161.0 52-53 218071.0 54-55 227645.0 56-57 244016.0 58-59 257468.0 60-61 259212.0 62-63 242783.0 64-65 247645.0 66-67 266165.0 68-69 275486.0 70-71 277217.0 72-73 258499.0 74-75 252561.0 76-77 262630.0 78-79 281699.0 80-81 296132.0 82-83 283749.0 84-85 279797.0 86-87 295312.0 88-89 326215.0 90-91 358933.0 92-93 385163.0 94-95 459862.0 96-97 1045450.0 98-99 1904534.0 100-101 1.8419274E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.89744309032639 #Duplication Level Percentage of deduplicated Percentage of total 1 88.15772115575442 72.19891951326261 2 8.008326482158811 13.117229246427097 3 2.004818681736388 4.9256857168178705 4 0.7702104687952145 2.5231307214291876 5 0.392269959930913 1.6062953359743282 6 0.2084204560958901 1.0241461465183819 7 0.12968863942281914 0.7434817576614534 8 0.07781369433056089 0.509819408246813 9 0.05166368246324692 0.38080111449334125 >10 0.19346313473064816 2.432414676646523 >50 0.004000368321083409 0.22091186193403772 >100 0.0014993770008700585 0.1934147458094703 >500 4.8315210527476075E-5 0.028292128595695173 >1k 5.558404866108204E-5 0.0954576261831517 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.627621580569775E-6 0.0 2 0.0 1.9882864741709327E-5 0.0 6.627621580569775E-6 0.0 3 0.0 1.9882864741709327E-5 0.0 1.9882864741709327E-5 0.0 4 0.0 8.28452697571222E-5 0.0 3.3138107902848874E-5 0.0 5 0.0 8.947289133769197E-5 0.0 3.9765729483418654E-5 0.0 6 0.0 8.947289133769197E-5 0.0 4.639335106398843E-5 0.0 7 3.3138107902848876E-6 9.278670212797686E-5 0.0 4.639335106398843E-5 0.0 8 3.3138107902848876E-6 1.0272813449883152E-4 0.0 4.639335106398843E-5 0.0 9 3.3138107902848876E-6 1.7563197188509905E-4 0.0 6.959002659598263E-5 0.0 10-11 3.3138107902848876E-6 1.7894578267538394E-4 0.0 9.278670212797686E-5 0.0 12-13 3.3138107902848876E-6 1.8391649886081128E-4 0.0 1.1432647226482862E-4 0.0 14-15 3.3138107902848876E-6 2.3196675531994213E-4 0.0 1.2758171542596818E-4 0.0 16-17 4.970716185427332E-6 2.4356509308593924E-4 0.0 1.6237672872395948E-4 0.0 18-19 8.28452697571222E-6 2.684186740130759E-4 0.0 2.1705460676366015E-4 0.0 20-21 9.941432370854664E-6 2.9824297112563986E-4 0.0 2.8001701177907297E-4 0.0 22-23 1.1598337765997107E-5 3.2641036284306144E-4 0.0 3.578915653507679E-4 0.0 24-25 1.325524316113955E-5 3.6948990311676494E-4 0.0 4.70561132220454E-4 0.0 26-27 1.325524316113955E-5 3.860589570681894E-4 0.0 6.478500095006955E-4 0.0 28-29 1.325524316113955E-5 3.9102967325361674E-4 0.0 0.0017331230433189964 0.0 30-31 1.325524316113955E-5 4.2913849734189295E-4 0.0 0.004969059280032189 0.0 32-33 1.325524316113955E-5 4.307954027370354E-4 0.0 0.01065887240695134 0.0 34-35 1.325524316113955E-5 4.838163753815936E-4 0.0 0.0176410717420816 0.0 36-37 1.325524316113955E-5 5.33523537235867E-4 0.0 0.02940344314219781 3.3138107902848876E-6 38-39 1.325524316113955E-5 5.368373480261518E-4 0.0 0.05714832398385803 3.3138107902848876E-6 40-41 1.325524316113955E-5 5.799168882998553E-4 0.0 0.08716979283844398 3.3138107902848876E-6 42-43 1.325524316113955E-5 5.8985832067071E-4 0.0 0.10761434850910659 3.3138107902848876E-6 44-45 1.325524316113955E-5 6.49506914895838E-4 0.0 0.13205204618206248 3.3138107902848876E-6 46-47 1.325524316113955E-5 7.041847929355387E-4 0.0 0.15722209603967136 3.3138107902848876E-6 48-49 1.325524316113955E-5 7.157831307015357E-4 0.0 0.18112792708078654 3.3138107902848876E-6 50-51 1.325524316113955E-5 8.499924677080737E-4 0.0 0.20464438535404322 3.3138107902848876E-6 52-53 1.325524316113955E-5 8.615908054740708E-4 0.0 0.25178831456203116 4.970716185427332E-6 54-55 1.6569053951424437E-5 8.682184270546406E-4 0.0 0.30402391404929185 6.627621580569775E-6 56-57 1.6569053951424437E-5 8.781598594254953E-4 0.0 0.35676984039825643 8.28452697571222E-6 58-59 1.6569053951424437E-5 8.930720079817772E-4 0.0 0.3931240016730768 9.941432370854664E-6 60-61 1.6569053951424437E-5 9.079841565380592E-4 0.0 0.4104171232821785 9.941432370854664E-6 62-63 1.6569053951424437E-5 9.179255889089139E-4 0.0 0.42943508340762343 9.941432370854664E-6 64-65 1.6569053951424437E-5 9.378084536506232E-4 0.0 0.43778920040993163 9.941432370854664E-6 66-67 1.6569053951424437E-5 9.411222644409082E-4 0.0 0.44346575829368967 1.1598337765997107E-5 68-69 1.9882864741709327E-5 9.709465615534721E-4 0.0 0.4491091780695448 1.325524316113955E-5 70-71 1.9882864741709327E-5 9.77574183134042E-4 0.0 0.45384295678346676 1.6569053951424437E-5 72-73 1.9882864741709327E-5 9.808879939243267E-4 0.0 0.4578062744886475 2.3196675531994214E-5 74-75 1.9882864741709327E-5 0.0010024277640611787 0.0 0.460975934509555 2.3196675531994214E-5 76-77 1.9882864741709327E-5 0.0010620763582863063 0.0 0.46409257355781797 2.3196675531994214E-5 78-79 1.9882864741709327E-5 0.001090243750003728 0.0 0.46603115287013464 2.3196675531994214E-5 80-81 2.3196675531994214E-5 0.0010919006553988704 0.0 0.4667833879195293 2.65104863222791E-5 82-83 2.3196675531994214E-5 0.0010985282769794403 0.0 0.46749254342865026 2.9824297112563987E-5 84-85 2.3196675531994214E-5 0.0011101266147454374 0.0 0.4677825018728002 2.9824297112563987E-5 86-87 2.3196675531994214E-5 0.0011416078172531438 0.0 0.46788688691269414 2.9824297112563987E-5 88 2.3196675531994214E-5 0.001265875721888827 0.0 0.467896828345065 2.9824297112563987E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 47615 0.0 55.97006 1 GTATCAA 89890 0.0 37.272614 1 ATCAACG 110585 0.0 29.865477 3 TCAACGC 111040 0.0 29.728004 4 CAACGCA 112905 0.0 29.18871 5 TATCAAC 114390 0.0 29.022215 2 AACGCAG 116740 0.0 28.36333 6 ACGCAGA 136160 0.0 24.193354 7 CGCAGAG 137715 0.0 23.9141 8 GCAGAGT 158000 0.0 20.605587 9 GAGTACT 86255 0.0 19.718693 12-13 GTGGTAT 18480 0.0 19.587812 1 GTACATG 122700 0.0 19.363739 1 TACATGG 120885 0.0 19.231646 2 TGGTATC 17340 0.0 19.135958 2 CAGAGTA 155175 0.0 18.770233 10-11 ACATGGG 123530 0.0 18.484095 3 GTACTTT 93630 0.0 18.125889 14-15 AGAGTAC 146555 0.0 17.73498 10-11 AGTACTT 93345 0.0 16.547197 12-13 >>END_MODULE