##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139849_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32091135 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.939723135376795 31.0 30.0 33.0 28.0 34.0 2 31.368198881092862 31.0 31.0 34.0 28.0 34.0 3 31.501534489197716 31.0 31.0 34.0 28.0 34.0 4 35.15626427672315 37.0 35.0 37.0 32.0 37.0 5 35.19145165791113 37.0 35.0 37.0 33.0 37.0 6 35.05776408344548 37.0 35.0 37.0 32.0 37.0 7 35.07883357818289 37.0 35.0 37.0 32.0 37.0 8 35.18018923294549 37.0 35.0 37.0 32.0 37.0 9 36.89961623357977 39.0 37.0 39.0 33.0 39.0 10-11 36.88504410953368 39.0 37.0 39.0 33.0 39.0 12-13 36.8055048068571 39.0 37.0 39.0 32.0 39.0 14-15 37.9808457226583 40.0 37.0 41.0 33.0 41.0 16-17 38.02580479001443 40.0 37.0 41.0 33.0 41.0 18-19 38.08941614249542 40.0 37.5 41.0 33.0 41.0 20-21 38.10865286752396 40.0 38.0 41.0 33.0 41.0 22-23 38.05920254128431 40.0 38.0 41.0 33.0 41.0 24-25 38.08576122264317 40.0 37.5 41.0 33.0 41.0 26-27 37.97205534513821 40.0 37.0 41.0 33.0 41.0 28-29 37.93224304318484 40.0 37.0 41.0 33.0 41.0 30-31 37.85288455030624 40.0 37.0 41.0 33.0 41.0 32-33 37.76164006212598 40.0 37.0 41.0 32.5 41.0 34-35 37.682247830621534 40.0 37.0 41.0 32.0 41.0 36-37 37.58963254106604 40.0 37.0 41.0 32.0 41.0 38-39 37.56960190825927 40.0 37.0 41.0 32.0 41.0 40-41 37.50327970987342 40.0 36.5 41.0 31.0 41.0 42-43 37.4640758804142 40.0 36.0 41.0 31.0 41.0 44-45 37.40623828282368 40.0 36.0 41.0 31.0 41.0 46-47 37.28920115045858 39.5 36.0 41.0 31.0 41.0 48-49 37.23301661499147 39.0 36.0 41.0 31.0 41.0 50-51 37.18310429481289 39.0 36.0 41.0 31.0 41.0 52-53 37.11964022498127 39.0 36.0 41.0 31.0 41.0 54-55 36.99081437327797 39.0 35.5 41.0 31.0 41.0 56-57 36.85996082622721 39.0 35.0 40.5 30.0 41.0 58-59 36.70051980706279 39.0 35.0 40.0 30.0 41.0 60-61 36.550728903527755 38.5 35.0 40.0 30.0 41.0 62-63 36.38679282716551 38.0 35.0 40.0 30.0 41.0 64-65 36.22161950683133 38.0 34.5 40.0 29.5 41.0 66-67 35.98428293740235 37.5 34.0 40.0 29.0 41.0 68-69 35.69783649095402 37.0 34.0 40.0 29.0 41.0 70-71 35.41975208511782 36.5 34.0 39.0 29.0 41.0 72-73 35.152578871882156 36.0 34.0 39.0 29.0 40.5 74-75 34.84814576213944 36.0 34.0 39.0 29.0 40.0 76-77 34.53923408211057 35.0 33.0 38.0 29.0 40.0 78-79 34.487360320934044 35.0 33.0 37.0 29.0 39.0 80-81 34.22261494783746 35.0 33.0 37.0 29.0 39.0 82-83 33.99712768937345 35.0 33.0 36.5 29.0 39.0 84-85 33.75757141110509 35.0 33.0 36.0 29.0 37.5 86-87 33.52919031549347 35.0 33.0 36.0 29.0 37.0 88-89 33.35608391398579 35.0 33.0 35.0 29.0 37.0 90-91 33.2233279200451 35.0 33.0 35.0 29.0 36.0 92-93 33.14407858998004 35.0 33.0 35.0 29.0 36.0 94-95 33.09372668467863 35.0 33.0 35.0 29.0 36.0 96-97 33.12537970281039 35.0 33.0 35.0 29.0 36.0 98-99 33.22518734221517 35.0 33.0 35.0 29.0 35.0 100 32.786022100455575 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 4.0 16 7.0 17 364.0 18 3701.0 19 12653.0 20 26638.0 21 44667.0 22 68879.0 23 103817.0 24 152202.0 25 217114.0 26 297599.0 27 391789.0 28 499667.0 29 620825.0 30 765592.0 31 940724.0 32 1166981.0 33 1480094.0 34 1955025.0 35 2633144.0 36 3814776.0 37 5800596.0 38 7123069.0 39 3819494.0 40 151712.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.618774156788156 19.844854349963004 9.821615844998938 28.714755648249895 2 13.79729012389247 23.795256852087032 37.73928531976198 24.66816770425851 3 17.042921666684585 28.575165696071515 29.71883044959301 24.66308218765089 4 11.429673646631693 20.261629886259865 39.569429376679885 28.739267090428555 5 12.252676088714223 39.71584313236703 35.238982349958704 12.79249842896005 6 26.772046740427236 41.6164584731266 18.961395307034934 12.650099479411233 7 24.190711858586493 35.402213103400676 23.69093209074718 16.716142947265656 8 23.964696169206853 37.64249223344702 21.321287015869025 17.071524581477096 9 25.613737251736346 17.15673814590852 21.683707977296535 35.5458166250586 10-11 22.724077848913726 28.283223700252424 29.546119200832255 19.446579250001598 12-13 24.022258795147007 26.17542040815945 29.760704942346226 20.041615854347313 14-15 21.448906372429644 27.109321624180634 27.81912512598884 23.622646877400875 16-17 20.26360862587129 30.153885177323893 28.470968695871928 21.11153750093289 18-19 20.215947803278816 29.133976238826957 30.6118236486778 20.03825230921643 20-21 21.30591567720789 28.151211551480827 30.468580159840027 20.074292611471265 22-23 20.929725969020524 28.091178541450606 30.37594789398252 20.603147595546346 24-25 20.58314454853285 28.2281794916251 30.510845986578378 20.677829973263677 26-27 20.569653506430928 28.41352206027953 30.325425925805227 20.691398507484312 28-29 20.55787289047438 28.429318013959854 30.40735778917124 20.605451306394528 30-31 20.864807845310782 28.283097228423674 30.31071057940391 20.54138434686163 32-33 20.64819258982675 28.447360405699396 30.280090147382865 20.62435685709099 34-35 20.766544594468012 28.490456406714987 30.30443554767046 20.43856345114654 36-37 20.75371777529453 28.36197871431455 30.257237454066665 20.62706605632425 38-39 20.596593697172143 28.51584842251549 30.290754965887285 20.59680291442508 40-41 20.854678515420805 28.36815684364753 30.123260797236796 20.653903843694874 42-43 20.775124834419564 28.491469600622437 29.8946652279248 20.838740337033197 44-45 20.832923613654224 28.72051078672889 29.67653522148351 20.770030378133374 46-47 20.922615428862517 28.76755363333955 29.291044020374297 21.01878691742364 48-49 20.939894255291264 28.86115293262031 29.174242432380755 21.024710379707674 50-51 20.967289013506786 28.996634304123543 28.924263466682724 21.111813215686944 52-53 21.071815197480838 29.024711681531162 28.71879715362046 21.184675967367536 54-55 21.057000056694818 28.970111918900628 28.806045220287096 21.166842804117458 56-57 21.09878817624324 29.06140822823688 28.708715042208656 21.13108855331123 58-59 21.07030358027888 29.070424438402636 28.75597081336352 21.103301167954967 60-61 21.19284926392745 29.063090195068884 28.686729938081278 21.057330602922384 62-63 21.081637611953095 29.148732286495456 28.7097153032539 21.05991479829755 64-65 21.031445950037476 29.03601452438866 28.725830132304043 21.206709393269826 66-67 21.14118679403437 29.139726569461523 28.555401812286256 21.163684824217853 68-69 21.07713436725015 29.050308866527054 28.684877141770315 21.187679624452485 70-71 21.099239411783785 28.83720795079114 28.7286791681016 21.33487346932348 72-73 21.109815337070927 28.931920900255818 28.698109285630135 21.260154477043116 74-75 20.997395304718413 29.064999999617147 28.698959033075123 21.238645662589317 76-77 21.06741995104554 29.050473953239447 28.640399370930837 21.241706724784173 78-79 21.035747978853603 29.048218784614505 28.664507849940808 21.251525386591087 80-81 21.03787643915687 29.08745754873972 28.616396730538813 21.258269281564594 82-83 21.092297214528994 29.018903018225085 28.726134015275445 21.162665751970472 84-85 21.174412942063505 29.057339438015017 28.616031776421192 21.152215843500283 86-87 20.96788389399439 29.137218522469148 28.759891147748817 21.135006435787638 88-89 21.05995406761408 29.100253297549138 28.625417524174672 21.21437511066211 90-91 21.1560800241092 29.06143153849851 28.677612417074265 21.104876020318024 92-93 21.099270097936635 29.113001375010022 28.6550313024503 21.132697224603042 94-95 20.90940544443629 29.175702840823558 28.680355433636013 21.234536281104138 96-97 20.988611199270725 29.369842270988535 28.7200899923023 20.921456537438438 98-99 21.82071094729578 31.311642774708616 29.028387768536472 17.839258509459132 100 21.105656258597595 32.21978556805523 22.858407181243745 23.816150992103434 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 24140.0 1 19774.0 2 11686.0 3 7686.0 4 8101.5 5 12314.0 6 18284.5 7 24310.0 8 31854.5 9 37928.0 10 39706.5 11 42941.5 12 52121.5 13 77907.5 14 127569.5 15 191200.0 16 244347.5 17 268726.5 18 274080.5 19 255815.5 20 230121.0 21 216047.0 22 212316.0 23 231180.0 24 271082.5 25 329650.5 26 406677.0 27 488838.0 28 563944.0 29 643993.5 30 728468.5 31 812344.5 32 898302.5 33 977317.5 34 1054750.0 35 1126345.5 36 1197355.0 37 1263079.5 38 1303074.5 39 1325978.0 40 1341462.0 41 1343292.5 42 1337037.0 43 1339434.5 44 1339056.5 45 1335250.5 46 1324242.5 47 1304525.0 48 1275886.0 49 1222328.5 50 1163869.5 51 1099057.5 52 1016755.0 53 929587.5 54 844569.0 55 761451.5 56 683381.5 57 606797.5 58 534280.0 59 466899.5 60 391678.5 61 312299.5 62 238802.0 63 180907.0 64 137967.0 65 103782.0 66 76687.0 67 57973.0 68 43793.0 69 31648.5 70 22886.0 71 16787.5 72 12395.5 73 9049.0 74 6411.0 75 4592.0 76 3334.5 77 2317.5 78 1627.5 79 1164.5 80 806.5 81 563.0 82 437.5 83 335.5 84 249.0 85 187.0 86 144.5 87 107.5 88 79.5 89 65.5 90 61.0 91 60.5 92 50.0 93 40.5 94 36.0 95 48.0 96 49.0 97 26.5 98 13.0 99 13.5 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.14668848577652363 6 0.006490889150539549 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 1.5580626861592775E-6 20-21 3.117673856147286E-6 22-23 4.914213204122703E-4 24-25 3.8722802071894754E-4 26-27 0.0032946901707279373 28-29 6.620242334674941E-4 30-31 9.410005809737587E-6 32-33 3.1453855880225224E-6 34-35 3.1565633150493083E-6 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0024420377525091524 48-49 0.0 50-51 3.907711077774749E-5 52-53 0.0 54-55 5.198180006285293E-6 56-57 2.1160462127704405E-4 58-59 7.240180430240835E-5 60-61 1.605394009711278E-4 62-63 0.0 64-65 8.289111408711217E-4 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 2.928809204944879E-4 76-77 4.447766474778418E-5 78-79 2.854242086999918E-4 80-81 0.0 82-83 0.0 84-85 1.4184742368299581E-5 86-87 0.0 88-89 7.064041729704582E-4 90-91 0.0 92-93 8.789834457831863E-5 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 9881.0 20-21 24520.0 22-23 27545.0 24-25 30045.0 26-27 38056.0 28-29 59264.0 30-31 85374.0 32-33 104231.0 34-35 141634.0 36-37 199843.0 38-39 258703.0 40-41 259747.0 42-43 293597.0 44-45 352164.0 46-47 339800.0 48-49 311467.0 50-51 386650.0 52-53 249123.0 54-55 259871.0 56-57 276030.0 58-59 280783.0 60-61 279824.0 62-63 253718.0 64-65 258843.0 66-67 277581.0 68-69 288097.0 70-71 291518.0 72-73 268715.0 74-75 261473.0 76-77 274231.0 78-79 295890.0 80-81 310954.0 82-83 295805.0 84-85 289210.0 86-87 307686.0 88-89 345667.0 90-91 382339.0 92-93 408272.0 94-95 482187.0 96-97 1056713.0 98-99 1962812.0 100-101 1.9511272E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.90564763580387 #Duplication Level Percentage of deduplicated Percentage of total 1 87.91822437137206 70.251626573844 2 7.654157281015034 12.232207892916199 3 2.1247555612005793 5.093399075565245 4 0.9125480757167033 2.9167097995579905 5 0.47841806416993327 1.9114152629083045 6 0.266379706715081 1.2771145789262424 7 0.1723501055357253 0.9640222762051894 8 0.10307073975834355 0.6588747370153472 9 0.07929504662242119 0.5702509849208244 >10 0.2835242819189346 3.5238833753195746 >50 0.0055419275219325565 0.2973452534168553 >100 0.0016284673772114912 0.19639087886935552 >500 3.56629431959779E-5 0.020674167655403027 >1k 7.070813284483595E-5 0.08608514287943195 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.1161253723185545E-6 3.1161253723185545E-6 2 3.1161253723185545E-6 3.1161253723185543E-5 0.0 3.1161253723185545E-6 3.1161253723185545E-6 3 3.1161253723185545E-6 3.1161253723185543E-5 0.0 1.5580626861592772E-5 3.1161253723185545E-6 4 3.1161253723185545E-6 6.855475819100821E-5 0.0 1.869675223391133E-5 3.1161253723185545E-6 5 3.1161253723185545E-6 6.855475819100821E-5 0.0 1.869675223391133E-5 3.1161253723185545E-6 6 3.1161253723185545E-6 6.855475819100821E-5 0.0 2.1812877606229882E-5 3.1161253723185545E-6 7 6.232250744637109E-6 6.855475819100821E-5 0.0 2.1812877606229882E-5 3.1161253723185545E-6 8 6.232250744637109E-6 6.855475819100821E-5 0.0 3.1161253723185543E-5 3.1161253723185545E-6 9 9.348376116955664E-6 1.2776114026506074E-4 0.0 6.543863281868965E-5 6.232250744637109E-6 10-11 9.348376116955664E-6 1.2776114026506074E-4 0.0 7.634507162180459E-5 1.5580626861592772E-5 12-13 9.348376116955664E-6 1.2776114026506074E-4 0.0 9.504182385571591E-5 1.869675223391133E-5 14-15 9.348376116955664E-6 1.8852558502527257E-4 0.0 1.0594826265883085E-4 2.4929002978548436E-5 16-17 9.348376116955664E-6 1.9475783576990965E-4 0.0 1.3555145369585712E-4 2.4929002978548436E-5 18-19 1.0906438803114941E-5 2.1657071337613954E-4 0.0 1.6359658204672414E-4 3.116125372318555E-5 20-21 1.4022564175433495E-5 2.3682552829621013E-4 0.0 2.1033846263150246E-4 4.050962984014121E-5 22-23 1.5580626861592772E-5 2.8200934619482915E-4 0.0 2.6331259396091786E-4 4.050962984014121E-5 24-25 1.7138689547752052E-5 3.0538028648721834E-4 0.0 3.14728662604174E-4 4.3625755212459765E-5 26-27 1.869675223391133E-5 3.1784478797649256E-4 0.0 4.0198017302909357E-4 4.3625755212459765E-5 28-29 1.869675223391133E-5 3.240770387211297E-4 0.0 7.805894057657979E-4 4.674188058477832E-5 30-31 1.869675223391133E-5 3.583544178166338E-4 0.0 0.0017777495249077355 4.985800595709687E-5 32-33 1.869675223391133E-5 3.583544178166338E-4 0.0 0.0034542249752151175 4.985800595709687E-5 34-35 1.869675223391133E-5 4.1911886257684557E-4 0.0 0.005585654729881009 6.232250744637109E-5 36-37 1.869675223391133E-5 4.7988330733705746E-4 0.0 0.008683083349965651 6.232250744637109E-5 38-39 1.869675223391133E-5 5.00138122257128E-4 0.0 0.01386364178144525 6.855475819100821E-5 40-41 1.869675223391133E-5 5.593445043311806E-4 0.0 0.019394764317310687 6.855475819100821E-5 42-43 1.869675223391133E-5 5.811573819374104E-4 0.0 0.024006629868342143 6.855475819100821E-5 44-45 1.869675223391133E-5 6.590605162453743E-4 0.0 0.029048520720753566 7.167088356332676E-5 46-47 1.869675223391133E-5 7.151507729471083E-4 0.0 0.03441293054919996 7.167088356332676E-5 48-49 1.869675223391133E-5 7.213830236917454E-4 0.0 0.03941119564639892 7.167088356332676E-5 50-51 1.869675223391133E-5 8.024022833720279E-4 0.0 0.044372067239130064 8.101925968028242E-5 52-53 1.869675223391133E-5 8.101925968028242E-4 0.0 0.049974860658558815 8.569344773876026E-5 54-55 1.869675223391133E-5 8.25773223664417E-4 0.0 0.05511490946019828 8.725151042491953E-5 56-57 1.869675223391133E-5 8.444699758983283E-4 0.0 0.060008784357424565 1.0127407460035303E-4 58-59 1.869675223391133E-5 8.475861012706468E-4 0.0 0.06423580842497469 1.1373857608962726E-4 60-61 1.869675223391133E-5 8.507022266429654E-4 0.0 0.06826651659406874 1.1529663877578653E-4 62-63 2.1812877606229882E-5 8.600506027599211E-4 0.0 0.07207753792441432 1.1841276414810508E-4 64-65 2.1812877606229882E-5 8.865376684246288E-4 0.0 0.07518431492061592 1.1841276414810508E-4 66-67 2.1812877606229882E-5 8.896537937969474E-4 0.0 0.07791871493482547 1.1997082683426436E-4 68-69 2.1812877606229882E-5 9.036763579723809E-4 0.0 0.0804427764864035 1.2931920295122004E-4 70-71 2.1812877606229882E-5 9.130247340893365E-4 0.0 0.08241528384708113 1.3866757906817569E-4 72-73 2.1812877606229882E-5 9.176989221478143E-4 0.0 0.08427561069435531 1.4645789249897206E-4 74-75 2.1812877606229882E-5 9.457440504986813E-4 0.0 0.0857947218133606 1.4957401787129063E-4 76-77 2.1812877606229882E-5 0.0010127407460035303 0.0 0.08714088797420222 1.4957401787129063E-4 78-79 2.1812877606229882E-5 0.0010376697489820788 0.0 0.08801340307845142 1.4957401787129063E-4 80-81 2.1812877606229882E-5 0.0010376697489820788 0.0 0.08837331555895421 1.5269014324360917E-4 82-83 2.1812877606229882E-5 0.0010439019997267158 0.0 0.08882359567525425 1.5580626861592774E-4 84-85 2.1812877606229882E-5 0.0010563665012159901 0.0 0.08908379214384285 1.57364331302087E-4 86-87 2.1812877606229882E-5 0.0010968761310561313 0.0 0.08920376297067711 1.6359658204672412E-4 88 2.1812877606229882E-5 0.0012184050205765549 0.0 0.08921466940948022 1.6827077010520195E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 53255 0.0 53.755478 1 GTATCAA 100150 0.0 37.090385 1 ATCAACG 123915 0.0 29.461683 3 TCAACGC 124645 0.0 29.309227 4 CAACGCA 126155 0.0 28.882322 5 TATCAAC 128415 0.0 28.63403 2 AACGCAG 130480 0.0 28.023638 6 ACGCAGA 150180 0.0 24.237776 7 CGCAGAG 150880 0.0 24.125326 8 GCAGAGT 171385 0.0 21.076012 9 GAGTACT 101425 0.0 19.608242 12-13 CAGAGTA 170305 0.0 18.704338 10-11 GTACATG 120055 0.0 18.435871 1 AGAGTAC 160935 0.0 18.241207 10-11 TACATGG 118530 0.0 18.215305 2 ACATGGG 118425 0.0 17.815584 3 GTACTTT 111560 0.0 17.745682 14-15 ACCGAAC 3180 0.0 17.295736 8 AGTACTT 110000 0.0 17.144077 12-13 TGGTATC 19995 0.0 16.99125 2 >>END_MODULE