##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139848_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7592883 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.824969119107987 31.0 31.0 34.0 30.0 34.0 2 31.99008426706957 31.0 31.0 34.0 30.0 34.0 3 32.015510050661916 31.0 31.0 34.0 30.0 34.0 4 35.73012214201114 37.0 35.0 37.0 35.0 37.0 5 35.545678235790014 37.0 35.0 37.0 33.0 37.0 6 35.55116692829324 37.0 35.0 37.0 33.0 37.0 7 35.44537470154617 37.0 35.0 37.0 33.0 37.0 8 35.42773344459542 37.0 35.0 37.0 33.0 37.0 9 36.96272311847819 39.0 37.0 39.0 33.0 39.0 10-11 36.85336854262077 39.0 37.0 39.0 33.0 39.0 12-13 36.798035344413975 39.0 37.0 39.0 32.0 39.0 14-15 37.90904159856012 40.0 37.0 41.0 33.0 41.0 16-17 37.8942603224625 40.0 37.0 41.0 33.0 41.0 18-19 37.9399699692462 40.0 37.0 41.0 33.0 41.0 20-21 37.92413263229362 40.0 37.0 41.0 32.5 41.0 22-23 37.85823281506589 40.0 37.0 41.0 32.0 41.0 24-25 37.77114230802178 40.0 37.0 41.0 32.0 41.0 26-27 37.58370450353377 39.0 36.5 41.0 32.0 41.0 28-29 37.47932042200949 39.0 36.0 41.0 32.0 41.0 30-31 37.33004525179547 39.0 36.0 40.5 31.5 41.0 32-33 37.491782119209965 39.0 36.0 41.0 32.0 41.0 34-35 37.4481824290046 39.0 36.0 41.0 31.5 41.0 36-37 37.361557697669625 39.0 36.0 41.0 31.0 41.0 38-39 37.26113449185243 39.0 36.0 41.0 31.0 41.0 40-41 37.174460175470884 39.0 36.0 41.0 31.0 41.0 42-43 37.140504288995245 39.0 36.0 40.0 31.0 41.0 44-45 37.17502153495401 39.0 36.0 40.5 31.0 41.0 46-47 37.28685351410196 39.0 36.0 41.0 31.0 41.0 48-49 37.240233099164726 39.0 36.0 41.0 31.0 41.0 50-51 37.14826992685907 39.0 36.0 41.0 31.0 41.0 52-53 37.06767306640188 39.0 35.5 41.0 31.0 41.0 54-55 36.96066452360655 39.0 35.0 40.0 31.0 41.0 56-57 36.85647601516722 39.0 35.0 40.0 31.0 41.0 58-59 36.73378053915645 39.0 35.0 40.0 30.0 41.0 60-61 36.5401428671408 38.0 35.0 40.0 30.0 41.0 62-63 36.34907992709315 38.0 35.0 40.0 30.0 41.0 64-65 36.166378170075795 38.0 34.0 40.0 29.0 41.0 66-67 35.933808638885694 37.5 34.0 40.0 29.0 41.0 68-69 35.67172579224426 37.0 34.0 40.0 29.0 41.0 70-71 35.39136001468949 36.5 34.0 39.0 29.0 41.0 72-73 35.09089334534124 36.0 34.0 39.0 29.0 40.0 74-75 34.74636412583311 36.0 33.0 39.0 28.5 40.0 76-77 33.677930848437285 35.0 31.5 37.0 27.5 39.0 78-79 34.087043102620214 35.0 33.0 37.0 28.5 39.0 80-81 33.9658221171413 35.0 33.0 37.0 29.0 39.0 82-83 33.71312946234538 35.0 33.0 36.0 29.0 38.5 84-85 33.45980310637526 35.0 32.5 36.0 28.0 37.0 86-87 33.2240188650123 35.0 32.0 36.0 28.0 37.0 88-89 32.99483778501235 34.0 32.0 35.0 28.0 36.5 90-91 32.8493740636777 34.0 32.0 35.0 27.5 36.0 92-93 32.75611998096332 34.0 32.0 35.0 27.5 36.0 94-95 32.70512425646663 34.0 32.0 35.0 28.0 36.0 96-97 32.7051582833296 34.0 32.0 35.0 28.5 35.0 98-99 32.80963271898057 34.0 32.0 35.0 29.0 35.0 100-101 32.161436298140046 33.5 30.5 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 1.0 19 15.0 20 65.0 21 469.0 22 1922.0 23 6232.0 24 15708.0 25 32272.0 26 56923.0 27 88953.0 28 126736.0 29 168345.0 30 214173.0 31 264975.0 32 327351.0 33 408237.0 34 519972.0 35 675086.0 36 932191.0 37 1369038.0 38 1589562.0 39 767902.0 40 26753.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.09384657894064 23.222815789841064 15.953059720933368 23.730277910284922 2 13.193134414026932 23.43279825482546 42.13231237338812 21.24175495775949 3 16.133134146805634 29.024337659358114 32.40487177268503 22.437656421151228 4 11.410343080487346 20.346790540562786 40.895190930770305 27.347675448179565 5 11.646394610109837 39.328413111121705 37.01415351904587 12.011038759722593 6 26.837319478954104 41.06722585705928 19.885887861815842 12.20956680217077 7 23.655862996967027 34.098207492463665 25.660029266880578 16.585900243688727 8 22.76546639339318 38.24421346202931 22.592975895055396 16.39734424952212 9 24.839566846949552 16.87178860411633 22.632078307024923 35.656566241909196 10-11 22.725922778728815 27.996372128527746 30.592428540309204 18.685276552434242 12-13 23.710848698709043 25.748664901065904 30.45727163186895 20.083214768356104 14-15 20.937642650050403 27.021314172931966 28.16142803220174 23.879615144815894 16-17 20.22567978799091 30.048873405381514 28.86626579999531 20.859181006632262 18-19 20.26563148224975 29.270056698077795 30.54895724266909 19.915354577003367 20-21 21.230901609083432 28.476116894407994 30.250943732458747 20.042037764049827 22-23 20.884064192734698 28.418941253786663 30.124208138865676 20.572786414612963 24-25 20.65092124910595 28.589707741844688 30.17799738675912 20.58137362229024 26-27 20.604964541812183 28.75377554881417 30.040191219764296 20.60106868960935 28-29 20.52975392809264 28.80952625953445 30.09692958258566 20.56379022978725 30-31 20.848301303539404 28.639536842244322 29.99805146123894 20.514110392977333 32-33 20.652991143434292 28.857503619666105 29.872003678517352 20.617501558382255 34-35 20.78955451310772 28.919251511815297 29.914835734686392 20.376358240390598 36-37 20.770110540541463 28.840975036814413 29.85659881954474 20.532315603099384 38-39 20.602344866057436 28.942619654669393 29.86562537872441 20.58941010054876 40-41 20.822652088605103 28.800344202594264 29.801045106683695 20.57595860211694 42-43 20.742231248836436 28.910300754650354 29.53424102546754 20.813226971045673 44-45 20.838347524265263 29.055429422929073 29.35354476220927 20.752678290596393 46-47 20.899137908393094 29.003369237314164 29.135391542342155 20.96210131195059 48-49 20.807398577927103 29.13120393944788 29.134779594624487 20.92661788800053 50-51 20.8569557154069 29.17866971598217 28.986182393725613 20.97819217488532 52-53 20.93403916592069 29.106157199828026 28.929360027071706 21.03044360717958 54-55 20.91249597042603 29.0357059714487 28.995151443338152 21.056646614787116 56-57 20.944033109133386 29.19091323173868 28.854115629411364 21.01093802971657 58-59 20.90038295019392 29.232243243936185 28.92512670709374 20.942247098776157 60-61 21.01816564180036 29.224241337328362 28.84553990188626 20.91205311898502 62-63 20.92785001277152 29.2561969593003 28.881131830720847 20.934821197207334 64-65 20.871003426202577 29.19952228341171 28.882639856504188 21.04683443388152 66-67 20.968840898608214 29.278839921180477 28.722945660860365 21.029373519350937 68-69 20.919886103408846 29.215649047123776 28.82764536070856 21.036819488758816 70-71 20.96653757279439 28.947439980927737 28.897234854225335 21.18878759205254 72-73 20.990100965867843 29.055665398488394 28.840003753500387 21.11422988214338 74-75 20.85215319840973 29.137252738788465 28.805027268758813 21.20556679404299 76-77 20.94975241661742 29.083661798552185 28.77835987613257 21.188225908697824 78-79 20.94856181271175 29.051502598923605 28.76864104932909 21.231294539035556 80-81 20.950578004187467 29.059113507279015 28.77246992860572 21.217838559927795 82-83 20.975176458753193 28.990190910602216 28.893185834757283 21.141446795887305 84-85 21.05224346477775 28.999912104951196 28.81062673677236 21.137217693498698 86-87 20.904784173169613 29.046124070157582 28.876640188037193 21.172451568635612 88-89 20.98381596072999 28.94975251724899 28.875882644586266 21.190548877434754 90-91 21.01547302825515 28.91642174350526 28.938717474924204 21.129387753315385 92-93 21.003813349815786 28.84713683787693 28.951419210471517 21.197630601835765 94-95 20.84200528013228 28.836182866146864 29.05765270428921 21.264159149431645 96-97 20.732379576029018 28.916501543424683 29.172855376603813 21.17826350394249 98-99 20.876173052940715 29.518972720857832 29.20604763699144 20.39880658921001 100-101 24.19218021548474 36.65792131609283 30.25897268697923 8.890925781443205 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2457.0 1 2071.5 2 2456.5 3 3389.0 4 4364.5 5 6549.0 6 8457.5 7 10117.5 8 11370.0 9 11492.0 10 10908.0 11 10324.0 12 11403.5 13 14839.0 14 22640.5 15 33437.0 16 42205.0 17 47078.5 18 48637.0 19 48126.5 20 46680.0 21 45983.0 22 47560.0 23 53355.5 24 64116.0 25 79741.5 26 99173.0 27 120308.5 28 143398.0 29 167215.5 30 190277.5 31 213419.5 32 236552.5 33 257556.5 34 276571.0 35 294061.0 36 312299.5 37 326418.5 38 333789.0 39 338419.5 40 340671.5 41 340846.0 42 338166.5 43 334323.5 44 329316.5 45 322923.5 46 313675.0 47 303224.5 48 291428.0 49 276495.5 50 261533.5 51 244349.5 52 224636.0 53 204310.5 54 184759.0 55 166799.0 56 149544.5 57 132302.5 58 115422.5 59 99175.0 60 82613.0 61 66633.0 62 51720.5 63 39128.5 64 29393.0 65 22339.0 66 17137.5 67 13160.0 68 10194.5 69 7197.0 70 4780.5 71 3353.0 72 2318.5 73 1606.5 74 1121.5 75 797.5 76 569.5 77 376.0 78 255.5 79 174.5 80 130.0 81 104.5 82 84.5 83 59.0 84 36.0 85 23.5 86 18.0 87 15.5 88 14.0 89 13.5 90 9.0 91 5.0 92 5.5 93 3.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.3170227962158774E-5 2 0.0038193661090260445 3 0.0 4 0.0 5 1.3170227962158774E-5 6 1.3170227962158774E-5 7 0.0 8 1.3170227962158774E-5 9 1.3170227962158774E-5 10-11 1.3170227962158774E-5 12-13 0.0 14-15 1.3170227962158774E-5 16-17 1.3170227962158774E-5 18-19 4.346175227512396E-4 20-21 5.268357625071798E-4 22-23 2.107629526677782E-4 24-25 1.1200344179988214E-4 26-27 0.0023994182333637263 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03317061548738845 38-39 0.01717824569608792 40-41 0.02175613776339969 42-43 0.01067635314713984 44-45 0.004091870112946018 46-47 0.005280613337621491 48-49 0.009482051131143306 50-51 0.007095107653701813 52-53 0.011513447379659232 54-55 0.0037073275586139496 56-57 0.017586653631153807 58-59 0.013847536517991085 60-61 0.014240190689168148 62-63 0.005260849153430778 64-65 0.006991284121188181 66-67 3.9475923949790415E-4 68-69 7.28377066239651E-4 70-71 0.0011039323938814545 72-73 9.054488346914655E-5 74-75 0.0038218947001252127 76-77 0.004578007556335725 78-79 0.0037099725522146436 80-81 5.847163183328289E-4 82-83 0.003548299362210931 84-85 0.004948922432987625 86-87 0.0016131459664293325 88-89 0.07485973597898701 90-91 0.0010372213050584903 92-93 9.721484334557106E-6 94-95 5.17403719874044E-4 96-97 0.011697135675414411 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 219.0 20-21 834.0 22-23 1682.0 24-25 3877.0 26-27 4605.0 28-29 7516.0 30-31 19683.0 32-33 25543.0 34-35 36610.0 36-37 56606.0 38-39 65362.0 40-41 65664.0 42-43 74446.0 44-45 87025.0 46-47 88480.0 48-49 80530.0 50-51 73498.0 52-53 70978.0 54-55 77135.0 56-57 81287.0 58-59 81551.0 60-61 79538.0 62-63 75560.0 64-65 80486.0 66-67 85751.0 68-69 86804.0 70-71 86567.0 72-73 82990.0 74-75 82692.0 76-77 84473.0 78-79 92068.0 80-81 93651.0 82-83 90118.0 84-85 90552.0 86-87 95667.0 88-89 101527.0 90-91 110329.0 92-93 114470.0 94-95 133024.0 96-97 178410.0 98-99 593990.0 100-101 4151085.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.1802667045699 #Duplication Level Percentage of deduplicated Percentage of total 1 92.35741019030961 82.36458472915173 2 5.597168223593332 9.983139099407943 3 1.207064737407239 3.229390656349776 4 0.4067477763830393 1.4509550071732082 5 0.17840542625197964 0.7955121747347009 6 0.08930872687242948 0.47787456489173097 7 0.04661340702056413 0.2909897249071806 8 0.03223913639858809 0.23000758258808746 9 0.020252896769559253 0.16255428619044746 >10 0.06338825497473166 0.8605406465066939 >50 9.743415410268894E-4 0.05979352548942487 >100 3.863996041093814E-4 0.07149811225987997 >500 4.0482873752753285E-5 0.02315989034914846 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3170227962158774E-5 2 0.0 3.9510683886476325E-5 0.0 0.0 1.3170227962158774E-5 3 0.0 3.9510683886476325E-5 0.0 0.0 1.3170227962158774E-5 4 0.0 5.2680911848635096E-5 0.0 0.0 1.3170227962158774E-5 5 0.0 5.2680911848635096E-5 0.0 0.0 1.3170227962158774E-5 6 0.0 5.2680911848635096E-5 0.0 0.0 1.3170227962158774E-5 7 0.0 5.2680911848635096E-5 0.0 0.0 2.6340455924317548E-5 8 0.0 7.902136777295265E-5 0.0 0.0 2.6340455924317548E-5 9 0.0 1.9755341943238162E-4 0.0 1.3170227962158774E-5 2.6340455924317548E-5 10-11 1.3170227962158774E-5 1.9755341943238162E-4 0.0 1.3170227962158774E-5 2.6340455924317548E-5 12-13 1.3170227962158774E-5 1.9755341943238162E-4 0.0 1.3170227962158774E-5 2.6340455924317548E-5 14-15 1.3170227962158774E-5 2.4364921729993735E-4 0.0 1.3170227962158774E-5 3.9510683886476325E-5 16-17 1.3170227962158774E-5 2.5023433128101673E-4 0.0 1.3170227962158774E-5 3.9510683886476325E-5 18-19 1.3170227962158774E-5 2.634045592431755E-4 0.0 1.3170227962158774E-5 3.9510683886476325E-5 20-21 1.3170227962158774E-5 2.7657478720533426E-4 0.0 1.975534194323816E-5 5.2680911848635096E-5 22-23 1.3170227962158774E-5 3.2925569905396936E-4 0.0 2.6340455924317548E-5 5.2680911848635096E-5 24-25 1.3170227962158774E-5 3.490110409972075E-4 0.0 3.9510683886476325E-5 5.2680911848635096E-5 26-27 1.3170227962158774E-5 3.6876638294044566E-4 0.0 1.448725075837465E-4 5.2680911848635096E-5 28-29 1.3170227962158774E-5 3.6876638294044566E-4 0.0 4.543728646944777E-4 5.2680911848635096E-5 30-31 1.3170227962158774E-5 3.819366109026045E-4 0.0 0.0014092143919509888 5.2680911848635096E-5 32-33 1.3170227962158774E-5 3.819366109026045E-4 0.0 0.003918142818742236 7.243625379187325E-5 34-35 2.6340455924317548E-5 4.2144729478908077E-4 0.0 0.0071975295813197695 7.902136777295265E-5 36-37 3.9510683886476325E-5 4.609579786755571E-4 0.0 0.012077099041299597 7.902136777295265E-5 38-39 5.2680911848635096E-5 4.609579786755571E-4 0.0 0.019702661031389526 8.560648175403203E-5 40-41 5.2680911848635096E-5 5.136388905241922E-4 0.0 0.028665001159638572 9.219159573511141E-5 42-43 5.2680911848635096E-5 5.333942324674304E-4 0.0 0.03663957419072571 9.219159573511141E-5 44-45 5.2680911848635096E-5 5.992453722782243E-4 0.0 0.04537143532963697 9.219159573511141E-5 46-47 5.2680911848635096E-5 6.4534117014578E-4 0.0 0.05583518144557212 9.219159573511141E-5 48-49 5.2680911848635096E-5 6.519262841268593E-4 0.0 0.06550871388377774 9.219159573511141E-5 50-51 5.2680911848635096E-5 7.441178798619707E-4 0.0 0.07496493756060774 9.219159573511141E-5 52-53 5.2680911848635096E-5 7.572881078241295E-4 0.0 0.08475700205047279 1.0536182369727019E-4 54-55 5.2680911848635096E-5 7.704583357862883E-4 0.0 0.09514831191261607 1.1853205165942897E-4 56-57 5.2680911848635096E-5 7.770434497673677E-4 0.0 0.10550669620485394 1.2511716564050836E-4 58-59 5.2680911848635096E-5 7.770434497673677E-4 0.0 0.1148180473741002 1.3170227962158775E-4 60-61 5.2680911848635096E-5 8.16554133653844E-4 0.0 0.1237935577303114 1.3170227962158775E-4 62-63 5.2680911848635096E-5 8.297243616160028E-4 0.0 0.13304564287372794 1.448725075837465E-4 64-65 5.2680911848635096E-5 9.35086185313273E-4 0.0 0.14189603606429863 1.448725075837465E-4 66-67 5.2680911848635096E-5 9.416712992943524E-4 0.0 0.15099007847216928 1.448725075837465E-4 68-69 6.585113981079387E-5 9.745968691997494E-4 0.0 0.1597087693831184 1.514576215648259E-4 70-71 6.585113981079387E-5 9.943522111429876E-4 0.0 0.16767017218624336 1.580427355459053E-4 72-73 6.585113981079387E-5 0.0010075224391051462 0.0 0.1739787113801174 1.8438319147022283E-4 74-75 6.585113981079387E-5 0.0010338628950294637 0.0 0.1798262925953159 1.8438319147022283E-4 76-77 6.585113981079387E-5 0.0010470331229916227 0.0 0.18467293648539035 1.9755341943238162E-4 78-79 6.585113981079387E-5 0.001053618236972702 0.0 0.18930227161408913 1.9755341943238162E-4 80-81 6.585113981079387E-5 0.001053618236972702 0.0 0.1918968065226344 2.1730876137561976E-4 82-83 6.585113981079387E-5 0.001053618236972702 0.0 0.1936286914996583 2.3706410331885794E-4 84-85 6.585113981079387E-5 0.0010667884649348607 0.0 0.1951300974873444 2.3706410331885794E-4 86-87 6.585113981079387E-5 0.0010799586928970195 0.0 0.19564373637786858 2.3706410331885794E-4 88-89 6.585113981079387E-5 0.001106299148821337 0.0 0.19569641728971723 2.3706410331885794E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9335 0.0 49.556923 1 GTATCAA 17135 0.0 35.54039 1 ATCAACG 21620 0.0 27.480194 3 TCAACGC 21685 0.0 27.32177 4 CAACGCA 22070 0.0 26.845156 5 TATCAAC 22350 0.0 26.841778 2 AACGCAG 22750 0.0 26.133368 6 ACGCAGA 26225 0.0 22.529015 7 CGCAGAG 26315 0.0 22.389292 8 GTACATG 24080 0.0 20.375875 1 TACATGG 24050 0.0 20.195564 2 ACATGGG 24005 0.0 19.683142 3 GCAGAGT 30470 0.0 19.06558 9 AGAGTAC 28350 0.0 18.33891 10-11 CATGGGG 15760 0.0 18.181934 4 GAGTACT 17615 0.0 17.62496 12-13 TGGTATC 4125 0.0 17.492018 2 GTGGTAT 4460 0.0 17.195066 1 CAGAGTA 30585 0.0 16.762888 10-11 ATGGGGG 9400 0.0 16.22876 5 >>END_MODULE