##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139847_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14947848 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.164139547043828 32.0 25.0 33.0 18.0 33.0 2 30.139121765219983 32.0 29.0 33.0 25.0 33.0 3 31.617162350058685 33.0 32.0 33.0 27.0 34.0 4 31.77539368877714 33.0 32.0 33.0 30.0 34.0 5 32.17239986652259 33.0 33.0 34.0 31.0 34.0 6 35.64326791388299 38.0 36.0 38.0 30.0 38.0 7 35.99711570521723 38.0 37.0 38.0 31.0 38.0 8 36.35506375232074 38.0 37.0 38.0 33.0 38.0 9 36.480403399874014 38.0 38.0 38.0 34.0 38.0 10-11 36.588983544654724 38.0 38.0 38.0 34.0 38.0 12-13 36.613503595969135 38.0 38.0 38.0 34.0 38.0 14-15 36.63507740378414 38.0 38.0 38.0 34.0 38.0 16-17 36.643517414680694 38.0 38.0 38.0 34.0 38.0 18-19 36.65926091836096 38.0 38.0 38.0 34.0 38.0 20-21 36.65428680864601 38.0 38.0 38.0 34.0 38.0 22-23 36.65290893955973 38.0 38.0 38.0 34.0 38.0 24-25 36.65626043898848 38.0 38.0 38.0 34.0 38.0 26-27 36.60294146408857 38.0 38.0 38.0 34.0 38.0 28-29 36.57991312662499 38.0 38.0 38.0 34.0 38.0 30-31 36.57713268749026 38.0 38.0 38.0 34.0 38.0 32-33 36.55132233374553 38.0 38.0 38.0 34.0 38.0 34-35 36.511923815032574 38.0 38.0 38.0 34.0 38.0 36-37 36.492505012849705 38.0 38.0 38.0 34.0 38.0 38-39 36.4650191596022 38.0 38.0 38.0 34.0 38.0 40-41 36.48174983265032 38.0 38.0 38.0 34.0 38.0 42-43 36.43366764549546 38.0 38.0 38.0 34.0 38.0 44-45 36.3811784160446 38.0 38.0 38.0 34.0 38.0 46-47 36.337719460142694 38.0 38.0 38.0 33.0 38.0 48-49 36.28780474295704 38.0 38.0 38.0 33.0 38.0 50-51 36.26297076070853 38.0 38.0 38.0 33.0 38.0 52-53 36.24803749436742 38.0 38.0 38.0 33.0 38.0 54-55 36.21657176139824 38.0 37.0 38.0 33.0 38.0 56-57 36.219258366925914 38.0 37.0 38.0 33.0 38.0 58-59 36.199687112670304 38.0 37.0 38.0 33.0 38.0 60-61 36.18812821379948 38.0 37.0 38.0 33.0 38.0 62-63 36.188763734411495 38.0 37.0 38.0 33.0 38.0 64-65 36.18327035797597 38.0 37.0 38.0 33.0 38.0 66-67 36.18581513410496 38.0 37.0 38.0 33.0 38.0 68-69 36.17014985126029 38.0 37.0 38.0 33.0 38.0 70-71 36.14247713810755 38.0 37.0 38.0 33.0 38.0 72-73 36.11777811585125 38.0 37.0 38.0 33.0 38.0 74-75 36.142470222147196 38.0 37.0 38.0 33.0 38.0 76-77 36.12992650767478 38.0 37.0 38.0 33.0 38.0 78-79 36.12129535251321 38.0 37.0 38.0 33.0 38.0 80-81 36.08629737896789 38.0 37.0 38.0 33.0 38.0 82-83 36.09257899579776 38.0 37.0 38.0 33.0 38.0 84-85 36.09340893054591 38.0 37.0 38.0 33.0 38.0 86-87 36.09362561535692 38.0 37.0 38.0 33.0 38.0 88-89 36.06827491247394 38.0 37.0 38.0 33.0 38.0 90-91 36.054757359424414 38.0 37.0 38.0 33.0 38.0 92-93 36.0094915298478 38.0 37.0 38.0 31.0 38.0 94-95 36.003410773911774 38.0 37.0 38.0 31.5 38.0 96-97 36.03362113180952 38.0 37.0 38.0 32.5 38.0 98-99 36.061978789231134 38.0 37.0 38.0 33.0 38.0 100-101 35.536897446304955 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 7.0 18 50.0 19 111.0 20 218.0 21 754.0 22 3216.0 23 10101.0 24 23535.0 25 45999.0 26 77670.0 27 120101.0 28 172006.0 29 232550.0 30 299096.0 31 378051.0 32 474760.0 33 610906.0 34 822659.0 35 1231270.0 36 2483123.0 37 7961665.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.55766716386198 23.998491287842903 14.904071810203048 23.539769738092065 2 14.583925391802218 21.758115281878705 42.10488359260811 21.553075733710966 3 17.59847823589792 27.86922184202204 30.836435714625477 23.69586420745456 4 12.480478795342313 19.521887030159792 39.56050396016872 28.43713021432918 5 12.82328220934454 37.942493277058034 36.31300984317954 12.921214670417877 6 27.828112782522275 39.785312240263615 19.172940479458983 13.213634497755129 7 24.863170939388734 33.926274872476625 23.718885822226717 17.491668365907923 8 23.018718145916388 38.227790381598744 21.56886395954789 17.184627512936977 9 24.590041322336166 17.784660373854482 22.06450052208184 35.56079778172751 10-11 23.14366589759275 27.966540735495837 29.33142282420854 19.558370542702868 12-13 24.231916192886093 25.352291513801855 29.63334922859799 20.782443064714066 14-15 21.391141526640645 26.830951869889752 27.45037554406248 24.32753105940712 16-17 20.51874692995095 30.07270779287787 28.22362550862256 21.184919768548617 18-19 20.51513033849421 28.814378497827914 30.357523705084503 20.31296745859337 20-21 21.413581554579313 27.818132986572348 30.372230514037106 20.396054944811233 22-23 21.063043207655223 27.91040979953326 30.244291505524977 20.78225548728654 24-25 20.905885842711186 28.115866008686396 30.353093953295655 20.62515419530676 26-27 20.88362631570511 28.239297178281213 30.231439213680172 20.645637292333504 28-29 20.637171374377367 28.307805584681766 30.32202615255841 20.73299688838246 30-31 21.306428812763777 28.03210207312065 30.242394573018945 20.419074541096627 32-33 20.62316363584588 28.385219869389626 30.230942982815513 20.760673511948976 34-35 20.88704000120687 28.36640114404808 30.292166922239794 20.45439193250526 36-37 20.77074036100347 28.266178216638053 30.25180142658893 20.711279995769544 38-39 20.644633969994413 28.12845847543668 30.41974309692725 20.80716445764166 40-41 20.916416266608767 28.01887949084827 30.367456234499112 20.697248008043854 42-43 21.039364100366168 27.99185485429254 30.10381487981665 20.864966165524642 44-45 20.878559657986244 28.310402802442674 29.913985293575486 20.897052245995592 46-47 21.117716967649823 28.11864170795122 29.525024607758095 21.238616716640855 48-49 21.044401947724683 28.239525408348037 29.48059150109502 21.235481142832256 50-51 20.935497079856752 28.353320015239763 29.454674733855196 21.25650817104829 52-53 21.055117003053248 28.387002682057588 29.52814782480119 21.029732490087973 54-55 21.076976051962017 28.334727860626156 29.334994668746827 21.253301418664996 56-57 21.264131412779754 28.554194781715385 29.021898400382018 21.159775405122847 58-59 20.95890328791025 28.832409268800106 29.324051440740163 20.88463600254948 60-61 21.17369857123946 29.040189818704835 28.945678126994146 20.84043348306156 62-63 20.923717202876723 29.25222032752228 28.916568129403604 20.907494340197392 64-65 20.878939127582203 29.152342554830135 28.981188042965258 20.987530274622408 66-67 21.04054146888811 29.101605082784605 28.79520555339285 21.06264789493444 68-69 21.043929146886548 28.93599944196531 28.947960110178357 21.072111300969787 70-71 21.094674069613102 28.525073056378492 29.09411431680991 21.2861385571985 72-73 21.164897801377546 28.440276173491508 29.142430769859466 21.252395255271477 74-75 21.07031246819314 28.575839026975768 29.056584440146626 21.29726406468447 76-77 21.095140306488737 28.5706662788867 29.01845437506021 21.31573903956435 78-79 21.15536630237159 28.585201458827996 28.943799663822677 21.315632574977734 80-81 21.147011922665854 28.57891089540577 28.919519192030002 21.354557989898375 82-83 21.234186049876058 28.556347531581928 29.00007680611088 21.209389612431135 84-85 21.370594119892143 28.54582318366058 28.849947570718314 21.233635125728963 86-87 21.14942934459324 28.62702625076578 28.923313366971108 21.300231037669874 88-89 21.279352332822658 28.58055491554185 28.834895755416973 21.30519699621852 90-91 21.32960685984954 28.565963248341035 28.892660883907773 21.211769007901648 92-93 21.317109229906205 28.604780035356164 28.808584788242058 21.26952594649557 94-95 21.160657802318468 28.720849701297897 28.818285343448373 21.30020715293526 96-97 21.19887637456406 28.703747485866888 28.880678120264903 21.216698019304157 98-99 21.414648748052787 29.25457285369109 28.88416055875121 20.446617839504913 100-101 21.92056534455305 31.827251734988437 26.402639774573196 19.84954314588532 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3686.0 1 3608.5 2 4844.5 3 6508.0 4 8205.0 5 11675.0 6 14880.5 7 18694.5 8 22653.0 9 24558.0 10 24059.5 11 23026.0 12 25109.0 13 32113.5 14 47222.5 15 65855.5 16 79980.5 17 87553.5 18 88307.5 19 83594.0 20 77090.5 21 71340.5 22 70489.5 23 78896.0 24 96727.0 25 123560.0 26 158237.5 27 195986.0 28 234407.5 29 274587.5 30 312603.5 31 349841.0 32 391922.0 33 436454.5 34 478537.0 35 517896.0 36 558985.5 37 592972.5 38 611201.0 39 622865.5 40 635714.0 41 641456.5 42 638750.5 43 644177.0 44 670545.0 45 680352.0 46 653168.0 47 622542.0 48 595745.0 49 567696.0 50 536702.5 51 501752.5 52 462791.5 53 421914.0 54 383176.5 55 345009.0 56 305959.0 57 266598.5 58 230391.0 59 198325.5 60 165448.0 61 132047.5 62 100778.5 63 75537.0 64 57245.5 65 42881.0 66 31296.5 67 23251.0 68 17507.5 69 12740.5 70 9102.5 71 6518.0 72 4656.0 73 3205.5 74 2183.0 75 1480.0 76 965.5 77 586.0 78 383.0 79 276.5 80 195.0 81 132.5 82 96.5 83 72.5 84 47.5 85 25.0 86 10.5 87 5.5 88 5.5 89 6.0 90 6.0 91 3.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003070676126757511 4 0.0 5 0.053251812568605186 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.0034889303129118E-5 16-17 3.34496310104304E-6 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 9.503541993525211E-4 28-29 2.2764533673381903E-4 30-31 0.0 32-33 0.0 34-35 7.744974294598686E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.0434033898715371E-5 46-47 1.264456424934912E-4 48-49 0.0 50-51 2.1468479799055028E-5 52-53 1.803645615092214E-5 54-55 0.0011636582404112833 56-57 0.00209463325612904 58-59 0.00871522351845643 60-61 0.007963792138821566 62-63 0.00421301422346793 64-65 0.005257757066724364 66-67 0.006911629012078457 68-69 0.003723208428907691 70-71 0.005616144490777198 72-73 0.001077494093536544 74-75 0.0015559296863282032 76-77 0.0013563968039869757 78-79 0.0011574858336709333 80-81 6.668945778886602E-5 82-83 0.0 84-85 0.0 86-87 3.754170041464161E-4 88-89 8.517266245811798E-4 90-91 0.0 92-93 0.0 94-95 1.09008617494575E-4 96-97 3.2260437219253546E-4 98-99 9.51629482299763E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 224.0 20-21 886.0 22-23 1787.0 24-25 2291.0 26-27 4834.0 28-29 11189.0 30-31 28629.0 32-33 38015.0 34-35 52816.0 36-37 82724.0 38-39 100252.0 40-41 99033.0 42-43 115454.0 44-45 138353.0 46-47 139993.0 48-49 128144.0 50-51 115527.0 52-53 108924.0 54-55 117834.0 56-57 124479.0 58-59 125250.0 60-61 124103.0 62-63 121838.0 64-65 138208.0 66-67 152247.0 68-69 149175.0 70-71 164882.0 72-73 125550.0 74-75 127040.0 76-77 134701.0 78-79 141170.0 80-81 143612.0 82-83 134753.0 84-85 132904.0 86-87 137893.0 88-89 145065.0 90-91 149131.0 92-93 144138.0 94-95 151142.0 96-97 228662.0 98-99 1169864.0 100-101 9495132.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.58227312409369 #Duplication Level Percentage of deduplicated Percentage of total 1 88.33448183964414 72.94862305556786 2 7.878272359334355 13.012112794490955 3 2.0050974480188586 4.967565152781499 4 0.7848059232779042 2.5924422842216956 5 0.3720325038079815 1.5361644920255575 6 0.21443573823272027 1.0625154421380698 7 0.124380805632536 0.7190154763498628 8 0.07861840604778439 0.5193989344655223 9 0.04704770706113936 0.3496775934946826 >10 0.15744705852563992 1.9175958394671428 >50 0.0022970780672809045 0.12692947693290516 >100 9.696924736745299E-4 0.14659226924707497 >500 7.092636808116057E-5 0.038440844698892446 >1k 4.2513507987837915E-5 0.06292634411828325 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.68992620208608E-6 1.337985240417216E-5 2 0.0 2.006977860625824E-5 0.0 6.68992620208608E-6 1.337985240417216E-5 3 0.0 2.675970480834432E-5 0.0 1.337985240417216E-5 1.337985240417216E-5 4 0.0 6.020933581877472E-5 0.0 2.006977860625824E-5 1.337985240417216E-5 5 0.0 6.689926202086079E-5 0.0 2.006977860625824E-5 1.337985240417216E-5 6 3.3449631010430395E-5 7.358918822294688E-5 0.0 2.006977860625824E-5 1.337985240417216E-5 7 3.3449631010430395E-5 7.358918822294688E-5 0.0 2.006977860625824E-5 1.337985240417216E-5 8 3.3449631010430395E-5 7.358918822294688E-5 0.0 3.3449631010430395E-5 2.006977860625824E-5 9 3.3449631010430395E-5 1.2041867163754943E-4 0.0 4.013955721251648E-5 2.006977860625824E-5 10-11 4.013955721251648E-5 1.271085978396355E-4 0.0 5.351940961668864E-5 2.006977860625824E-5 12-13 4.682948341460256E-5 1.3379852404172158E-4 0.0 6.689926202086079E-5 2.006977860625824E-5 14-15 4.682948341460256E-5 1.6055822885006592E-4 0.0 6.689926202086079E-5 3.34496310104304E-5 16-17 9.031400372816207E-5 1.6055822885006592E-4 0.0 8.696904062711903E-5 4.013955721251648E-5 18-19 9.365896682920512E-5 1.67248155052152E-4 0.0 1.1707370853650638E-4 4.348452031355952E-5 20-21 9.365896682920512E-5 1.8731793365841024E-4 0.0 1.438334133448507E-4 5.0174446515645595E-5 22-23 1.0034889303129119E-4 2.1407763846675453E-4 0.0 1.6055822885006592E-4 6.020933581877472E-5 24-25 1.1038378233442031E-4 2.2745749087092672E-4 0.0 2.0069778606258238E-4 7.024422512190383E-5 26-27 1.1707370853650638E-4 2.341474170730128E-4 0.0 2.776319373865723E-4 7.358918822294688E-5 28-29 1.2041867163754943E-4 2.341474170730128E-4 0.0 6.054383212887902E-4 7.358918822294688E-5 30-31 1.2041867163754943E-4 2.8097690048761536E-4 0.0 0.0016958962922288211 7.358918822294688E-5 32-33 1.2376363473859246E-4 2.8097690048761536E-4 0.0 0.003910261865119313 7.358918822294688E-5 34-35 1.3045356094067856E-4 3.110815683970027E-4 0.0 0.007004352733584126 7.358918822294688E-5 36-37 1.3379852404172158E-4 3.4787616250847613E-4 0.0 0.012132181167483106 7.358918822294688E-5 38-39 1.3379852404172158E-4 3.5456608871056223E-4 0.0 0.01948775502667675 7.358918822294688E-5 40-41 1.3379852404172158E-4 3.813257935189065E-4 0.0 0.027843472853082262 7.358918822294688E-5 42-43 1.3379852404172158E-4 3.8467075661994957E-4 0.0 0.03529605064220616 7.358918822294688E-5 44-45 1.3714348714276463E-4 4.4488009243872425E-4 0.0 0.04389929573808886 7.358918822294688E-5 46-47 1.4048845024380768E-4 5.017444651564559E-4 0.0 0.05335216146163649 8.027911442503296E-5 48-49 1.4717837644589375E-4 5.017444651564559E-4 0.0 0.06343388024818021 8.027911442503296E-5 50-51 1.5386830264797982E-4 5.652987640762737E-4 0.0 0.0733349710272676 8.027911442503296E-5 52-53 1.6055822885006592E-4 5.753336533794028E-4 0.0 0.08286142593903818 9.031400372816207E-5 54-55 1.6055822885006592E-4 5.820235795814889E-4 0.0 0.0929431447255819 1.0034889303129119E-4 56-57 1.6055822885006592E-4 6.087832843898332E-4 0.0 0.10057635052216213 1.0369385613233424E-4 58-59 1.6055822885006592E-4 6.154732105919193E-4 0.0 0.10724955190874298 1.1038378233442031E-4 60-61 1.67248155052152E-4 6.154732105919193E-4 0.0 0.11379564469748421 1.1707370853650638E-4 62-63 1.67248155052152E-4 6.221631367940054E-4 0.0 0.11999386132371698 1.2376363473859246E-4 64-65 1.67248155052152E-4 7.158221036232106E-4 0.0 0.12620545780235387 1.271085978396355E-4 66-67 1.8062800745632414E-4 7.292019560273827E-4 0.0 0.13243377909649603 1.271085978396355E-4 68-69 1.8731793365841024E-4 7.49271734633641E-4 0.0 0.13882600358258929 1.271085978396355E-4 70-71 1.906628967594533E-4 7.65996550138856E-4 0.0 0.14466965412011146 1.271085978396355E-4 72-73 2.2076756466884063E-4 7.693415132398991E-4 0.0 0.1494295366128957 1.4048845024380768E-4 74-75 2.2076756466884063E-4 7.827213656440713E-4 0.0 0.15321603484327645 1.4048845024380768E-4 76-77 2.2411252776988368E-4 8.094810704524156E-4 0.0 0.15663124216944138 1.4048845024380768E-4 78-79 2.3080245397196975E-4 8.228609228565878E-4 0.0 0.15959822444006655 1.4048845024380768E-4 80-81 2.341474170730128E-4 8.228609228565878E-4 0.0 0.1609930740532015 1.4717837644589375E-4 82-83 2.341474170730128E-4 8.262058859576308E-4 0.0 0.16150485340766108 1.5386830264797982E-4 84-85 2.341474170730128E-4 8.295508490586738E-4 0.0 0.16203670254072694 1.5386830264797982E-4 86-87 2.341474170730128E-4 8.696904062711903E-4 0.0 0.16222402047438533 1.5386830264797982E-4 88-89 2.4083734327509887E-4 9.365896682920512E-4 0.0 0.16226416003159785 1.6055822885006592E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25000 0.0 51.760532 1 GTATCAA 45750 0.0 35.98229 1 CTTATAC 14365 0.0 30.155611 1 ATCAACG 55880 0.0 29.85613 3 TCAACGC 55940 0.0 29.83835 4 CAACGCA 57175 0.0 29.193832 5 TATCAAC 57720 0.0 29.059498 2 AACGCAG 58985 0.0 28.351866 6 TGGTATC 11115 0.0 25.50893 2 GTGGTAT 11510 0.0 25.152115 1 ACGCAGA 67360 0.0 24.782549 7 CGCAGAG 68010 0.0 24.59581 8 TATACAC 22485 0.0 22.545975 3 GCAGAGT 77950 0.0 21.415682 9 TTATACA 22630 0.0 20.310204 2 GAGTACT 47515 0.0 20.189465 12-13 CAGAGTA 77545 0.0 19.34346 10-11 ACATCTC 23665 0.0 18.904552 8 ACACATC 23820 0.0 18.745764 6 GTACTTT 52490 0.0 18.138493 14-15 >>END_MODULE