##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139844_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6069472 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.762602908457275 31.0 31.0 34.0 30.0 34.0 2 31.936270733269716 31.0 31.0 34.0 30.0 34.0 3 31.959918095017162 31.0 31.0 34.0 30.0 34.0 4 35.68867473150877 37.0 35.0 37.0 33.0 37.0 5 35.49700188088848 37.0 35.0 37.0 33.0 37.0 6 35.5058098958196 37.0 35.0 37.0 33.0 37.0 7 35.396534657380414 37.0 35.0 37.0 33.0 37.0 8 35.380484496839266 37.0 35.0 37.0 33.0 37.0 9 36.90568981947688 39.0 37.0 39.0 33.0 39.0 10-11 36.792134142805175 39.0 37.0 39.0 32.0 39.0 12-13 36.73615736261738 39.0 35.0 39.0 32.0 39.0 14-15 37.82944974455768 40.0 37.0 41.0 32.0 41.0 16-17 37.814278490781405 40.0 37.0 41.0 32.0 41.0 18-19 37.860968878347244 40.0 37.0 41.0 32.5 41.0 20-21 37.84449625102157 40.0 37.0 41.0 32.0 41.0 22-23 37.778060509315495 39.5 37.0 41.0 32.0 41.0 24-25 37.69182628614537 39.0 37.0 41.0 32.0 41.0 26-27 37.4987796688786 39.0 36.0 41.0 32.0 41.0 28-29 37.39259773606119 39.0 36.0 41.0 32.0 41.0 30-31 37.24191787661577 39.0 36.0 40.0 31.0 41.0 32-33 37.4040735064864 39.0 36.0 40.5 32.0 41.0 34-35 37.360524517496884 39.0 36.0 41.0 31.5 41.0 36-37 37.27340775843428 39.0 36.0 41.0 31.0 41.0 38-39 37.169795973395125 39.0 36.0 40.5 31.0 41.0 40-41 37.076517294618995 39.0 36.0 40.0 31.0 41.0 42-43 37.04034220413901 39.0 35.5 40.0 31.0 41.0 44-45 37.073001455213614 39.0 35.5 40.0 31.0 41.0 46-47 37.187735371509774 39.0 36.0 41.0 31.0 41.0 48-49 37.14048626812442 39.0 36.0 41.0 31.0 41.0 50-51 37.04458122757514 39.0 36.0 40.5 31.0 41.0 52-53 36.961567421886144 39.0 35.0 40.0 31.0 41.0 54-55 36.85215253927015 39.0 35.0 40.0 30.0 41.0 56-57 36.739689931928865 39.0 35.0 40.0 30.0 41.0 58-59 36.61702396393139 38.5 35.0 40.0 30.0 41.0 60-61 36.42668799113876 38.0 35.0 40.0 30.0 41.0 62-63 36.23484773248572 38.0 34.0 40.0 29.0 41.0 64-65 36.062736933012026 38.0 34.0 40.0 29.0 41.0 66-67 35.84041888584575 37.5 34.0 40.0 29.0 41.0 68-69 35.57960381378608 37.0 34.0 40.0 29.0 41.0 70-71 35.30563890103329 36.5 34.0 39.0 29.0 41.0 72-73 35.0102412724359 36.0 33.5 39.0 28.0 40.0 74-75 34.6673494696579 36.0 33.0 39.0 28.0 40.0 76-77 33.602359482513876 35.0 31.5 37.0 27.0 39.0 78-79 34.015568828418196 35.0 32.5 37.0 28.0 39.0 80-81 33.88360484432165 35.0 33.0 37.0 28.0 39.0 82-83 33.616259199193614 35.0 32.5 36.0 28.0 38.5 84-85 33.36979151987938 35.0 32.0 36.0 28.0 37.0 86-87 33.13599438406233 35.0 32.0 35.5 28.0 37.0 88-89 32.90751346555293 34.0 32.0 35.0 27.0 36.5 90-91 32.75240390154856 34.0 32.0 35.0 27.0 36.0 92-93 32.66361756985198 34.0 32.0 35.0 27.0 36.0 94-95 32.604588026001956 34.0 32.0 35.0 27.0 36.0 96-97 32.60282419442576 34.0 32.0 35.0 27.5 35.0 98-99 32.719392068202055 34.0 32.0 35.0 29.0 35.0 100-101 32.08246347933972 33.5 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 9.0 20 61.0 21 351.0 22 1544.0 23 4983.0 24 12749.0 25 26616.0 26 47050.0 27 73747.0 28 105143.0 29 139993.0 30 177680.0 31 219725.0 32 269253.0 33 334364.0 34 427024.0 35 551057.0 36 754951.0 37 1092219.0 38 1237424.0 39 574911.0 40 18617.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.59145912386763 23.498555310668756 16.068352579656448 23.841632985807166 2 13.14516489123932 23.743669515292105 41.97002822263008 21.141137370838507 3 16.113279705384585 29.05796418535253 32.50345334816603 22.325302761096847 4 11.32642367020124 20.55121443038446 41.00841737278257 27.113944526631727 5 11.508169328101246 39.388918737728545 37.17007627188597 11.93283566228424 6 26.651395706249243 41.38552743961913 19.9050922386659 12.057984615465728 7 23.44164368828129 34.11814075425342 25.76054391551687 16.679671641948428 8 22.545140664624533 38.53036969278382 22.629068887705554 16.29542075488609 9 24.681076047471677 16.833128153486825 22.72111972837176 35.764676070669736 10-11 22.50743557264948 28.13488553864323 30.765007236214288 18.592671652493 12-13 23.463828484586468 25.892861850256498 30.607884837429022 20.03542482772801 14-15 20.69875270863759 27.25384514501426 28.299768085263434 23.74763406108472 16-17 20.040664163208923 30.194405707778206 29.01949296413263 20.74543716488024 18-19 20.04858266376404 29.43955868152117 30.731076247613252 19.780782407101537 20-21 20.983876130057013 28.660869823116496 30.459041959629158 19.896212087197334 22-23 20.657020833973615 28.58415280559888 30.313471572819044 20.445354787608462 24-25 20.402982081580376 28.753229213295516 30.38780066826572 20.455988036858386 26-27 20.415717495247993 28.909344415482625 30.23040630213261 20.444531787136768 28-29 20.305326680470138 29.014022305377512 30.270684327978632 20.40996668617372 30-31 20.69064645240381 28.825701230581647 30.160388931425185 20.323263385589353 32-33 20.497136735308118 28.999968841528013 30.028488456117604 20.47440596704627 34-35 20.525485613870288 29.10793259650115 30.12002659696817 20.246555192660395 36-37 20.54243380527894 29.025169530439744 30.055511903639108 20.37688476064221 38-39 20.349332962867273 29.114237747944237 30.105529686756267 20.43089960243222 40-41 20.62238313494617 28.974089798180746 29.96395711125064 20.439569955622446 42-43 20.530585325667218 29.079380405500356 29.70853937825431 20.68149489057812 44-45 20.584934487434587 29.22736613838039 29.536820210169157 20.650879164015866 46-47 20.635408454711033 29.148219830323807 29.31583487765323 20.90053683731193 48-49 20.58633945552834 29.297985618139165 29.33095301661034 20.784721909722155 50-51 20.626802236749885 29.38482183335823 29.148779013971275 20.839596915920605 52-53 20.687445878005274 29.27463578680318 29.097247399645443 20.9406709355461 54-55 20.690612340629635 29.226916938426236 29.12961295790979 20.952857763034345 56-57 20.726154415944425 29.29205297650741 29.02969952746134 20.95209308008683 58-59 20.666790419921448 29.364817337568223 29.085696814035643 20.882695428474683 60-61 20.684967140852436 29.153284525263157 29.167954547130186 20.993793786754217 62-63 20.839024601203022 29.194702021224522 29.20286338546018 20.763409992112276 64-65 20.489934202715137 29.198210955341867 29.17336096079415 21.138493881148847 66-67 20.67062091963759 29.30351282577645 28.911878498469807 21.113987756116153 68-69 20.61518119442933 29.550118235942236 28.976240253284963 20.85846031634347 70-71 20.62128090587729 29.26232864711695 29.074950681372126 21.041439765633637 72-73 20.63238749129678 29.31459407447538 28.787657431453056 21.265361002774785 74-75 20.581233548204732 29.332232476792118 28.74842171881187 21.33811225619128 76-77 20.663157853672608 29.06141905861343 28.907589109345682 21.367833978368285 78-79 20.72561754245954 29.029134186291046 28.890356630054388 21.354891641195028 80-81 20.980913943644325 29.01321347387038 28.65532882706513 21.350543755420166 82-83 20.988378844938822 29.256900804638587 28.761957459028814 20.992762891393774 84-85 20.822315020650052 28.97456086565447 28.655727586793688 21.547396526901792 86-87 20.623586360555237 29.33970494982879 28.752217089225873 21.28449160039011 88-89 21.056658559013467 28.91964645682949 28.742027454899578 21.28166752925747 90-91 21.117674062593395 29.140738432614523 28.82120269077969 20.920384814012394 92-93 20.810133791209292 29.043078591155265 28.855044413521863 21.291743204113583 94-95 20.933762992446223 28.784662835376107 28.95694373827865 21.324630433899017 96-97 20.763957923672262 29.180815676336575 29.11859127867157 20.9366351213196 98-99 20.948617189047482 29.5727714343545 29.265764239689396 20.21284713690862 100-101 23.979827510954724 36.84316344888113 30.37706497991801 8.799944060246139 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2129.0 1 1754.5 2 2120.0 3 2986.5 4 3862.0 5 5650.0 6 7154.5 7 8599.5 8 9700.5 9 9780.5 10 9187.5 11 8600.0 12 9451.0 13 12205.5 14 19160.5 15 28957.0 16 36397.0 17 39997.0 18 40770.5 19 40157.0 20 39399.5 21 39568.0 22 41471.5 23 47005.0 24 56918.0 25 70196.5 26 86937.5 27 104971.5 28 122830.0 29 140747.0 30 157652.0 31 173501.5 32 189322.5 33 205958.0 34 221913.5 35 235879.5 36 249959.5 37 260992.0 38 266074.5 39 268135.5 40 269477.5 41 269416.5 42 266896.0 43 263989.5 44 260503.0 45 255397.5 46 248367.0 47 240062.0 48 230704.5 49 218310.0 50 205124.0 51 191219.5 52 174367.5 53 158085.5 54 143166.0 55 128535.5 56 114917.0 57 101593.0 58 88281.0 59 75200.5 60 62150.5 61 49459.5 62 37978.0 63 28748.0 64 21741.5 65 16629.5 66 12779.0 67 9643.0 68 7284.5 69 5158.5 70 3448.0 71 2497.0 72 1780.0 73 1229.0 74 848.5 75 574.5 76 385.5 77 267.5 78 192.0 79 139.5 80 100.0 81 74.5 82 66.0 83 51.0 84 33.5 85 23.5 86 17.5 87 14.0 88 10.0 89 6.0 90 3.5 91 3.0 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.6475897738715988E-5 2 0.003772980582165961 3 0.0 4 1.6475897738715988E-5 5 1.6475897738715988E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 3.789456479904677E-4 20-21 5.354959681272799E-4 22-23 2.6366521175653516E-4 24-25 1.7308709907670397E-4 26-27 0.002622411142113655 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.03249335555218501 38-39 0.016369692943017784 40-41 0.021635852444506887 42-43 0.009930888909832163 44-45 0.003930495307483168 46-47 0.0050076419251378615 48-49 0.009150350394394331 50-51 0.006852560505995945 52-53 0.0109299715902509 54-55 0.0036336265712796872 56-57 0.016854652783948952 58-59 0.01336206427378119 60-61 0.013061418912405323 62-63 0.005022861674503447 64-65 0.006739840416847509 66-67 3.6306826438945014E-4 68-69 5.473625881054725E-4 70-71 0.0010704312454437245 72-73 1.0245097567137661E-4 74-75 0.0028888855635529885 76-77 0.003890407330919102 78-79 0.003094080606259935 80-81 6.748798088043731E-4 82-83 0.0035978884712140136 84-85 0.0049292983312637035 86-87 0.0015683803530710375 88-89 0.07876167473002871 90-91 9.759628677074001E-4 92-93 0.0 94-95 4.7377647226038756E-4 96-97 0.011709039609678137 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 198.0 20-21 689.0 22-23 1377.0 24-25 3161.0 26-27 3675.0 28-29 5689.0 30-31 16282.0 32-33 21189.0 34-35 30169.0 36-37 45339.0 38-39 49853.0 40-41 52514.0 42-43 59813.0 44-45 69942.0 46-47 70575.0 48-49 64050.0 50-51 58824.0 52-53 52801.0 54-55 57827.0 56-57 61244.0 58-59 37149.0 60-61 65495.0 62-63 62341.0 64-65 66296.0 66-67 70830.0 68-69 72691.0 70-71 71952.0 72-73 68864.0 74-75 69049.0 76-77 70641.0 78-79 75953.0 80-81 77688.0 82-83 74354.0 84-85 74098.0 86-87 79201.0 88-89 84258.0 90-91 91460.0 92-93 95195.0 94-95 111034.0 96-97 146156.0 98-99 500338.0 100-101 3279218.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.5240028660743 #Duplication Level Percentage of deduplicated Percentage of total 1 92.63963898698678 82.93471306183092 2 5.447756004030273 9.754098482369592 3 1.1429520113503393 3.069649174197395 4 0.3785981509772071 1.3557448781269568 5 0.15910716465491445 0.7121955132289758 6 0.08340331912296645 0.4479959388122734 7 0.0453183782449318 0.28399578367195794 8 0.02838895802613532 0.2033194527757281 9 0.017283907946372683 0.1392592162075229 >10 0.054762941589482333 0.7626998708695246 >50 0.0017661708670130738 0.10143235098957296 >100 9.473120604284081E-4 0.1892375991607942 >500 7.669414318021364E-5 0.045658677758732086 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6475897738715988E-5 2 0.0 3.2951795477431976E-5 0.0 0.0 1.6475897738715988E-5 3 0.0 3.2951795477431976E-5 0.0 0.0 1.6475897738715988E-5 4 0.0 6.590359095486395E-5 0.0 1.6475897738715988E-5 1.6475897738715988E-5 5 0.0 6.590359095486395E-5 0.0 4.942769321614796E-5 1.6475897738715988E-5 6 0.0 6.590359095486395E-5 0.0 4.942769321614796E-5 3.2951795477431976E-5 7 0.0 6.590359095486395E-5 0.0 6.590359095486395E-5 3.2951795477431976E-5 8 0.0 6.590359095486395E-5 0.0 6.590359095486395E-5 3.2951795477431976E-5 9 0.0 1.8123487512587585E-4 0.0 9.885538643229593E-5 3.2951795477431976E-5 10-11 0.0 1.8123487512587585E-4 0.0 1.318071819097279E-4 3.2951795477431976E-5 12-13 0.0 1.8123487512587585E-4 0.0 1.4828307964844388E-4 4.118974434678997E-5 14-15 0.0 2.389005172113818E-4 0.0 1.6475897738715985E-4 7.414153982422195E-5 16-17 0.0 2.471384660807398E-4 0.0 2.0594872173394985E-4 8.237948869357994E-5 18-19 0.0 2.471384660807398E-4 0.0 2.306625683420238E-4 8.237948869357994E-5 20-21 0.0 2.471384660807398E-4 0.0 2.965661592968878E-4 8.237948869357994E-5 22-23 0.0 2.800902615581718E-4 0.0 4.778010344227636E-4 8.237948869357994E-5 24-25 0.0 3.2951795477431976E-4 0.0 0.001194502586056909 8.237948869357994E-5 26-27 0.0 3.2951795477431976E-4 0.0 0.0031386585192253952 8.237948869357994E-5 28-29 0.0 3.2951795477431976E-4 0.0 0.015166063868488067 9.061743756293793E-5 30-31 0.0 3.954215457291837E-4 0.0 0.023181588118373394 9.885538643229593E-5 32-33 0.0 4.1189744346789965E-4 0.0 0.03196324161310902 9.885538643229593E-5 34-35 0.0 4.613251366840476E-4 0.0 0.04288676181387771 1.318071819097279E-4 36-37 0.0 5.107528299001956E-4 0.0 0.057336124130731636 1.318071819097279E-4 38-39 0.0 5.272287276389116E-4 0.0 0.08602066209383617 1.6475897738715988E-4 40-41 0.0 5.601805231163436E-4 0.0 0.14368630417934214 1.6475897738715988E-4 42-43 0.0 5.684184719857016E-4 0.0 0.16731274153666087 1.6475897738715988E-4 44-45 0.0 5.848943697244175E-4 0.0 0.20367504784600704 1.6475897738715988E-4 46-47 0.0 5.931323185937755E-4 0.0 0.245647397335386 1.7299692625651785E-4 48-49 0.0 5.931323185937755E-4 0.0 0.2808975805473689 1.9771077286459185E-4 50-51 0.0 6.425600118099235E-4 0.0 0.31517568579276745 1.9771077286459185E-4 52-53 0.0 6.425600118099235E-4 0.0 0.35820249273742427 2.0594872173394985E-4 54-55 0.0 6.507979606792815E-4 0.0 0.4427567999325147 2.1418667060330783E-4 56-57 0.0 6.755118072873555E-4 0.0 0.5334730928818849 2.1418667060330783E-4 58-59 0.0 7.084636027647874E-4 0.0 0.6105967701968145 2.1418667060330783E-4 60-61 0.0 7.084636027647874E-4 0.0 1.085563950208519 2.1418667060330783E-4 62-63 0.0 7.084636027647874E-4 0.0 1.0970806027278814 2.1418667060330783E-4 64-65 0.0 7.578912959809354E-4 0.0 1.1086054931961131 2.1418667060330783E-4 66-67 0.0 7.661292448502934E-4 0.0 1.1172635774578086 2.1418667060330783E-4 68-69 0.0 8.155569380664414E-4 0.0 1.125929899668373 2.1418667060330783E-4 70-71 0.0 8.320328358051573E-4 0.0 1.1342667039241634 2.1418667060330783E-4 72-73 0.0 8.402707846745153E-4 0.0 1.1405357830137448 2.471384660807398E-4 74-75 0.0 8.485087335438733E-4 0.0 1.146294109273426 2.471384660807398E-4 76-77 0.0 9.308882222374532E-4 0.0 1.151352209879212 2.553764149500978E-4 78-79 0.0 9.556020688455272E-4 0.0 1.1560396027858766 2.636143638194558E-4 80-81 0.0 9.556020688455272E-4 0.0 1.1585027494978146 2.718523126888138E-4 82-83 0.0 9.556020688455272E-4 0.0 1.1599279146522137 2.800902615581718E-4 84-85 0.0 9.720779665842432E-4 0.0 1.1612542244201802 2.883282104275298E-4 86-87 0.0 9.720779665842432E-4 0.0 1.1616743598125174 2.9656615929688775E-4 88-89 0.0 9.720779665842432E-4 0.0 1.1617649772500804 2.9656615929688775E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7565 0.0 46.6561 1 GTATCAA 13525 0.0 33.757412 1 ACCGAGG 5395 0.0 28.912737 92-93 GACCGAG 5490 0.0 28.196117 90-91 AGACCGA 5540 0.0 27.475948 90-91 GAGACCG 5625 0.0 27.340815 88-89 CGAGACC 5720 0.0 27.105764 88-89 ATCAACG 16785 0.0 26.511288 3 TCAACGC 16895 0.0 26.338678 4 ACGAGAC 6145 0.0 26.074743 86-87 CAACGCA 17215 0.0 25.825106 5 AACGCAG 17700 0.0 25.187431 6 TATCAAC 17920 0.0 25.017452 2 GCCCACG 6275 0.0 24.933935 82-83 CACGAGA 6335 0.0 24.665216 86-87 CCCACGA 6275 0.0 24.438377 84-85 CCACGAG 6540 0.0 24.179464 84-85 CGAGCCC 6445 0.0 23.21105 80-81 CCGAGCC 6610 0.0 23.184372 78-79 CTCCGAG 6645 0.0 22.795261 76-77 >>END_MODULE