##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139842_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10344532 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.420382961742494 30.0 18.0 32.0 18.0 33.0 2 27.916009250104306 30.0 25.0 32.0 18.0 33.0 3 27.57433096054998 29.0 25.0 31.0 18.0 33.0 4 30.81635602267942 32.0 30.0 33.0 27.0 33.0 5 31.3144004001341 33.0 32.0 33.0 28.0 33.0 6 35.157989070941056 37.0 35.0 38.0 29.0 38.0 7 35.64347173946584 38.0 36.0 38.0 31.0 38.0 8 36.122257149960966 38.0 37.0 38.0 33.0 38.0 9 36.60211423774415 38.0 38.0 38.0 34.0 38.0 10-11 36.69495642722165 38.0 38.0 38.0 34.0 38.0 12-13 36.79310103154014 38.0 38.0 38.0 34.5 38.0 14-15 36.80021184138634 38.0 38.0 38.0 35.0 38.0 16-17 36.820376794232935 38.0 38.0 38.0 35.0 38.0 18-19 36.83713666311826 38.0 38.0 38.0 35.0 38.0 20-21 36.87831271058511 38.0 38.0 38.0 35.0 38.0 22-23 36.8666745267834 38.0 38.0 38.0 35.0 38.0 24-25 36.87257158032227 38.0 38.0 38.0 35.0 38.0 26-27 36.82760335291162 38.0 38.0 38.0 35.0 38.0 28-29 36.729056406291505 38.0 38.0 38.0 34.5 38.0 30-31 36.765340346023606 38.0 38.0 38.0 35.0 38.0 32-33 36.74765093801082 38.0 38.0 38.0 35.0 38.0 34-35 36.710884969689864 38.0 38.0 38.0 34.5 38.0 36-37 36.682369452242256 38.0 38.0 38.0 34.0 38.0 38-39 36.633062716151585 38.0 38.0 38.0 34.0 38.0 40-41 36.70887339132742 38.0 38.0 38.0 34.0 38.0 42-43 36.68887992369821 38.0 38.0 38.0 34.0 38.0 44-45 36.620260502844545 38.0 38.0 38.0 34.0 38.0 46-47 36.496518479442365 38.0 38.0 38.0 34.0 38.0 48-49 36.442209845309414 38.0 38.0 38.0 34.0 38.0 50-51 36.45204507106983 38.0 38.0 38.0 34.0 38.0 52-53 36.461282500263465 38.0 38.0 38.0 34.0 38.0 54-55 36.388578076354335 38.0 38.0 38.0 34.0 38.0 56-57 36.40081118575178 38.0 38.0 38.0 34.0 38.0 58-59 36.340436788859236 38.0 38.0 38.0 33.5 38.0 60-61 36.35061981013982 38.0 38.0 38.0 34.0 38.0 62-63 36.36668998719051 38.0 38.0 38.0 34.0 38.0 64-65 36.35772290410729 38.0 38.0 38.0 34.0 38.0 66-67 36.33059841635442 38.0 38.0 38.0 33.5 38.0 68-69 36.30225903588927 38.0 38.0 38.0 33.0 38.0 70-71 36.30060945219847 38.0 38.0 38.0 33.0 38.0 72-73 36.29248908569829 38.0 38.0 38.0 33.0 38.0 74-75 36.26809764913345 38.0 38.0 38.0 33.0 38.0 76-77 36.268534062202605 38.0 38.0 38.0 33.0 38.0 78-79 36.26530911638467 38.0 37.5 38.0 33.0 38.0 80-81 36.279518068817026 38.0 37.5 38.0 33.0 38.0 82-83 36.255843018300126 38.0 37.0 38.0 33.0 38.0 84-85 36.235384804845594 38.0 37.0 38.0 33.0 38.0 86-87 36.24359485337136 38.0 37.0 38.0 33.0 38.0 88-89 36.25549782737016 38.0 37.0 38.0 33.0 38.0 90-91 36.20942932480148 38.0 37.0 38.0 33.0 38.0 92-93 36.234568390761595 38.0 37.0 38.0 33.0 38.0 94-95 36.19715512207807 38.0 37.0 38.0 33.0 38.0 96-97 36.23046412370998 38.0 37.0 38.0 33.0 38.0 98-99 36.27533805483238 38.0 37.0 38.0 33.0 38.0 100-101 35.714128039969935 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 58.0 19 222.0 20 489.0 21 1103.0 22 2867.0 23 6884.0 24 15210.0 25 28426.0 26 48194.0 27 73894.0 28 105561.0 29 142167.0 30 182516.0 31 230532.0 32 290692.0 33 384370.0 34 548269.0 35 913734.0 36 2161539.0 37 5207802.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.814603502604086 20.402788642347474 13.430428752117543 21.3521791029309 2 13.85424686201367 21.331955858418727 41.97200027995466 22.841796999612935 3 19.208070505267905 27.625986366517115 30.120183300704177 23.045759827510807 4 11.930167551320833 19.608542948100506 40.1454700898987 28.31581941067996 5 12.639141126390541 39.31982627705571 35.252525174371904 12.788507422181844 6 27.41873677803887 39.200932434642766 19.757955217307078 13.622375570011286 7 24.775736265809925 34.1705775183884 23.18314812011337 17.87053809568831 8 22.92174261725905 37.62715413321743 22.15858581132525 17.292517438198267 9 24.591416992088188 17.920801057022203 21.89378891186184 35.593993039027765 10-11 23.002084579563387 27.84076167003012 29.256538623496937 19.90061512690956 12-13 24.222415281812655 25.277455761169282 29.37037654289242 21.129752414125647 14-15 21.527513279479436 26.700855099099698 27.2800983166759 24.491533304744962 16-17 20.589075465182958 30.213638471029913 27.9241438858713 21.27314217791583 18-19 20.449939156261493 28.73746245842731 30.11782940011206 20.69476898519914 20-21 21.51300939165314 27.67914718903668 30.18592427079093 20.621919148519247 22-23 20.917818990264532 28.255919816859272 29.953876441107436 20.872384751768763 24-25 20.832984240570834 28.3470059250449 30.345553731383042 20.47445610300123 26-27 20.808506337732247 28.50124104755729 30.27581091203093 20.414441702679532 28-29 20.06458882966999 28.158052403725858 30.71319703289258 21.064161733711572 30-31 20.940627538100053 27.77715586312101 30.974907011110613 20.30730958766832 32-33 20.418854751437877 28.505485866248513 30.49542392126478 20.58023546104883 34-35 20.361842995979824 28.580238592313535 31.023141962212268 20.034776449494377 36-37 20.834784719880684 28.179592981813624 30.412737652014094 20.572884646291595 38-39 20.386194650982134 28.017685209085425 30.74529504589242 20.850825094040026 40-41 20.687408579334694 27.86801917015072 30.811056616382277 20.63351563413231 42-43 20.907467601312163 27.69179649009018 30.720796278048716 20.679939630548937 44-45 20.573764711835086 28.220921287979223 30.445698904774854 20.75961509541084 46-47 20.985074325283787 27.796872773311733 29.81604480205317 21.40200809935131 48-49 20.878078406283922 27.814240790045957 30.043758517986518 21.263922285683602 50-51 20.631697200361476 28.159016810704866 30.106953730873638 21.102332258060017 52-53 20.689863538099743 28.40835705268277 30.281288722636003 20.620490686581483 54-55 20.701161823007112 28.52665115821893 29.77352511385603 20.998661904917924 56-57 21.07058734532103 29.055620720119734 29.061885956636115 20.81190597792312 58-59 20.401827511154348 29.669114144466214 29.720455847865818 20.208602496513624 60-61 20.869321081828144 30.187262141469905 28.78793261278027 20.155484163921674 62-63 20.377302704478314 30.420526942384953 28.835077628669755 20.367092724466982 64-65 20.339181752140448 30.25057635370362 28.934404232637124 20.475837661518803 66-67 20.517064509306238 29.983189154639277 28.9082611793562 20.591485156698287 68-69 20.69156250534847 29.60729249407214 29.088469104287952 20.61267589629144 70-71 20.752883192064957 28.899068291615706 29.387036652962312 20.961011863357022 72-73 20.868194577374886 28.656256490137988 29.58929283744484 20.886256095042285 74-75 20.846519361820324 28.722209009332367 29.419228152341425 21.012043476505884 76-77 20.76512496693512 28.760805954051023 29.388381023410375 21.085688055603484 78-79 20.850628841282127 28.829154057406864 29.30492207434571 21.01529502696529 80-81 20.820035875517043 28.783264844035617 29.326861694853633 21.069837585593707 82-83 20.975806874772697 28.705731429953445 29.47634335384157 20.842118341432286 84-85 21.215801636645747 28.663341030047874 29.242427268239474 20.878430065066908 86-87 20.78044759366439 28.845065760412037 29.342331939960896 21.032154705962675 88-89 21.009922866864354 28.785468622057575 29.27793517318684 20.92667333789123 90-91 21.07767059407583 28.782523667473026 29.29976723317601 20.840038505275142 92-93 21.069282123809018 28.795589576819715 29.23773879113597 20.897389508235303 94-95 20.92731238596994 28.971043463838097 29.17796340194626 20.923680748245697 96-97 20.911554691722447 28.970353230366275 29.279722124059372 20.83836995385191 98-99 21.119229872792445 29.50046932469076 29.270003648259618 20.11029715425718 100-101 21.696217088229584 32.139356484432156 26.761779862753404 19.402646564584856 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3321.0 1 2982.5 2 3598.0 3 4924.5 4 6358.0 5 9428.5 6 12429.5 7 15311.0 8 19045.0 9 21169.5 10 19829.5 11 17667.5 12 18276.0 13 22629.0 14 31899.5 15 43047.0 16 52495.0 17 59377.0 18 60723.5 19 56639.0 20 50755.0 21 45264.5 22 43541.0 23 48172.5 24 58593.5 25 74528.0 26 97259.0 27 123850.5 28 149821.5 29 176500.0 30 202114.0 31 226617.5 32 256839.5 33 291578.0 34 325476.0 35 356530.5 36 386068.5 37 411604.0 38 427265.0 39 437294.0 40 449343.5 41 455659.0 42 455183.0 43 465253.5 44 512576.0 45 541507.0 46 516889.0 47 486458.5 48 444971.5 49 403991.5 50 377119.5 51 348054.5 52 315702.0 53 283637.5 54 251985.5 55 220022.0 56 190650.5 57 163425.5 58 138229.5 59 117114.5 60 95379.5 61 72257.5 62 51520.5 63 36919.5 64 27566.5 65 19942.5 66 13873.0 67 9915.0 68 7116.5 69 4865.0 70 3338.5 71 2361.5 72 1702.0 73 1210.0 74 836.5 75 552.5 76 361.5 77 215.0 78 149.5 79 110.0 80 80.0 81 61.5 82 47.5 83 35.5 84 24.0 85 16.0 86 11.5 87 9.0 88 6.5 89 4.0 90 5.0 91 5.5 92 4.5 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.04688467298472275 6 0.0 7 0.0023007324062606217 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.8026736979598086E-5 28-29 4.83796939007091E-6 30-31 1.4531971694044257E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 3.0177856213379174E-5 46-47 5.07688072792722E-6 48-49 0.0 50-51 0.0 52-53 8.171242171936987E-4 54-55 1.6251079386208267E-4 56-57 0.003048002768452844 58-59 0.007705188312778887 60-61 0.003278244318520452 62-63 0.005652602445689042 64-65 0.006521079238066371 66-67 0.0050741293741238674 68-69 0.0038998474289905116 70-71 0.005445029609695498 72-73 0.0033749018341266853 74-75 0.0028573872782497595 76-77 0.0024137145385349818 78-79 6.504567329781682E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 4.9184336190676855E-5 88-89 6.210797060777556E-6 90-91 2.3227661910457613E-4 92-93 0.0 94-95 8.982841425451175E-5 96-97 1.2992140664347915E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 173.0 20-21 589.0 22-23 1181.0 24-25 1848.0 26-27 3938.0 28-29 9199.0 30-31 22993.0 32-33 29241.0 34-35 38815.0 36-37 58784.0 38-39 70711.0 40-41 67548.0 42-43 76591.0 44-45 90736.0 46-47 91490.0 48-49 83348.0 50-51 73653.0 52-53 68249.0 54-55 71591.0 56-57 74824.0 58-59 79947.0 60-61 89460.0 62-63 85202.0 64-65 105589.0 66-67 114342.0 68-69 103155.0 70-71 131066.0 72-73 73037.0 74-75 73373.0 76-77 78109.0 78-79 81603.0 80-81 83929.0 82-83 78719.0 84-85 78802.0 86-87 81236.0 88-89 85060.0 90-91 87558.0 92-93 84238.0 94-95 90601.0 96-97 143279.0 98-99 812787.0 100-101 6767938.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.81282004251827 #Duplication Level Percentage of deduplicated Percentage of total 1 89.40988973392288 74.93694998290678 2 7.160965794237553 12.003614748861217 3 1.882645641593555 4.7336952108813595 4 0.7216472991400626 2.4193318086798166 5 0.31609722632197423 1.3246499972831398 6 0.1754489693355787 0.8822923736140896 7 0.10292918038240355 0.6038749410760001 8 0.061117953766187845 0.4097974448297962 9 0.03992964959085789 0.30119548819674463 >10 0.12380086795606604 1.5928254221511697 >50 0.003399247324870985 0.19469757310874994 >100 0.001809698043371383 0.29673904624910685 >500 1.7929065943838478E-4 0.12028156739534673 >1k 1.3944772520713567E-4 0.1800543947665611 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 9.66694288344799E-6 0.0 3 0.0 9.66694288344799E-6 0.0 9.66694288344799E-6 0.0 4 0.0 9.66694288344799E-6 0.0 9.66694288344799E-6 0.0 5 0.0 9.66694288344799E-6 0.0 2.900082865034397E-5 0.0 6 0.0 9.66694288344799E-6 0.0 2.900082865034397E-5 0.0 7 0.0 9.66694288344799E-6 0.0 2.900082865034397E-5 0.0 8 0.0 9.66694288344799E-6 0.0 2.900082865034397E-5 9.66694288344799E-6 9 0.0 9.66694288344799E-6 0.0 9.66694288344799E-5 9.66694288344799E-6 10-11 9.66694288344799E-6 9.66694288344799E-6 0.0 1.0633637171792789E-4 9.66694288344799E-6 12-13 9.66694288344799E-6 9.66694288344799E-6 0.0 1.2567025748482386E-4 9.66694288344799E-6 14-15 9.66694288344799E-6 2.4167357208619977E-5 0.0 1.3533720036827186E-4 2.4167357208619977E-5 16-17 9.66694288344799E-6 3.866777153379196E-5 0.0 1.3533720036827186E-4 3.866777153379196E-5 18-19 1.933388576689598E-5 3.866777153379196E-5 0.0 1.740049719020638E-4 3.866777153379196E-5 20-21 1.933388576689598E-5 3.866777153379196E-5 0.0 2.1267274343585578E-4 3.866777153379196E-5 22-23 1.933388576689598E-5 3.866777153379196E-5 0.0 2.3684010064447576E-4 5.3168185858963944E-5 24-25 1.933388576689598E-5 3.866777153379196E-5 0.0 2.610074578530957E-4 6.766860018413593E-5 26-27 1.933388576689598E-5 4.350124297551596E-5 0.0 3.093421722703357E-4 6.766860018413593E-5 28-29 1.933388576689598E-5 8.216901450930792E-5 0.0 7.395211305837712E-4 6.766860018413593E-5 30-31 1.933388576689598E-5 1.2083678604309987E-4 0.0 0.0017062154189285703 7.250207162585992E-5 32-33 1.933388576689598E-5 1.2567025748482386E-4 0.0 0.003707272595802304 7.733554306758392E-5 34-35 1.933388576689598E-5 1.4500414325171985E-4 0.0 0.006414016603167741 8.70024859510319E-5 36-37 1.933388576689598E-5 1.4500414325171985E-4 0.0 0.010459632199890725 8.70024859510319E-5 38-39 1.933388576689598E-5 1.4500414325171985E-4 0.0 0.016617474816647094 8.70024859510319E-5 40-41 1.933388576689598E-5 1.5467108613516784E-4 0.0 0.02339883524938586 8.70024859510319E-5 42-43 1.933388576689598E-5 1.6433802901861584E-4 0.0 0.029334338179822922 8.70024859510319E-5 44-45 1.933388576689598E-5 1.6433802901861584E-4 0.0 0.036197867627071 8.70024859510319E-5 46-47 1.933388576689598E-5 1.788384433437878E-4 0.0 0.04367524794741802 1.0150290027620389E-4 48-49 1.933388576689598E-5 2.0300580055240778E-4 0.0 0.051070459253255734 1.1600331460137588E-4 50-51 1.933388576689598E-5 2.1750621487757977E-4 0.0 0.057909821343295184 1.1600331460137588E-4 52-53 1.933388576689598E-5 2.2233968631930377E-4 0.0 0.06480718509063532 1.4017067180999585E-4 54-55 1.933388576689598E-5 2.2233968631930377E-4 0.0 0.07159337899481581 1.6433802901861584E-4 56-57 1.933388576689598E-5 2.2233968631930377E-4 0.0 0.07849074274215595 1.691715004603398E-4 58-59 1.933388576689598E-5 2.561739864113717E-4 0.0 0.08441657872970956 1.740049719020638E-4 60-61 1.933388576689598E-5 2.900082865034397E-4 0.0 0.09031824736005456 1.740049719020638E-4 62-63 1.933388576689598E-5 2.900082865034397E-4 0.0 0.09604591101849749 1.836719147855118E-4 64-65 1.933388576689598E-5 2.900082865034397E-4 0.0 0.101483566390437 1.836719147855118E-4 66-67 1.933388576689598E-5 2.900082865034397E-4 0.0 0.10728373212050579 1.981723291106838E-4 68-69 1.933388576689598E-5 2.900082865034397E-4 0.0 0.112866391635697 2.1267274343585578E-4 70-71 1.933388576689598E-5 2.900082865034397E-4 0.0 0.11807687384987547 2.2233968631930377E-4 72-73 1.933388576689598E-5 2.900082865034397E-4 0.0 0.12168264354540156 2.706744007365437E-4 74-75 1.933388576689598E-5 2.9484175794516367E-4 0.0 0.12473739749657113 2.706744007365437E-4 76-77 1.933388576689598E-5 3.045087008286117E-4 0.0 0.12727497000347623 2.706744007365437E-4 78-79 1.933388576689598E-5 3.093421722703357E-4 0.0 0.12978354168173098 2.706744007365437E-4 80-81 1.933388576689598E-5 3.093421722703357E-4 0.0 0.13095807524206993 2.755078721782677E-4 82-83 1.933388576689598E-5 3.238425865955077E-4 0.0 0.13147042321489266 2.803413436199917E-4 84-85 1.933388576689598E-5 3.5284341524585163E-4 0.0 0.1320021050734823 2.803413436199917E-4 86-87 1.933388576689598E-5 4.2051201542998753E-4 0.0 0.13224861211701022 2.803413436199917E-4 88-89 1.933388576689598E-5 4.2534548687171155E-4 0.0 0.13238878278882021 2.803413436199917E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17720 0.0 50.299538 1 CTTATAC 13610 0.0 46.355392 1 GTATCAA 32095 0.0 37.579494 1 TATACAC 19555 0.0 36.687035 3 TTATACA 20250 0.0 33.883877 2 ATCAACG 37030 0.0 32.351498 3 TCAACGC 37735 0.0 31.837883 4 TATCAAC 37865 0.0 31.491035 2 CAACGCA 38215 0.0 31.471603 5 AACGCAG 39955 0.0 30.160334 6 GTGGTAT 8260 0.0 27.32664 1 TGGTATC 7770 0.0 27.175749 2 ACGCAGA 45555 0.0 26.3776 7 CGCAGAG 45905 0.0 26.203953 8 ACACATC 28090 0.0 24.627396 6 TACACAT 29930 0.0 24.370451 5 ACATCTC 28705 0.0 23.950161 8 CACATCT 30250 0.0 22.89718 7 GCAGAGT 53050 0.0 22.70697 9 ATACACA 35805 0.0 21.866947 4 >>END_MODULE