##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139841_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14443352 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.259868069406604 31.0 31.0 34.0 30.0 34.0 2 31.535162197805608 31.0 31.0 34.0 30.0 34.0 3 31.529279699061547 31.0 31.0 34.0 30.0 34.0 4 35.33916067405959 37.0 35.0 37.0 33.0 37.0 5 35.124412255548435 37.0 35.0 37.0 32.0 37.0 6 35.12985752891711 37.0 35.0 37.0 32.0 37.0 7 34.9962966352963 36.0 35.0 37.0 32.0 37.0 8 34.975188515796056 36.0 35.0 37.0 32.0 37.0 9 36.455768716292454 38.0 35.0 39.0 32.0 39.0 10-11 36.332993961512535 38.0 35.0 39.0 32.0 39.0 12-13 36.26763887634948 38.0 35.0 39.0 32.0 39.0 14-15 37.236235155108034 39.0 36.0 40.0 32.0 41.0 16-17 37.262834555302675 39.0 36.0 40.0 32.0 41.0 18-19 37.28599403379493 39.0 36.0 40.0 32.0 41.0 20-21 37.26221142999015 39.0 36.0 40.0 31.0 41.0 22-23 37.18599611917749 39.0 36.0 40.0 31.0 41.0 24-25 37.07911040925693 39.0 36.0 40.0 31.0 41.0 26-27 36.877918263770546 39.0 36.0 40.0 31.0 41.0 28-29 36.71481024533831 38.5 35.5 40.0 30.0 41.0 30-31 36.55332015153208 38.0 35.0 40.0 30.0 41.0 32-33 36.78786910280138 38.0 35.0 40.0 30.0 41.0 34-35 36.78158925506446 38.5 35.0 40.0 30.0 41.0 36-37 36.648782164632635 38.0 35.0 40.0 30.0 41.0 38-39 36.51492133654128 38.0 35.0 40.0 30.0 41.0 40-41 36.47861473292191 38.0 35.0 40.0 30.0 41.0 42-43 36.394746025791 38.0 35.0 40.0 30.0 41.0 44-45 36.370413619195375 38.0 35.0 40.0 30.0 41.0 46-47 36.390283736409756 38.0 35.0 40.0 30.0 41.0 48-49 36.31163244065279 38.0 35.0 40.0 30.0 41.0 50-51 36.22246264825207 38.0 35.0 40.0 29.5 41.0 52-53 36.0900626574298 38.0 34.0 40.0 29.0 41.0 54-55 35.970623878566414 38.0 34.0 40.0 28.5 41.0 56-57 35.78290700424592 38.0 34.0 40.0 28.0 41.0 58-59 35.63117991626011 38.0 34.0 40.0 28.0 41.0 60-61 35.4714170539324 37.5 34.0 40.0 28.0 41.0 62-63 35.25238031428038 37.0 33.0 40.0 28.0 41.0 64-65 35.04236157925622 37.0 33.0 39.0 28.0 41.0 66-67 34.79759424117579 36.0 33.0 39.0 28.0 40.0 68-69 34.536625315491534 36.0 32.5 39.0 27.0 40.0 70-71 34.264394306584855 35.5 32.0 38.5 26.5 40.0 72-73 33.962141389721836 35.0 32.0 38.0 26.0 40.0 74-75 33.644400144017126 35.0 32.0 37.5 26.0 39.5 76-77 32.68396592272449 34.0 30.5 36.0 26.0 39.0 78-79 33.06466432740706 34.0 31.0 36.0 26.0 39.0 80-81 33.01018379380335 34.0 31.0 36.0 26.0 38.5 82-83 32.82334158759318 34.0 31.0 36.0 26.0 37.0 84-85 32.5777938856459 34.0 31.0 35.0 26.0 37.0 86-87 32.410306848632075 34.0 31.0 35.0 26.0 36.5 88-89 32.21470887847117 34.0 31.0 35.0 26.0 36.0 90-91 32.12227517422395 34.0 31.0 35.0 26.0 36.0 92-93 32.09283865953042 34.0 31.0 35.0 26.0 35.5 94-95 32.09453133639508 34.0 31.0 35.0 26.0 35.0 96-97 32.009855553041106 34.0 31.0 35.0 26.0 35.0 98-99 32.19529560862129 34.0 31.0 35.0 27.0 35.0 100-101 31.76646235078054 33.5 30.0 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 1.0 17 1.0 18 8.0 19 38.0 20 248.0 21 1586.0 22 6772.0 23 20769.0 24 50554.0 25 100868.0 26 170111.0 27 253220.0 28 344277.0 29 438524.0 30 537410.0 31 644829.0 32 774657.0 33 945170.0 34 1182481.0 35 1519701.0 36 2049266.0 37 2590408.0 38 2119294.0 39 686743.0 40 6414.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.958342910980775 25.06614115615267 16.7693690495115 24.206146883355053 2 14.661673006366424 25.0477788271822 38.49931797944113 21.79123018701024 3 17.269315322371153 28.135677922964142 32.136612055151744 22.458394699512965 4 12.922166544165096 20.803668012799246 37.92207653735781 28.352088905677853 5 12.40514667232371 38.72620427723426 36.40182002072649 12.466829029715539 6 29.302422318586434 40.16972652885563 18.051121374041152 12.476729778516788 7 24.846254525957686 33.210040162422125 24.49697272489101 17.446732586729176 8 23.48274832601186 38.37135590131709 21.461396218827876 16.684499553843178 9 24.918536915807355 15.937754615410604 21.656579442223663 37.48712902655838 10-11 23.57520954969456 27.546306425267485 29.83435908783501 19.044124937202945 12-13 24.054993762479025 25.160528407826554 29.872674673089232 20.91180315660519 14-15 21.226149580789833 26.682334543947974 27.192320037620078 24.89919583764212 16-17 21.007692674110555 29.551682324158545 28.075657229706792 21.364967772024112 18-19 21.019791713004494 28.813378251530946 29.632903993324238 20.533926042140322 20-21 21.68470472236835 28.073951787386882 29.468458545534297 20.772884944710473 22-23 21.406452321069292 28.06538921736854 29.315821831159166 21.212336630402998 24-25 21.2680048436749 28.173344984513605 29.3970722028084 21.161577969003098 26-27 21.325305509563467 28.269238839863327 29.292436700869256 21.113018949703953 28-29 21.300128744363793 28.34832091384364 29.296260587913174 21.055289753879393 30-31 21.4632569826552 28.27208015668458 29.20390869806636 21.060754162593863 32-33 21.360250897425985 28.36391376899491 29.136406556919177 21.139428776659933 34-35 21.45577027804969 28.38026183927483 29.152100215252712 21.011867667422766 36-37 21.41855373110758 28.346704781687254 29.106395393601375 21.128346093603792 38-39 21.33799670680463 28.370538914200527 29.174246098743446 21.1172182802514 40-41 21.51154092771995 28.28725925203326 29.031753633070945 21.16944618717585 42-43 21.435605784103142 28.433718501462522 28.808401727092093 21.322273987342243 44-45 21.555894898209722 28.48221130563991 28.58328844221149 21.378605353938877 46-47 21.60637516461695 28.456524702955516 28.403384874929653 21.53371525749788 48-49 21.524980103895405 28.576309493212094 28.41171157858659 21.48699882430591 50-51 21.580625683768748 28.618410383449692 28.27598653087351 21.524977401908043 52-53 21.629300011542547 28.569313996615676 28.188023709131983 21.613362282709794 54-55 21.607443385869757 28.48367988894056 28.245937252653995 21.662939472535687 56-57 21.64883596211501 28.45668189704002 28.214321680921454 21.680160459923513 58-59 21.630295099859865 28.49807237806613 28.202435700223965 21.66919682185004 60-61 21.688216845561094 28.448256266075266 28.24614884434396 21.61737804401968 62-63 21.63468834870467 28.543217870896765 28.189789515041447 21.632304265357117 64-65 21.54635107299012 28.540090210623347 28.17953445758505 21.734024258801483 66-67 21.638832220942422 28.60651823444913 28.002705004426552 21.751944540181896 68-69 21.64565481104332 28.62253128233508 27.94934484932764 21.78246905729396 70-71 21.646857495574324 28.42577194752604 28.036513675026125 21.89085688187351 72-73 21.67657308692006 28.44508714278607 27.974506044516033 21.903833725777833 74-75 21.67223399998665 28.432308656920814 27.948401568233656 21.94705577485888 76-77 21.81236484439708 28.41735895018418 27.888783865457228 21.881492339961515 78-79 21.780541862293727 28.409199160922377 27.85130334159971 21.958955635184186 80-81 21.81224464388241 28.342893070362408 27.859353863780417 21.985508421974767 82-83 21.786878234487876 28.409241156159993 27.93721374320609 21.866666866146037 84-85 21.87276102425298 28.40468926771814 27.902577867020867 21.819971841008005 86-87 21.827954886620457 28.431272317463403 27.88197722554278 21.85879557037336 88-89 21.83006553436087 28.360054374621 27.968462561257912 21.841417529760214 90-91 21.84934670618718 28.332542203592464 28.085343925098886 21.73276716512147 92-93 21.919416377325295 28.261347409092224 28.05373751578102 21.765498697801466 94-95 21.73901755461501 28.314550007636484 28.177125371493915 21.769307066254594 96-97 21.57346041768359 28.418269475078468 28.265045533749067 21.74322457348887 98-99 21.69784772611331 29.012321183290595 28.385006776557166 20.904824314038933 100-101 25.396482764154854 36.14954706862377 29.202071089527614 9.25189907769377 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4493.0 1 4033.5 2 4925.0 3 6490.0 4 8040.0 5 11242.0 6 14024.5 7 16955.0 8 19260.5 9 19721.5 10 18960.5 11 18052.0 12 20289.0 13 27445.5 14 44073.5 15 66830.0 16 83308.0 17 89084.5 18 89734.5 19 88913.0 20 86880.5 21 85572.5 22 87333.5 23 96395.0 24 113889.5 25 139171.5 26 171469.0 27 205756.5 28 241789.5 29 279422.5 30 313283.0 31 347227.0 32 382755.5 33 415057.5 34 445658.0 35 475609.0 36 505721.5 37 531880.5 38 550841.0 39 567159.5 40 584560.5 41 599522.0 42 607049.5 43 612869.0 44 619263.5 45 621579.0 46 617030.0 47 608973.5 48 597042.0 49 579055.0 50 558911.0 51 532717.0 52 499549.0 53 465430.0 54 429628.0 55 390724.0 56 353104.5 57 314637.5 58 273636.0 59 233066.5 60 193817.5 61 157647.0 62 125232.5 63 96665.5 64 72113.5 65 53430.0 66 39910.5 67 30295.0 68 22935.5 69 16621.0 70 12120.5 71 8915.0 72 6435.0 73 4529.0 74 3137.0 75 2193.0 76 1530.5 77 1032.0 78 714.0 79 475.0 80 333.5 81 258.5 82 200.0 83 145.5 84 108.5 85 78.5 86 60.0 87 44.5 88 27.0 89 18.0 90 12.0 91 9.5 92 7.5 93 4.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0016547405339148418 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 7.892904638756986E-4 14-15 0.0 16-17 0.0 18-19 4.119542333386322E-4 20-21 0.0 22-23 0.0014785261220593604 24-25 2.1128081617294384E-4 26-27 0.005146013007734752 28-29 3.953027217840719E-4 30-31 0.0 32-33 3.4808574075813214E-6 34-35 2.1659021672471224E-4 36-37 0.016723806925650845 38-39 0.006440532872925422 40-41 0.012696406443176904 42-43 0.0015806137436951472 44-45 0.0027646869367562625 46-47 0.0 48-49 6.382743910435556E-4 50-51 1.4998523957761007E-5 52-53 3.785683664941556E-6 54-55 0.0041467463596153225 56-57 0.007860444243725222 58-59 0.011125818790726629 60-61 0.00580307639738218 62-63 0.006259826978382317 64-65 7.735449882020213E-4 66-67 9.034194137358269E-5 68-69 0.0 70-71 9.308746057746045E-5 72-73 4.296367004949716E-6 74-75 2.617765069982677E-5 76-77 8.866477193004544E-6 78-79 9.0167158641226E-6 80-81 0.0018729379607203595 82-83 0.0020477384878994083 84-85 0.008535617470281007 86-87 0.010057631733870698 88-89 0.04549133339332807 90-91 3.8505045655584625E-4 92-93 4.2080803246684627E-4 94-95 1.6026194066312332E-5 96-97 0.008064641561553723 98-99 5.852956638604861E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 591.0 20-21 1974.0 22-23 3609.0 24-25 6469.0 26-27 8682.0 28-29 14002.0 30-31 33164.0 32-33 46779.0 34-35 68226.0 36-37 96298.0 38-39 100838.0 40-41 113457.0 42-43 130850.0 44-45 154524.0 46-47 153948.0 48-49 141943.0 50-51 131209.0 52-53 120900.0 54-55 135606.0 56-57 144084.0 58-59 150014.0 60-61 149440.0 62-63 150677.0 64-65 166294.0 66-67 176614.0 68-69 180961.0 70-71 180457.0 72-73 176778.0 74-75 181739.0 76-77 183467.0 78-79 198107.0 80-81 198784.0 82-83 191731.0 84-85 194739.0 86-87 206398.0 88-89 222518.0 90-91 241462.0 92-93 254420.0 94-95 311702.0 96-97 392806.0 98-99 1158171.0 100-101 7568920.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.854948542525 #Duplication Level Percentage of deduplicated Percentage of total 1 90.22368278625548 77.46149642931063 2 6.858686502283838 11.777043534457793 3 1.6428939000119853 4.231517137390715 4 0.6108226613996929 2.0976859265231527 5 0.26750625705827613 1.148336796727088 6 0.1295675158402183 0.6674407443146841 7 0.07930181821215886 0.4765917465353499 8 0.050785061705880576 0.34881190875898666 9 0.03178753937694005 0.24562058017506078 >10 0.10278811702307093 1.3650958171536376 >50 0.0017531891583390249 0.10104902651994646 >100 3.988066346460969E-4 0.06413755734313785 >500 2.584503946356844E-5 0.015172794789791388 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.923600560313146E-6 2 0.0 4.154160336187888E-5 0.0 0.0 1.3847201120626292E-5 3 0.0 4.154160336187888E-5 0.0 0.0 1.3847201120626292E-5 4 0.0 4.8465203922192023E-5 0.0 0.0 1.3847201120626292E-5 5 0.0 4.8465203922192023E-5 0.0 6.923600560313146E-6 1.3847201120626292E-5 6 4.154160336187888E-5 4.8465203922192023E-5 0.0 6.923600560313146E-6 2.7694402241252584E-5 7 4.154160336187888E-5 4.8465203922192023E-5 0.0 6.923600560313146E-6 2.7694402241252584E-5 8 4.154160336187888E-5 4.8465203922192023E-5 0.0 6.923600560313146E-6 2.7694402241252584E-5 9 4.154160336187888E-5 6.923600560313146E-5 0.0 1.3847201120626292E-5 4.154160336187888E-5 10-11 4.8465203922192023E-5 6.923600560313146E-5 0.0 2.077080168093944E-5 4.8465203922192023E-5 12-13 4.8465203922192023E-5 7.269780588328804E-5 0.0 2.4232601961096012E-5 5.538880448250517E-5 14-15 4.8465203922192023E-5 1.3501021092610636E-4 0.0 2.7694402241252584E-5 6.577420532297489E-5 16-17 9.00068072840709E-5 1.5231921232688921E-4 0.0 4.154160336187888E-5 6.923600560313146E-5 18-19 9.693040784438405E-5 1.557810126070458E-4 0.0 9.00068072840709E-5 7.615960616344461E-5 20-21 9.693040784438405E-5 1.5924281288720235E-4 0.0 1.384720112062629E-4 7.962140644360118E-5 22-23 1.038540084046972E-4 1.800136145681418E-4 0.0 2.769440224125258E-4 1.038540084046972E-4 24-25 1.0731580868485377E-4 1.9732261596892468E-4 0.0 7.096690574320975E-4 1.1770120952532349E-4 26-27 1.1077760896501034E-4 2.1463161736970753E-4 0.0 0.0022432465815414595 1.1770120952532349E-4 28-29 1.1077760896501034E-4 2.1463161736970753E-4 0.0 0.011763197351972034 1.1770120952532349E-4 30-31 1.1077760896501034E-4 2.5271142045142983E-4 0.0 0.021058131104192433 1.1770120952532349E-4 32-33 1.1423940924516692E-4 2.561732207315864E-4 0.0 0.034566075797363385 1.2462481008563664E-4 34-35 1.280866103657932E-4 3.1502382549424815E-4 0.0 0.05376522015111174 1.280866103657932E-4 36-37 1.3154841064594977E-4 3.80798030817223E-4 0.0 0.08078803313801394 1.3501021092610636E-4 38-39 1.3154841064594977E-4 3.9464523193784935E-4 0.0 0.12559411416408048 1.384720112062629E-4 40-41 1.3154841064594977E-4 4.3618683529972823E-4 0.0 0.20152524150903472 1.4539561176657608E-4 42-43 1.3154841064594977E-4 4.4311043586004134E-4 0.0 0.2410278445059014 1.4885741204673263E-4 44-45 1.3154841064594977E-4 4.984992403425465E-4 0.0 0.29859412136462504 1.557810126070458E-4 46-47 1.3154841064594977E-4 5.469644442647385E-4 0.0 0.3606503531867118 1.6962821372767207E-4 48-49 1.384720112062629E-4 5.538880448250516E-4 0.0 0.41264313159438337 1.7309001400782865E-4 50-51 1.6962821372767207E-4 5.781206467861478E-4 0.0 0.45930127577033364 1.7309001400782865E-4 52-53 1.7309001400782865E-4 5.815824470663043E-4 0.0 0.5188546259898672 1.8347541484829837E-4 54-55 1.7655181428798524E-4 5.815824470663043E-4 0.0 0.634596456556622 1.9732261596892468E-4 56-57 1.800136145681418E-4 5.885060476266174E-4 0.0 0.7569987908623981 2.0078441624908123E-4 58-59 1.800136145681418E-4 5.954296481869305E-4 0.0 0.8577302554143942 2.0078441624908123E-4 60-61 1.9732261596892468E-4 6.231240504281832E-4 0.0 0.9245395390211357 2.0078441624908123E-4 62-63 2.2155521793002067E-4 6.369712515488094E-4 0.0 0.9812922928140226 2.077080168093944E-4 64-65 2.2847881849033384E-4 7.062072571519409E-4 0.0 1.0060337794163017 2.077080168093944E-4 66-67 2.7348222213236927E-4 7.096690574320975E-4 0.0 1.0171738527178456 2.1116981708955095E-4 68-69 2.769440224125258E-4 7.200544582725672E-4 0.0 1.027552329957755 2.1463161736970753E-4 70-71 2.942530238133087E-4 7.339016593931935E-4 0.0 1.0376227069727304 2.1463161736970753E-4 72-73 3.184856257744047E-4 7.408252599535066E-4 0.0 1.045242129389355 2.3540241905064697E-4 74-75 3.184856257744047E-4 7.61596061634446E-4 0.0 1.051940712931458 2.3540241905064697E-4 76-77 3.288710266148744E-4 8.031376649963249E-4 0.0 1.0579850162206115 2.3886421933080356E-4 78-79 3.3925642745534414E-4 8.169848661169513E-4 0.0 1.0632711852484105 2.423260196109601E-4 80-81 3.3925642745534414E-4 8.204466663971078E-4 0.0 1.0663487256974697 2.492496201712733E-4 82-83 3.3925642745534414E-4 8.27370266957421E-4 0.0 1.068169632644832 2.700204218522127E-4 84-85 3.427182277355007E-4 8.377556677978907E-4 0.0 1.0698797619832292 2.700204218522127E-4 86-87 3.496418282958139E-4 8.654500700391432E-4 0.0 1.0701428588045214 2.700204218522127E-4 88-89 3.5310362857597047E-4 8.723736705994565E-4 0.0 1.0701878622081633 2.769440224125258E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15575 0.0 46.324245 1 GTATCAA 25240 0.0 29.011015 1 TCAACGC 32430 0.0 23.865093 3 ATCAACG 32635 0.0 23.690039 2 CAACGCA 33370 0.0 23.217588 4 AACGCAG 34620 0.0 22.462793 5 TATCAAC 34790 0.0 22.151379 1 ACGCAGA 41175 0.0 18.9369 6 CGCAGAG 41825 0.0 18.613173 7 GTACATG 33420 0.0 17.35019 1 TACATGG 33935 0.0 16.904327 2 AGAGTAC 44385 0.0 16.255552 10-11 CAGAGTA 48850 0.0 16.139362 9 ACATGGG 34475 0.0 16.088377 3 GCAGAGT 49335 0.0 15.913731 8 GAGTACT 30285 0.0 15.641859 12-13 AGTACTT 33880 0.0 14.37219 12-13 TGGTATC 7370 0.0 14.3455105 2 GTGGTAT 8455 0.0 14.16537 1 CATGGGG 24115 0.0 13.906226 4 >>END_MODULE