##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139840_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11872294 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.541336914331804 31.0 31.0 34.0 30.0 34.0 2 31.78961049987475 31.0 31.0 34.0 30.0 34.0 3 31.803288058735742 31.0 31.0 34.0 30.0 34.0 4 35.57199964893053 37.0 35.0 37.0 33.0 37.0 5 35.392396953781635 37.0 35.0 37.0 33.0 37.0 6 35.37996995357426 37.0 35.0 37.0 33.0 37.0 7 35.243829793972424 37.0 35.0 37.0 32.0 37.0 8 35.222643492487634 37.0 35.0 37.0 32.0 37.0 9 36.73142646231638 39.0 35.0 39.0 32.0 39.0 10-11 36.64624132454941 38.5 35.0 39.0 32.0 39.0 12-13 36.57556799890568 38.0 35.0 39.0 32.0 39.0 14-15 37.61892015140461 39.0 36.0 41.0 32.0 41.0 16-17 37.65799010705092 39.0 36.0 41.0 32.0 41.0 18-19 37.68113719218881 39.0 36.5 41.0 32.0 41.0 20-21 37.65509879876525 39.0 37.0 41.0 32.0 41.0 22-23 37.58824963391166 39.0 36.0 41.0 32.0 41.0 24-25 37.48907520662584 39.0 36.0 41.0 32.0 41.0 26-27 37.3137727630499 39.0 36.0 40.5 31.5 41.0 28-29 37.16507305186757 39.0 36.0 40.0 31.0 41.0 30-31 37.01816829051346 39.0 36.0 40.0 31.0 41.0 32-33 37.25161653262185 39.0 36.0 40.0 31.0 41.0 34-35 37.256630757161886 39.0 36.0 41.0 31.0 41.0 36-37 37.142208352149666 39.0 36.0 40.5 31.0 41.0 38-39 37.02394005354269 39.0 36.0 40.0 31.0 41.0 40-41 36.99786194772628 39.0 35.5 40.0 31.0 41.0 42-43 36.921826032400816 39.0 35.0 40.0 30.0 41.0 44-45 36.897064820911964 39.0 35.0 40.0 30.5 41.0 46-47 36.91114038374485 39.0 35.0 40.0 30.5 41.0 48-49 36.837594360833556 39.0 35.0 40.0 30.0 41.0 50-51 36.75159546800012 39.0 35.0 40.0 30.0 41.0 52-53 36.62700382514995 39.0 35.0 40.0 30.0 41.0 54-55 36.51326597889395 38.0 35.0 40.0 30.0 41.0 56-57 36.33547410222616 38.0 35.0 40.0 29.5 41.0 58-59 36.184751100580215 38.0 34.0 40.0 29.0 41.0 60-61 36.02486910148685 38.0 34.0 40.0 29.0 41.0 62-63 35.80368785942039 38.0 34.0 40.0 28.5 41.0 64-65 35.59333617944102 37.0 34.0 40.0 28.0 41.0 66-67 35.34533507824628 37.0 34.0 39.5 28.0 41.0 68-69 35.075654774206946 36.0 33.5 39.0 28.0 40.5 70-71 34.79939561639291 36.0 33.0 39.0 28.0 40.0 72-73 34.49679123949801 35.5 33.0 38.5 28.0 40.0 74-75 34.17507829915719 35.0 32.5 38.0 28.0 40.0 76-77 33.14018540786988 34.5 31.0 36.5 26.0 39.0 78-79 33.51179730028812 35.0 32.0 37.0 27.0 39.0 80-81 33.44620390735032 35.0 32.0 36.0 27.0 39.0 82-83 33.25543456427344 35.0 32.0 36.0 27.0 37.5 84-85 33.01765822329146 34.5 32.0 35.5 27.0 37.0 86-87 32.84751576046346 34.0 32.0 35.0 27.0 37.0 88-89 32.65336571352213 34.0 32.0 35.0 27.0 36.0 90-91 32.56013511550437 34.0 32.0 35.0 27.0 36.0 92-93 32.521194300837756 34.0 32.0 35.0 27.0 36.0 94-95 32.51273702231214 34.0 32.0 35.0 27.0 35.0 96-97 32.42139176943655 34.0 31.5 35.0 27.0 35.0 98-99 32.57061031572569 34.0 32.0 35.0 28.0 35.0 100-101 32.12553179696245 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 21.0 20 150.0 21 845.0 22 3791.0 23 12368.0 24 30699.0 25 62181.0 26 108361.0 27 166140.0 28 231334.0 29 302009.0 30 376540.0 31 460218.0 32 560307.0 33 690505.0 34 873949.0 35 1131792.0 36 1558178.0 37 2168212.0 38 2157301.0 39 952668.0 40 24722.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.03336524516661 23.049917732832427 15.004269604509457 24.912447417491514 2 14.554882516652807 23.72449918602752 39.19207366764704 22.528544629672634 3 17.147587483935286 27.533389924474577 31.704791003322523 23.614231588267607 4 12.3508818093622 19.42624567754134 38.707801541976636 29.515070971119815 5 12.517176545661691 38.4107907031278 36.37219563464315 12.69983711656736 6 29.574798265608987 39.3985357842385 18.381131734102947 12.645534216049569 7 25.35216867102516 32.934671260667905 24.381101074484846 17.332058993822088 8 23.874678305641687 37.538415069572906 21.67715860136213 16.909748023423273 9 25.207537818723154 15.936271456889461 21.54894412149834 37.307246602889045 10-11 23.695677516072294 27.149757241523837 29.866970107040814 19.287595135363055 12-13 24.251335190138327 24.801684576104375 29.799799708318236 21.14718052543906 14-15 21.389568856701157 26.285695081338112 27.0643735743067 25.26036248765403 16-17 21.24409149571262 29.194825363994525 27.900298796508917 21.66078434378394 18-19 21.27580577424019 28.56784217577702 29.335409660480416 20.820942389502374 20-21 21.952795518255417 27.879240983565268 29.088957225492347 21.07900627268697 22-23 21.660449756550396 27.835584775470718 28.957880516453766 21.546084951525117 24-25 21.4988257045562 27.901744294323017 29.079932988895806 21.519497012224974 26-27 21.533446255565664 28.013834800226295 28.951509484708705 21.501209459499336 28-29 21.49029108973849 28.09037951168512 28.975421448842773 21.443907949733617 30-31 21.72005022513039 27.997921223580807 28.83292879831772 21.449099752971083 32-33 21.529482195524114 28.14154171038263 28.82762711423678 21.501348979856484 34-35 21.64621612592858 28.14385316444997 28.836518848864813 21.37341186075664 36-37 21.626735976991462 28.087723382199435 28.79226913034175 21.493271510467345 38-39 21.50361097928089 28.193692073263264 28.837607506780827 21.46508944067502 40-41 21.714202651824948 28.03541985518579 28.71004526264501 21.54033223034425 42-43 21.608890569718252 28.202478881181726 28.512638393730683 21.67599215536934 44-45 21.722870701900927 28.220304566727496 28.345782724430425 21.711042006941156 46-47 21.765830344759614 28.180904479310463 28.207658246897104 21.845606929032815 48-49 21.67065526320081 28.293406257806108 28.212544112251432 21.82339436674165 50-51 21.693886376526486 28.363739902306413 28.10410921039041 21.838264510776693 52-53 21.814579292031205 28.25716683377553 28.003953955046402 21.92429991914687 54-55 21.76605623752926 28.167853220657836 28.096320646161477 21.969769895651428 56-57 21.787204740215454 28.204635229554686 28.061458394220963 21.9467016360089 58-59 21.745968304855495 28.236196590351003 28.027194160161738 21.99064094463176 60-61 21.81495445101494 28.16198872048944 28.07493330467199 21.94812352382363 62-63 21.781424628140865 28.27384652913711 28.032749418868335 21.911979423853694 64-65 21.722818728864233 28.24728872232477 27.988074977851817 22.041817570959182 66-67 21.79208556440533 28.37560880390868 27.79021555254934 22.042090079136646 68-69 21.781894718187324 28.33805620617948 27.813190093893343 22.066858981739855 70-71 21.777928915676778 28.11434694188655 27.878461537172942 22.22926260526373 72-73 21.809752418653208 28.13734249280437 27.806364556883118 22.246540531659306 74-75 21.734833292557713 28.216400792857517 27.801381161381588 22.247384753203185 76-77 21.95145026553941 28.164061012722584 27.707982521862647 22.17650619987536 78-79 21.934876211882038 28.13452749973255 27.669980404644264 22.260615883741153 80-81 21.91706286390195 28.143200790868665 27.639992156900256 22.29974418832913 82-83 21.923516396531287 28.09596824273493 27.741828616720525 22.23868674401325 84-85 21.988369232790436 28.10917803211729 27.744620752443673 22.157831982648602 86-87 21.912907470169802 28.133994249941225 27.796257314377588 22.15684096551139 88-89 21.93173126026672 28.1490993563793 27.79768594545513 22.12148343789885 90-91 21.964095311368148 28.148394638099482 27.86632325502373 22.021186795508644 92-93 22.05256325849212 28.015481814852787 27.81903730347665 22.112917623178443 94-95 21.85087797966503 28.022103626046537 27.99228458834891 22.134733805939526 96-97 21.728181695843354 28.056270352354023 28.10388982284956 22.111658128953064 98-99 21.896353627769834 28.675283306963745 28.18801562284786 21.24034744241856 100-101 25.648337699458683 35.872833232834644 29.02276414173139 9.456064925975284 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2538.0 1 2331.0 2 3162.0 3 4427.0 4 5747.0 5 8494.0 6 10998.0 7 13353.0 8 15077.0 9 15223.0 10 14395.5 11 13470.0 12 14658.5 13 19308.5 14 30234.5 15 44862.0 16 55815.5 17 60878.0 18 62437.5 19 62575.5 20 62226.5 21 63046.5 22 66400.5 23 74606.0 24 88905.0 25 109645.0 26 136153.5 27 163985.5 28 192923.0 29 223162.5 30 250947.5 31 279087.5 32 307159.0 33 332858.0 34 358905.5 35 383212.0 36 408862.5 37 431811.0 38 447836.0 39 461367.0 40 474454.5 41 486875.0 42 494740.5 43 500662.0 44 506366.5 45 509156.5 46 507948.5 47 503508.0 48 495747.0 49 483687.5 50 469599.0 51 452891.5 52 430845.5 53 405991.5 54 379894.5 55 351468.5 56 322065.5 57 291087.5 58 257908.5 59 222905.0 60 186908.0 61 152352.0 62 121202.5 63 93812.5 64 69909.5 65 52151.5 66 39196.5 67 29669.0 68 22688.5 69 16489.0 70 11735.5 71 8505.0 72 6080.5 73 4232.0 74 2917.5 75 2041.0 76 1419.0 77 931.5 78 651.0 79 475.0 80 331.5 81 225.0 82 163.0 83 111.0 84 76.0 85 56.5 86 44.0 87 33.0 88 21.0 89 13.0 90 9.0 91 7.0 92 6.0 93 3.5 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0022826254134205234 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 9.138924625687335E-4 14-15 0.0 16-17 0.0 18-19 4.043026562516056E-4 20-21 0.0 22-23 0.0014026867727985253 24-25 2.0645984193855846E-4 26-27 0.005100632098994417 28-29 3.542938943773981E-4 30-31 0.0 32-33 0.0 34-35 2.2109333289228048E-4 36-37 0.020643568707223774 38-39 0.008264094775760018 40-41 0.01367338066165863 42-43 0.001728171516022672 44-45 0.0029703861368975603 46-47 4.488133934892885E-6 48-49 6.314121264197914E-4 50-51 9.189327625168061E-6 52-53 1.3932186383117571E-5 54-55 0.004486718257981888 56-57 0.009153970399345283 58-59 0.012185035459414531 60-61 0.006301331933080635 62-63 0.0070403846230697965 64-65 8.099270255749957E-4 66-67 1.369635713930986E-4 68-69 5.151756316156279E-6 70-71 5.7584064751291544E-5 72-73 0.0 74-75 8.64691038596079E-5 76-77 1.0988253282534637E-5 78-79 0.0 80-81 0.002157716800865455 82-83 0.00214010359261336 84-85 0.010254023345623198 86-87 0.011503610363868044 88-89 0.04790989842585448 90-91 5.653834201060772E-4 92-93 6.306984895672173E-4 94-95 0.0 96-97 0.009507961620074695 98-99 1.079441652328683E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 425.0 20-21 1313.0 22-23 2436.0 24-25 5276.0 26-27 6384.0 28-29 11211.0 30-31 29636.0 32-33 42049.0 34-35 61371.0 36-37 88988.0 38-39 94474.0 40-41 102380.0 42-43 115589.0 44-45 135657.0 46-47 135893.0 48-49 126660.0 50-51 119355.0 52-53 109779.0 54-55 120888.0 56-57 127208.0 58-59 133763.0 60-61 135341.0 62-63 130905.0 64-65 141396.0 66-67 150161.0 68-69 153964.0 70-71 152647.0 72-73 148118.0 74-75 151117.0 76-77 151862.0 78-79 162836.0 80-81 162731.0 82-83 156705.0 84-85 157353.0 86-87 165120.0 88-89 176051.0 90-91 188091.0 92-93 196972.0 94-95 235034.0 96-97 293745.0 98-99 919910.0 100-101 6171500.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.5636421735174 #Duplication Level Percentage of deduplicated Percentage of total 1 90.83986064261582 78.63429191759582 2 6.460559274588699 11.184990825725906 3 1.5307016834850802 3.975093384108095 4 0.5378408796834419 1.8622986182082912 5 0.24879090996801628 1.0768123653247574 6 0.13365834295303067 0.6941971783734849 7 0.07278271222956177 0.4410235660500512 8 0.043339688158065916 0.3001313006101318 9 0.03016121795137162 0.23497783904340022 >10 0.09973153493726868 1.3753623224206653 >50 0.002013544578573869 0.1212240353770008 >100 5.135832299534145E-4 0.06714226933068887 >500 3.065944102363659E-5 0.019107876727774607 >1k 1.532618010589396E-5 0.01334650110396927 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.422972005241784E-6 0.0 0.0 0.0 3 0.0 1.684594401048357E-5 0.0 8.422972005241784E-6 0.0 4 0.0 9.265269205765963E-5 0.0 2.526891601572535E-5 0.0 5 0.0 1.0949863606814318E-4 0.0 2.526891601572535E-5 0.0 6 2.526891601572535E-5 1.1792160807338498E-4 0.0 2.526891601572535E-5 0.0 7 2.526891601572535E-5 1.1792160807338498E-4 0.0 3.369188802096714E-5 0.0 8 2.526891601572535E-5 1.2634458007862676E-4 0.0 4.211486002620892E-5 0.0 9 2.526891601572535E-5 1.6845944010483567E-4 0.0 1.0949863606814318E-4 0.0 10-11 3.790337402358803E-5 1.6845944010483567E-4 0.0 1.3476755208386855E-4 0.0 12-13 4.211486002620892E-5 1.6845944010483567E-4 0.0 1.516134960943521E-4 0.0 14-15 4.6326346028829806E-5 2.147857861336655E-4 0.0 1.8109389811269834E-4 0.0 16-17 6.738377604193427E-5 2.1899727213628637E-4 0.0 1.9372835612056102E-4 0.0 18-19 6.738377604193427E-5 2.4426618815201175E-4 0.0 2.4426618815201175E-4 0.0 20-21 6.738377604193427E-5 2.7795807617297886E-4 0.0 3.663992822280176E-4 0.0 22-23 7.159526204455517E-5 2.821695621755998E-4 0.0 7.243755924507935E-4 0.0 24-25 8.844120605503873E-5 2.948040201834624E-4 0.0 0.001398213352870136 0.0 26-27 1.010756640629014E-4 3.032269921887042E-4 0.0 0.0035713401302225165 0.0 28-29 1.010756640629014E-4 3.032269921887042E-4 0.0 0.017654549322986778 0.0 30-31 1.010756640629014E-4 3.11649964193946E-4 0.0 0.02833908931163598 0.0 32-33 1.0528715006552229E-4 3.2849590820442957E-4 0.0 0.03968483260269667 0.0 34-35 1.1371012207076408E-4 3.958796842463638E-4 0.0 0.0565055076971645 0.0 36-37 1.1792160807338498E-4 4.548404882830563E-4 0.0 0.079584450991527 0.0 38-39 1.1792160807338498E-4 4.548404882830563E-4 0.0 0.11831327627162871 0.0 40-41 1.3476755208386855E-4 4.7589791829616077E-4 0.0 0.19040970515049577 0.0 42-43 1.4319052408911032E-4 4.969553483092652E-4 0.0 0.22610626050871047 0.0 44-45 1.474020100917312E-4 5.643391243511995E-4 0.0 0.2776632721527954 0.0 46-47 1.516134960943521E-4 6.23299928387892E-4 0.0 0.3330401016012575 0.0 48-49 1.516134960943521E-4 6.527803304062383E-4 0.0 0.3777408140330757 0.0 50-51 1.600364680995939E-4 6.822607324245845E-4 0.0 0.4202094388835047 0.0 52-53 1.600364680995939E-4 6.822607324245845E-4 0.0 0.4754557122658856 0.0 54-55 1.6424795410221478E-4 6.906837044298263E-4 0.0 0.5868453055492056 0.0 56-57 1.6845944010483567E-4 6.906837044298263E-4 0.0 0.7011703045763522 0.0 58-59 1.6845944010483567E-4 6.906837044298263E-4 0.0 0.7937345554279569 0.0 60-61 1.6845944010483567E-4 7.327985644560352E-4 0.0 0.849044001100377 0.0 62-63 1.6845944010483567E-4 7.41221536461277E-4 0.0 0.8801205563137167 0.0 64-65 1.6845944010483567E-4 8.001823404979694E-4 0.0 0.9011948322708316 0.0 66-67 1.6845944010483567E-4 8.170282845084531E-4 0.0 0.9116814324173577 0.0 68-69 1.8951687011794014E-4 8.338742285189366E-4 0.0 0.921730038019611 0.0 70-71 2.147857861336655E-4 8.465086865267993E-4 0.0 0.9310205761413928 0.0 72-73 2.3584321614676995E-4 8.507201725294201E-4 0.0 0.9381590449158351 0.0 74-75 2.4426618815201175E-4 8.717776025425246E-4 0.0 0.9441772584135804 0.0 76-77 2.569006461598744E-4 9.181039485713545E-4 0.0 0.949702728049019 0.0 78-79 2.611121321624953E-4 9.265269205765962E-4 0.0 0.9547944146261876 0.0 80-81 2.611121321624953E-4 9.391613785844589E-4 0.0 0.9578435304920851 0.0 82-83 2.611121321624953E-4 9.475843505897007E-4 0.0 0.9596713154172227 0.0 84-85 2.611121321624953E-4 9.517958365923215E-4 0.0 0.9613011605002368 0.0 86-87 2.653236181651162E-4 9.517958365923215E-4 0.0 0.961600176006423 0.0 88-89 2.695351041677371E-4 0.0010023336686237722 0.0 0.9616591368104597 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11325 0.0 43.011715 1 GTATCAA 19135 0.0 31.815113 1 TCAACGC 23590 0.0 25.042236 4 ATCAACG 23900 0.0 24.751705 3 CAACGCA 24225 0.0 24.436548 5 AACGCAG 24900 0.0 23.807016 6 TATCAAC 25725 0.0 23.298721 2 GTACATG 27765 0.0 20.303171 1 ACGCAGA 29630 0.0 19.993082 7 TACATGG 27705 0.0 19.903526 2 CGCAGAG 29820 0.0 19.824482 8 ACATGGG 28060 0.0 19.081993 3 AGAGTAC 32205 0.0 16.747143 10-11 CATGGGG 21035 0.0 16.495926 4 GCAGAGT 36095 0.0 16.094309 9 GAGTACT 21655 0.0 15.551075 12-13 CAGAGTA 35380 0.0 14.908451 10-11 ATGGGGG 12670 0.0 14.550291 5 AGTACTT 24665 0.0 14.309384 12-13 GTACTTT 24970 0.0 13.544548 14-15 >>END_MODULE