##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139837_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8418641 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.62930347071457 31.0 31.0 34.0 30.0 34.0 2 31.86631904127994 31.0 31.0 34.0 30.0 34.0 3 31.883125554350162 31.0 31.0 34.0 30.0 34.0 4 35.63366783308612 37.0 35.0 37.0 33.0 37.0 5 35.456739038996915 37.0 35.0 37.0 33.0 37.0 6 35.445734293694194 37.0 35.0 37.0 33.0 37.0 7 35.30961648085481 37.0 35.0 37.0 32.0 37.0 8 35.28793495292174 37.0 35.0 37.0 32.0 37.0 9 36.80896370328655 39.0 37.0 39.0 32.0 39.0 10-11 36.733378700909086 39.0 35.0 39.0 32.0 39.0 12-13 36.66749983756286 39.0 35.0 39.0 32.0 39.0 14-15 37.74042538457216 39.0 37.0 41.0 32.0 41.0 16-17 37.77791219509182 39.0 37.0 41.0 32.0 41.0 18-19 37.7988776335753 39.5 37.0 41.0 32.0 41.0 20-21 37.77229871141072 39.5 37.0 41.0 32.0 41.0 22-23 37.703760567578605 39.0 37.0 41.0 32.0 41.0 24-25 37.608704175411354 39.0 36.5 41.0 32.0 41.0 26-27 37.43879302196653 39.0 36.0 41.0 32.0 41.0 28-29 37.29454122992391 39.0 36.0 40.5 31.0 41.0 30-31 37.157151208862544 39.0 36.0 40.0 31.0 41.0 32-33 37.388342142474855 39.0 36.0 40.5 32.0 41.0 34-35 37.39199054509723 39.0 36.0 41.0 31.0 41.0 36-37 37.2799620137116 39.0 36.0 41.0 31.0 41.0 38-39 37.16718209329058 39.0 36.0 41.0 31.0 41.0 40-41 37.149794717754666 39.0 36.0 40.5 31.0 41.0 42-43 37.07641599647927 39.0 36.0 40.0 31.0 41.0 44-45 37.04903263437235 39.0 35.5 40.0 31.0 41.0 46-47 37.062897159586925 39.0 36.0 40.0 31.0 41.0 48-49 36.987457908793445 39.0 35.0 40.0 31.0 41.0 50-51 36.906680733893324 39.0 35.0 40.0 30.0 41.0 52-53 36.780590648347484 39.0 35.0 40.0 30.0 41.0 54-55 36.67213379649843 39.0 35.0 40.0 30.0 41.0 56-57 36.4958864955246 38.0 35.0 40.0 30.0 41.0 58-59 36.35405673591305 38.0 35.0 40.0 30.0 41.0 60-61 36.19409519489302 38.0 34.0 40.0 29.0 41.0 62-63 35.970833714306025 38.0 34.0 40.0 29.0 41.0 64-65 35.765729008704746 37.5 34.0 40.0 29.0 41.0 66-67 35.517206021235545 37.0 34.0 40.0 28.5 41.0 68-69 35.24606207855626 36.5 34.0 39.0 28.0 41.0 70-71 34.967041605973876 36.0 33.0 39.0 28.0 40.0 72-73 34.66416358921798 36.0 33.0 39.0 28.0 40.0 74-75 34.34240035948545 35.0 33.0 38.0 28.0 40.0 76-77 33.28391164916736 34.5 31.5 36.5 26.5 39.0 78-79 33.651702428215 35.0 32.0 37.0 27.5 39.0 80-81 33.578461316658604 35.0 32.0 36.0 28.0 39.0 82-83 33.38438035486118 35.0 32.0 36.0 28.0 37.5 84-85 33.152335487421894 35.0 32.0 35.5 27.5 37.0 86-87 32.97998143903497 34.0 32.0 35.0 27.0 37.0 88-89 32.792396091629385 34.0 32.0 35.0 27.0 36.0 90-91 32.69628652667795 34.0 32.0 35.0 27.0 36.0 92-93 32.65752058181103 34.0 32.0 35.0 27.0 36.0 94-95 32.646786816076066 34.0 32.0 35.0 27.5 35.5 96-97 32.5556744333821 34.0 32.0 35.0 27.0 35.0 98-99 32.69137179856211 34.0 32.0 35.0 28.5 35.0 100-101 32.245944938408684 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 9.0 20 92.0 21 494.0 22 2331.0 23 7612.0 24 19645.0 25 40457.0 26 71109.0 27 110298.0 28 153783.0 29 202416.0 30 254645.0 31 312370.0 32 382203.0 33 471313.0 34 598161.0 35 776764.0 36 1071335.0 37 1531373.0 38 1627234.0 39 761281.0 40 23714.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.659427453908535 22.641385943408203 14.534032274330263 25.165154328352994 2 14.503055101588453 23.43382537586219 39.27308799866198 22.79003152388738 3 17.032701596374046 27.368134595595656 31.63541478963172 23.963749018398577 4 12.219549449845884 19.152164820901614 38.91275325791894 29.715532471333557 5 12.469886766759624 38.36033630606175 36.52331771838234 12.64645920879629 6 29.573799381634164 39.28093619860973 18.496500801020023 12.648763618736089 7 25.35183529028022 32.9219882401447 24.437530950660562 17.288645518914514 8 23.925061063893803 37.35806052307017 21.762194159366103 16.95468425366992 9 25.20963894291252 15.905393756545742 21.59660923894961 37.28835806159213 10-11 23.588397462250736 27.094343374423495 29.984863352648013 19.332395810677756 12-13 24.14474355892802 24.7574722148526 29.849909809520536 21.247874416698842 14-15 21.32453444683055 26.333656465455647 27.046289300137634 25.295519787576165 16-17 21.225908077087503 29.201732203570625 27.901474834239874 21.670884885102 18-19 21.259509221510527 28.643518055753773 29.242584088609934 20.854388634125762 20-21 21.91290259315315 27.97108695473989 28.987526678780885 21.128483773326078 22-23 21.61037947002723 27.91297960074008 28.882841152283323 21.593799776949368 24-25 21.47945131247284 28.00833329669205 28.924355403624304 21.587859987210805 26-27 21.512073034880444 28.133351397344175 28.827081939173542 21.52749362860184 28-29 21.48644523344188 28.207526788080905 28.824139229019117 21.4818887494581 30-31 21.67274744279493 28.091208127540888 28.738009476087097 21.498034953577086 32-33 21.514748226510466 28.2119530898229 28.72291851304063 21.550380170626006 34-35 21.63641070269659 28.243184470364774 28.697664046217415 21.42274078072122 36-37 21.62927261503827 28.150271589882774 28.690476829742074 21.52997896533688 38-39 21.48258755303381 28.249245845100802 28.745658299182665 21.522508302682724 40-41 21.668190411018543 28.115444022783198 28.668596947237972 21.547768618960287 42-43 21.56661396143026 28.240682131241858 28.46465772967028 21.72804617765761 44-45 21.650222887057026 28.27782873691122 28.33223170297669 21.73971667305506 46-47 21.67363585478722 28.254243225435694 28.20449963884143 21.86762128093566 48-49 21.62318370580256 28.32007988281632 28.22535362919158 21.831382782189543 50-51 21.61705322190749 28.37713713494076 28.150846346998833 21.854963296152913 52-53 21.731383605362613 28.306292070543336 28.027602831459596 21.93472149263445 54-55 21.689658002893676 28.23784116252026 28.081053594437478 21.991447240148588 56-57 21.68198939835035 28.266417068843673 28.0681959897175 21.98339754308848 58-59 21.660507556660612 28.260308736664552 28.052327999618086 22.026855707056754 60-61 21.7210901716331 28.198236070538734 28.07790152853839 22.002772229289775 62-63 21.670294703210757 28.323147007966387 28.053709770511492 21.952848518311363 64-65 21.6353613197561 28.2825878533963 27.994667897688203 22.087382929159393 66-67 21.688102779728922 28.43186232420079 27.815349780888226 22.064685115182066 68-69 21.69401043640056 28.389411110476388 27.812324034382296 22.104254418740755 70-71 21.693672452395383 28.23151751621069 27.847422339930418 22.22738769146351 72-73 21.738878167150997 28.243395532791777 27.77058382402687 22.247142476030362 74-75 21.69347539047323 28.30849367448397 27.716328931880525 22.28170200316228 76-77 21.863513505528445 28.27659859659315 27.66224656433401 22.197641333544397 78-79 21.849250752246217 28.249227777219136 27.626821318768137 22.27470015176651 80-81 21.87112072831373 28.300724586003522 27.563261566127228 22.264893119555524 82-83 21.83264987018633 28.3346615141787 27.67331282451365 22.159375791121317 84-85 21.95826250468278 28.332494104567708 27.631253888034145 22.077989502715365 86-87 21.869032717924767 28.34774560848504 27.658116815545853 22.125104858044338 88-89 21.81551374386722 28.339443177665125 27.71667643598298 22.12836664248467 90-91 21.870393947843443 28.359837041744306 27.72692278207971 22.04284622833254 92-93 21.924640146795248 28.31362846643714 27.737170531009923 22.024560855757684 94-95 21.768211683365767 28.357586480758822 27.864139474902476 22.01006236097293 96-97 21.656898286192487 28.361499301276965 28.00222620440625 21.9793762081243 98-99 21.834489486564166 28.9564332593425 28.114411628934317 21.094665625159017 100-101 25.501704462794677 36.153690126267605 28.91006698297187 9.43453842796584 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3791.0 1 3095.5 2 3009.0 3 3795.0 4 4694.0 5 6539.5 6 8136.0 7 9518.5 8 10382.0 9 10266.0 10 9739.5 11 9262.5 12 10236.0 13 13318.0 14 20066.5 15 29218.5 16 36163.0 17 39459.0 18 40783.0 19 41389.5 20 41719.5 21 42750.5 22 45585.0 23 52017.0 24 62835.0 25 77412.5 26 94739.5 27 113927.5 28 134873.5 29 156564.5 30 177293.5 31 197426.0 32 217380.5 33 235901.0 34 253147.0 35 269433.0 36 287511.5 37 303792.5 38 316839.5 39 328992.5 40 339400.0 41 348460.5 42 354934.0 43 360654.0 44 364933.5 45 366093.0 46 365413.0 47 363136.0 48 358490.0 49 350785.5 50 340395.5 51 327096.0 52 310548.0 53 292283.5 54 272053.5 55 249355.0 56 226436.0 57 203337.5 58 178883.5 59 152975.5 60 127699.5 61 104191.5 62 82834.5 63 64555.5 64 48587.0 65 36436.0 66 27500.5 67 20864.5 68 16107.5 69 11998.5 70 8804.0 71 6475.0 72 4621.0 73 3236.0 74 2271.5 75 1590.5 76 1109.0 77 765.0 78 540.0 79 393.0 80 275.0 81 189.5 82 147.0 83 103.5 84 72.0 85 54.5 86 44.5 87 33.5 88 23.5 89 16.0 90 9.5 91 7.5 92 6.5 93 4.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0031240196606554436 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 8.255489217321417E-4 14-15 0.0 16-17 0.0 18-19 4.335616639312687E-4 20-21 0.0 22-23 0.001556364020000347 24-25 2.4955620588054244E-4 26-27 0.0053796787006215345 28-29 3.866453182932667E-4 30-31 0.0 32-33 0.0 34-35 1.6190269000719806E-4 36-37 0.021197297435060658 38-39 0.009377212607133286 40-41 0.013518720669204263 42-43 0.0018190957534880235 44-45 0.003033065668936067 46-47 0.0 48-49 7.306301768592887E-4 50-51 1.945192641180623E-5 52-53 6.5540007717991305E-6 54-55 0.004372317690748487 56-57 0.009298710308434936 58-59 0.012092888593873407 60-61 0.006247894861966594 62-63 0.007279484439579059 64-65 8.268619606253989E-4 66-67 9.324354410390946E-5 68-69 0.0 70-71 8.88611313043918E-5 72-73 0.0 74-75 2.3705191834647266E-4 76-77 4.66495877342684E-5 78-79 7.911510076257464E-6 80-81 0.002151495240844179 82-83 0.002314822795389858 84-85 0.010382340124292158 86-87 0.01126082864536746 88-89 0.04645548556281712 90-91 4.6190775542233065E-4 92-93 5.818824533800779E-4 94-95 9.325980605877252E-6 96-97 0.009795033388350537 98-99 1.1150309517387236E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 270.0 20-21 954.0 22-23 1751.0 24-25 3285.0 26-27 4945.0 28-29 8853.0 30-31 20133.0 32-33 30164.0 34-35 44349.0 36-37 64144.0 38-39 66846.0 40-41 72630.0 42-43 81808.0 44-45 96193.0 46-47 97435.0 48-49 91726.0 50-51 85134.0 52-53 78912.0 54-55 88005.0 56-57 93162.0 58-59 97267.0 60-61 97133.0 62-63 93764.0 64-65 101782.0 66-67 108612.0 68-69 109611.0 70-71 109491.0 72-73 105161.0 74-75 107591.0 76-77 108898.0 78-79 114794.0 80-81 114955.0 82-83 110097.0 84-85 110538.0 86-87 115079.0 88-89 122734.0 90-91 128358.0 92-93 134057.0 94-95 161559.0 96-97 203991.0 98-99 644959.0 100-101 4387511.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.75476438138715 #Duplication Level Percentage of deduplicated Percentage of total 1 92.19647079365366 81.82876042086173 2 5.670561083840677 10.065786258130851 3 1.2113446519429325 3.225378275035451 4 0.42174575175765044 1.4972777930440504 5 0.1961326667115006 0.8703854310736183 6 0.1008505593606598 0.5370580580271874 7 0.05969106552493488 0.37085065194376754 8 0.03764341686711244 0.26728260756407196 9 0.0240066851893367 0.19176369188019432 >10 0.08057636003082702 1.0755509028330623 >50 8.301587961582254E-4 0.04826171409739059 >100 1.4680632455578766E-4 0.021644195508735944 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1878401751541608E-5 2 0.0 0.0 0.0 0.0 1.1878401751541608E-5 3 0.0 0.0 0.0 0.0 1.1878401751541608E-5 4 0.0 2.3756803503083216E-5 0.0 1.1878401751541608E-5 1.1878401751541608E-5 5 0.0 3.563520525462483E-5 0.0 1.1878401751541608E-5 1.1878401751541608E-5 6 1.1878401751541608E-5 3.563520525462483E-5 0.0 1.1878401751541608E-5 3.563520525462483E-5 7 1.1878401751541608E-5 3.563520525462483E-5 0.0 1.1878401751541608E-5 3.563520525462483E-5 8 1.1878401751541608E-5 3.563520525462483E-5 0.0 1.1878401751541608E-5 3.563520525462483E-5 9 2.3756803503083216E-5 3.563520525462483E-5 0.0 3.563520525462483E-5 3.563520525462483E-5 10-11 2.3756803503083216E-5 3.563520525462483E-5 0.0 4.157440613039563E-5 3.563520525462483E-5 12-13 2.3756803503083216E-5 3.563520525462483E-5 0.0 5.345280788193724E-5 3.563520525462483E-5 14-15 3.563520525462483E-5 5.939200875770804E-5 0.0 5.939200875770804E-5 4.751360700616643E-5 16-17 4.751360700616643E-5 6.533120963347884E-5 0.0 5.939200875770804E-5 5.939200875770804E-5 18-19 4.751360700616643E-5 1.187840175154161E-4 0.0 6.533120963347884E-5 7.127041050924965E-5 20-21 5.345280788193724E-5 1.6629762452158252E-4 0.0 1.6629762452158254E-4 7.127041050924965E-5 22-23 7.127041050924965E-5 2.1381123152774896E-4 0.0 3.741696551735607E-4 7.720961138502045E-5 24-25 8.314881226079126E-5 2.2568963327929055E-4 0.0 5.582848823224556E-4 8.314881226079126E-5 26-27 8.314881226079126E-5 2.2568963327929055E-4 0.0 9.027585331171622E-4 8.314881226079126E-5 28-29 8.314881226079126E-5 2.2568963327929055E-4 0.0 0.003343770093058963 8.314881226079126E-5 30-31 8.908801313656207E-5 2.494464367823738E-4 0.0 0.011070670432436779 8.908801313656207E-5 32-33 9.502721401233286E-5 2.494464367823738E-4 0.0 0.030177079649791456 9.502721401233286E-5 34-35 9.502721401233286E-5 3.2071684729162344E-4 0.0 0.058958447093776775 9.502721401233286E-5 36-37 9.502721401233286E-5 3.5635205254624827E-4 0.0 0.09557955969377956 9.502721401233286E-5 38-39 9.502721401233286E-5 3.6823045429778986E-4 0.0 0.1535699170448057 1.0690561576387448E-4 40-41 1.0690561576387448E-4 4.0980486042818546E-4 0.0 0.24471289368438445 1.0690561576387448E-4 42-43 1.1878401751541609E-4 4.216832621797271E-4 0.0 0.29516640512405745 1.0690561576387448E-4 44-45 1.306624192669577E-4 4.513792665585811E-4 0.0 0.36660905245870445 1.0690561576387448E-4 46-47 1.306624192669577E-4 4.810752709374351E-4 0.0 0.4411935370566342 1.0690561576387448E-4 48-49 1.425408210184993E-4 4.929536726889768E-4 0.0 0.5001341665477836 1.425408210184993E-4 50-51 1.722368253973533E-4 5.404672796951432E-4 0.0 0.55485202421626 1.6035842364581172E-4 52-53 1.7817602627312413E-4 5.46406480570914E-4 0.0 0.6240971672268719 1.6629762452158252E-4 54-55 1.7817602627312413E-4 5.701632840739972E-4 0.0 0.7479295054866932 1.6629762452158252E-4 56-57 1.7817602627312413E-4 5.701632840739972E-4 0.0 0.8733654279829726 1.722368253973533E-4 58-59 1.7817602627312413E-4 5.820416858255389E-4 0.0 0.9750861213822991 1.7817602627312413E-4 60-61 2.0193282977620734E-4 5.998592884528512E-4 0.0 1.0352561654547332 1.7817602627312413E-4 62-63 2.0787203065197814E-4 6.176768910801637E-4 0.0 1.0710754859365068 1.9005442802466573E-4 64-65 2.1381123152774896E-4 6.770688998378717E-4 0.0 1.0970000977592465 1.9005442802466573E-4 66-67 2.1381123152774896E-4 7.245825068440381E-4 0.0 1.1105474149568797 1.9005442802466573E-4 68-69 2.1381123152774896E-4 7.602177120986629E-4 0.0 1.1230078583942467 1.9005442802466573E-4 70-71 2.1381123152774896E-4 7.720961138502045E-4 0.0 1.1341854344424473 2.1975043240351976E-4 72-73 2.2568963327929055E-4 7.780353147259754E-4 0.0 1.1423102612405018 2.494464367823738E-4 74-75 2.2568963327929055E-4 8.017921182290587E-4 0.0 1.1488196254003467 2.613248385339154E-4 76-77 2.2568963327929055E-4 8.314881226079126E-4 0.0 1.155109239127788 2.672640394096862E-4 78-79 2.3162883415506138E-4 8.433665243594542E-4 0.0 1.160448580715106 2.73203240285457E-4 80-81 2.3756803503083217E-4 8.552449261109958E-4 0.0 1.1636260531836433 2.73203240285457E-4 82-83 2.3756803503083217E-4 8.552449261109958E-4 0.0 1.1655147190621384 2.73203240285457E-4 84-85 2.3756803503083217E-4 8.611841269867667E-4 0.0 1.167130181700348 2.850816420369986E-4 86-87 2.3756803503083217E-4 8.671233278625374E-4 0.0 1.1673736889362547 2.850816420369986E-4 88-89 2.3756803503083217E-4 8.79001729614079E-4 0.0 1.1674212025432609 2.9102084291276944E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7505 0.0 42.21203 1 GTATCAA 12765 0.0 31.583582 1 TCAACGC 15240 0.0 25.621178 4 ATCAACG 15400 0.0 25.328405 3 CAACGCA 15705 0.0 24.914698 5 AACGCAG 16455 0.0 23.853735 6 TATCAAC 16755 0.0 23.573761 2 GTACATG 18235 0.0 21.323761 1 TACATGG 18600 0.0 20.70726 2 ACGCAGA 19650 0.0 19.954754 7 ACATGGG 18965 0.0 19.725544 3 CGCAGAG 19965 0.0 19.701418 8 CATGGGG 13540 0.0 17.290718 4 AGAGTAC 21500 0.0 16.333988 10-11 GCAGAGT 24485 0.0 15.797017 9 GAGTACT 14560 0.0 15.531533 12-13 CAGAGTA 23890 0.0 14.614241 10-11 AGTACTT 16740 0.0 13.900115 12-13 GAGTACA 13705 0.0 13.499118 1 ATGGGGG 8220 0.0 13.443973 5 >>END_MODULE