##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139836_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6961009 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.366802427636568 31.0 31.0 34.0 30.0 34.0 2 31.632929938748823 31.0 31.0 34.0 30.0 34.0 3 31.635371826124633 31.0 31.0 34.0 30.0 34.0 4 35.43345957461052 37.0 35.0 37.0 33.0 37.0 5 35.23204538307593 37.0 35.0 37.0 33.0 37.0 6 35.22836445118804 37.0 35.0 37.0 32.0 37.0 7 35.08671501502153 37.0 35.0 37.0 32.0 37.0 8 35.06562195221986 37.0 35.0 37.0 32.0 37.0 9 36.5514051195739 38.0 35.0 39.0 32.0 39.0 10-11 36.447150765068685 38.0 35.0 39.0 32.0 39.0 12-13 36.377929262841064 38.0 35.0 39.0 32.0 39.0 14-15 37.37504936425165 39.0 36.0 40.0 32.0 41.0 16-17 37.40823456771856 39.0 36.0 40.0 32.0 41.0 18-19 37.42710553886656 39.0 36.0 40.0 32.0 41.0 20-21 37.40230731165721 39.0 36.0 40.0 32.0 41.0 22-23 37.33121145979936 39.0 36.0 40.0 32.0 41.0 24-25 37.225564351664964 39.0 36.0 40.0 31.0 41.0 26-27 37.031306734631656 39.0 36.0 40.0 31.0 41.0 28-29 36.87379073474608 39.0 36.0 40.0 30.5 41.0 30-31 36.71780066505235 38.5 35.5 40.0 30.0 41.0 32-33 36.95406759237319 39.0 36.0 40.0 31.0 41.0 34-35 36.95190879530044 39.0 36.0 40.0 30.5 41.0 36-37 36.83173168287155 38.5 35.0 40.0 30.0 41.0 38-39 36.70361329511405 38.0 35.0 40.0 30.0 41.0 40-41 36.67745665685895 38.0 35.0 40.0 30.0 41.0 42-43 36.59378082171936 38.0 35.0 40.0 30.0 41.0 44-45 36.56611633020083 38.0 35.0 40.0 30.0 41.0 46-47 36.58314507912843 38.0 35.0 40.0 30.0 41.0 48-49 36.49915872095353 38.0 35.0 40.0 30.0 41.0 50-51 36.41451956182951 38.0 35.0 40.0 30.0 41.0 52-53 36.27587449457066 38.0 35.0 40.0 29.5 41.0 54-55 36.15546389537807 38.0 34.0 40.0 29.0 41.0 56-57 35.97191656341269 38.0 34.0 40.0 28.5 41.0 58-59 35.81678311068576 38.0 34.0 40.0 28.0 41.0 60-61 35.65100361340541 38.0 34.0 40.0 28.0 41.0 62-63 35.423679475417394 37.0 34.0 40.0 28.0 41.0 64-65 35.21338672272205 37.0 33.5 39.5 28.0 41.0 66-67 34.96046109316377 36.0 33.0 39.0 28.0 40.5 68-69 34.69193985509082 36.0 33.0 39.0 28.0 40.0 70-71 34.412457211197 35.5 32.5 39.0 27.5 40.0 72-73 34.11278385073341 35.0 32.0 38.0 27.0 40.0 74-75 33.79441524717147 35.0 32.0 37.5 26.0 39.5 76-77 32.792698762207294 34.0 31.0 36.0 26.0 39.0 78-79 33.177000966086986 35.0 31.5 36.0 26.0 39.0 80-81 33.12114493180583 35.0 32.0 36.0 26.0 38.5 82-83 32.94341789588715 34.0 32.0 36.0 26.0 37.0 84-85 32.71087058575211 34.0 31.0 35.0 26.0 37.0 86-87 32.54872670610191 34.0 31.0 35.0 26.0 36.5 88-89 32.363848086448954 34.0 31.0 35.0 26.0 36.0 90-91 32.27631801855165 34.0 31.0 35.0 26.0 36.0 92-93 32.24997062922445 34.0 31.0 35.0 26.0 35.5 94-95 32.25641298170849 34.0 31.0 35.0 26.5 35.0 96-97 32.17203526290047 34.0 31.0 35.0 26.5 35.0 98-99 32.344664328672096 34.0 31.0 35.0 27.0 35.0 100-101 31.89909766194922 33.5 30.0 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 1.0 19 18.0 20 107.0 21 688.0 22 2804.0 23 9235.0 24 22414.0 25 44499.0 26 75866.0 27 114095.0 28 156141.0 29 199430.0 30 246101.0 31 297054.0 32 358043.0 33 436038.0 34 549075.0 35 705363.0 36 958221.0 37 1261589.0 38 1108642.0 39 409665.0 40 5917.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.14506172883845 23.58339143075379 15.397293696933879 24.874253143473883 2 15.038592153194621 24.16334105315269 37.979169560820765 22.818897232831926 3 17.43557579080849 27.36198157479756 31.731965868741156 23.470476765652794 4 12.816733895905033 19.6821179228471 37.86320345225814 29.63794472898972 5 12.616102062215406 38.40680280689193 36.21170436642159 12.765390764471071 6 30.117573472466418 39.31618246722566 17.839310364345167 12.726933695962755 7 25.65224380545981 32.886755354001124 23.91489509638617 17.546105744152896 8 24.29881932346302 37.412866439333726 21.209453974272982 17.078860262930274 9 25.26725651410593 15.631900490288118 21.11168079225296 37.98916220335299 10-11 24.003804620853096 27.04694103972571 29.54097602804421 19.408278311376986 12-13 24.463434536140234 24.69754803230598 29.49689266104865 21.342124770505134 14-15 21.55762189073452 26.225788531518923 26.730887720443974 25.485701857302583 16-17 21.418971014115915 29.154566529076458 27.622022899266476 21.804439557541155 18-19 21.47214648055586 28.434529714464713 29.10859443108465 20.984729373894776 20-21 22.098051058256775 27.737925678224773 28.938562462593016 21.22546080092544 22-23 21.831310783454622 27.730851848996707 28.80484569955229 21.632991667996386 24-25 21.691519435162242 27.836087644195562 28.85646698862116 21.61592593202104 26-27 21.75327752079956 27.922504279122297 28.765846916781477 21.558371283296662 28-29 21.686943735450438 27.972204397457407 28.814834584583863 21.526017282508295 30-31 21.85413165798797 27.889635068380734 28.74623836789828 21.50999490573301 32-33 21.72100352032704 28.022256768886166 28.68661766599436 21.570122044792438 34-35 21.80371229338442 28.00621917262648 28.723078275875892 21.46699025811321 36-37 21.761821318009655 28.020421782223266 28.6699956308621 21.54776126890498 38-39 21.701839478384795 28.04945379293098 28.728582403604975 21.520124325079255 40-41 21.867287334346504 27.957525999197134 28.59509957185808 21.580087094598284 42-43 21.782381294226234 28.109608792808373 28.37620329601095 21.731806616954447 44-45 21.877566356932547 28.168846963003396 28.205689281202673 21.747897398861383 46-47 21.931829016513074 28.114239272735276 28.04098840087571 21.91294330987594 48-49 21.83742378599738 28.26371040283205 28.04625044308781 21.852615368082756 50-51 21.903888368599862 28.338081855512304 27.9183244284049 21.839705347482937 52-53 22.008630014599746 28.222038355462498 27.816614519459783 21.952717110477977 54-55 21.95246964006658 28.132185698949385 27.934554165172752 21.980790495811284 56-57 21.96937423453145 28.168709813279563 27.907767331628808 21.954148620560183 58-59 21.9454841527215 28.195188989959156 27.886177068243267 21.97314978907608 60-61 21.988010190469453 28.128632547042404 27.95794756102555 21.925409701462595 62-63 21.971890102221238 28.22631513027626 27.87144159884521 21.930353168657295 64-65 21.889169223165922 28.214510710142203 27.831324340158435 22.06499572653344 66-67 21.921442836715393 28.299819428507885 27.72152414079636 22.057213593980364 68-69 21.91367300158005 28.30208201250985 27.704177718618478 22.08006726729162 70-71 21.920860287740105 28.083178213466475 27.79868133615987 22.19728016263355 72-73 21.93393124650537 28.156375895127795 27.708910025205956 22.20078283316088 74-75 21.905152494955892 28.108487646974815 27.72107099831192 22.26528885975737 76-77 22.033524588394744 28.022752256841976 27.71525311834567 22.2284700364176 78-79 22.020209303274008 28.0770296001221 27.618176280179757 22.284584816424136 80-81 22.019961673602097 28.084862209653355 27.579823139020814 22.31535297772373 82-83 22.00287111653431 28.038219813568727 27.70498939150596 22.253919678391 84-85 22.025405346280575 28.10092214624381 27.65524726335384 22.21842524412177 86-87 22.032286523889663 28.03463733315988 27.7198218906211 22.213254252329357 88-89 21.969525957021887 28.02591150039265 27.747159895188318 22.257402647397146 90-91 21.96103178901774 27.987859731096 27.853117744738874 22.197990735147393 92-93 21.992795124943566 27.873177393871874 27.892812408981253 22.241215072203303 94-95 21.83170997425901 27.90495314441995 28.004828364696756 22.258508516624286 96-97 21.726559010047765 27.995254808077984 28.08333581250472 22.194850369369526 98-99 21.896589778893777 28.64070965958407 28.13997650078791 21.322724060734245 100-101 25.707621390122792 35.826013349188116 28.96709391326344 9.499271347425642 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1265.0 1 1147.0 2 1546.0 3 2183.5 4 2770.0 5 3973.0 6 5112.5 7 6367.5 8 7418.5 9 7757.5 10 7592.5 11 7376.0 12 8302.5 13 11150.0 14 18008.5 15 27358.0 16 34324.5 17 37312.0 18 38087.0 19 37987.5 20 37253.5 21 36976.5 22 38121.0 23 42187.5 24 50030.0 25 61207.0 26 74823.5 27 89613.5 28 105711.5 29 122352.5 30 138080.0 31 154286.0 32 170883.5 33 186748.0 34 202013.5 35 216118.0 36 230621.0 37 243933.0 38 254917.0 39 264376.0 40 273422.0 41 281530.0 42 287451.0 43 293417.5 44 298506.0 45 301431.0 46 301078.0 47 298995.0 48 295989.5 49 289562.5 50 282196.0 51 272816.5 52 259242.5 53 244496.5 54 228560.5 55 210867.0 56 192629.5 57 174042.5 58 154423.5 59 133284.0 60 111967.0 61 91821.5 62 73564.5 63 57599.5 64 43458.5 65 32494.5 66 24410.0 67 18624.5 68 14386.5 69 10646.0 70 7695.0 71 5586.5 72 4129.0 73 3019.5 74 2159.5 75 1475.5 76 1017.5 77 710.5 78 505.0 79 366.5 80 260.0 81 180.5 82 136.5 83 97.5 84 69.5 85 50.0 86 34.0 87 26.0 88 18.5 89 14.0 90 10.5 91 8.0 92 7.5 93 4.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001982471219330416 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 9.91235609665208E-4 14-15 0.0 16-17 0.0 18-19 4.3815487093896874E-4 20-21 0.0 22-23 0.0014799714954616243 24-25 1.5091369619405718E-4 26-27 0.00476673586222451 28-29 4.0285404828033114E-4 30-31 0.0 32-33 0.0 34-35 2.1022429482435036E-4 36-37 0.017700916335904485 38-39 0.0076106804881325915 40-41 0.013223798424294827 42-43 0.0015610607803869818 44-45 0.0029134850428772915 46-47 0.0 48-49 5.643660221348992E-4 50-51 2.3450130093505048E-5 52-53 0.0 54-55 0.003790334344195554 56-57 0.0073297158871349685 58-59 0.010457268577786965 60-61 0.005261241747357653 62-63 0.005972986018856541 64-65 5.770334574181555E-4 66-67 5.164347171861469E-5 68-69 0.0 70-71 5.3254932604995205E-5 72-73 0.0 74-75 1.0069893298495164E-4 76-77 9.303494792694412E-6 78-79 0.0 80-81 0.0018304465104512233 82-83 0.001844324312658098 84-85 0.00861987337276168 86-87 0.009954371724943 88-89 0.04419243467903141 90-91 4.2488423763393016E-4 92-93 5.877409003015111E-4 94-95 0.0 96-97 0.008287655733558814 98-99 2.4442694347529164E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 248.0 20-21 828.0 22-23 1612.0 24-25 3000.0 26-27 3757.0 28-29 6735.0 30-31 16009.0 32-33 23576.0 34-35 34966.0 36-37 50223.0 38-39 53111.0 40-41 57174.0 42-43 66432.0 44-45 78551.0 46-47 78863.0 48-49 72626.0 50-51 66529.0 52-53 63431.0 54-55 70784.0 56-57 73633.0 58-59 74899.0 60-61 77607.0 62-63 74526.0 64-65 81284.0 66-67 86936.0 68-69 88366.0 70-71 87253.0 72-73 84891.0 74-75 87171.0 76-77 88460.0 78-79 93964.0 80-81 93926.0 82-83 91000.0 84-85 92176.0 86-87 97859.0 88-89 104084.0 90-91 112058.0 92-93 118022.0 94-95 144650.0 96-97 181619.0 98-99 550842.0 100-101 3627328.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.73942199480042 #Duplication Level Percentage of deduplicated Percentage of total 1 91.98168588814278 81.62401639821081 2 5.854562591486451 10.390610008017772 3 1.2812433011351405 3.410903699323272 4 0.4393047480658229 1.5593459769173017 5 0.17682030064698215 0.7845465638180017 6 0.09949791378019104 0.5297632415125586 7 0.04494833071157019 0.27920822208831125 8 0.03205345049679479 0.22755237360196143 9 0.01783522554345673 0.14244188452859255 >10 0.07091446304843338 0.9708819011929805 >50 9.65408110512955E-4 0.05260862686894695 >100 1.6837883181257702E-4 0.02812110391942003 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.4365733473408812E-5 0.0 3 0.0 0.0 0.0 1.4365733473408812E-5 0.0 4 0.0 5.746293389363525E-5 0.0 1.4365733473408812E-5 0.0 5 1.4365733473408812E-5 7.182866736704406E-5 0.0 1.4365733473408812E-5 0.0 6 1.4365733473408812E-5 7.182866736704406E-5 0.0 1.4365733473408812E-5 0.0 7 2.8731466946817624E-5 7.182866736704406E-5 0.0 2.8731466946817624E-5 0.0 8 2.8731466946817624E-5 8.619440084045287E-5 0.0 4.309720042022643E-5 0.0 9 2.8731466946817624E-5 1.292916012606793E-4 0.0 1.0056013431386168E-4 0.0 10-11 4.309720042022643E-5 1.292916012606793E-4 0.0 1.0056013431386168E-4 0.0 12-13 4.309720042022643E-5 1.292916012606793E-4 0.0 1.0056013431386168E-4 0.0 14-15 5.746293389363525E-5 1.5802306820749694E-4 0.0 1.0056013431386168E-4 0.0 16-17 7.182866736704406E-5 1.5802306820749694E-4 0.0 1.0774300105056609E-4 0.0 18-19 7.182866736704406E-5 1.6520593494420135E-4 0.0 1.3647446799738372E-4 0.0 20-21 8.619440084045287E-5 1.7238880168090573E-4 0.0 2.585832025213586E-4 7.182866736704406E-6 22-23 1.149258677872705E-4 2.0112026862772336E-4 0.0 4.59703471149082E-4 1.4365733473408812E-5 24-25 1.292916012606793E-4 2.1548600210113218E-4 0.0 0.0010558814102955478 2.8731466946817624E-5 26-27 1.5802306820749692E-4 2.29851735574541E-4 0.0 0.00314609563067653 4.309720042022643E-5 28-29 1.7238880168090573E-4 2.29851735574541E-4 0.0 0.015249226082023455 4.309720042022643E-5 30-31 1.9393740189101896E-4 2.442174690479498E-4 0.0 0.023610082963547382 4.309720042022643E-5 32-33 2.29851735574541E-4 2.5140033578465424E-4 0.0 0.03050563503078361 5.746293389363525E-5 34-35 3.0168040294158507E-4 3.0886326967828945E-4 0.0 0.041021351933318864 5.746293389363525E-5 36-37 3.160461364149939E-4 3.6632620357192466E-4 0.0 0.05561693714230222 5.746293389363525E-5 38-39 3.4477760336181146E-4 3.735090703086291E-4 0.0 0.08159736612896205 5.746293389363525E-5 40-41 3.4477760336181146E-4 4.237891374655599E-4 0.0 0.130756906074967 5.746293389363525E-5 42-43 3.4477760336181146E-4 4.3097200420226436E-4 0.0 0.15330392476148214 5.746293389363525E-5 44-45 3.591433368352203E-4 4.884349380958996E-4 0.0 0.18641694041768947 5.746293389363525E-5 46-47 3.735090703086291E-4 5.31532138516126E-4 0.0 0.22476626592495427 7.182866736704406E-5 48-49 3.735090703086291E-4 5.31532138516126E-4 0.0 0.25651453690118775 7.182866736704406E-5 50-51 3.735090703086291E-4 6.033608058831701E-4 0.0 0.28613667932335674 7.182866736704406E-5 52-53 3.735090703086291E-4 6.033608058831701E-4 0.0 0.326346367315428 7.182866736704406E-5 54-55 3.735090703086291E-4 6.464580063033965E-4 0.0 0.40992620466372043 7.182866736704406E-5 56-57 3.735090703086291E-4 6.608237397768053E-4 0.0 0.4971046582471018 7.182866736704406E-5 58-59 3.735090703086291E-4 6.608237397768053E-4 0.0 0.5852025187727814 7.182866736704406E-5 60-61 3.8069193704533353E-4 6.895552067236229E-4 0.0 0.6407907244481368 7.182866736704406E-5 62-63 3.878748037820379E-4 6.895552067236229E-4 0.0 0.6664838387653285 8.619440084045287E-5 64-65 3.878748037820379E-4 7.97298207774189E-4 0.0 0.6922703303500972 8.619440084045287E-5 66-67 3.878748037820379E-4 8.188468079843023E-4 0.0 0.7039424887972419 8.619440084045287E-5 68-69 3.878748037820379E-4 8.475782749311198E-4 0.0 0.7139913193618914 8.619440084045287E-5 70-71 3.878748037820379E-4 8.763097418779375E-4 0.0 0.7230920115172959 8.619440084045287E-5 72-73 4.0942340399215116E-4 8.834926086146419E-4 0.0 0.7300450265184257 1.0774300105056609E-4 74-75 4.1660627072885554E-4 9.409555425082772E-4 0.0 0.7360930003107309 1.149258677872705E-4 76-77 4.1660627072885554E-4 9.768698761917992E-4 0.0 0.7417028192320969 1.221087345239749E-4 78-79 4.1660627072885554E-4 9.768698761917992E-4 0.0 0.7464506941450586 1.292916012606793E-4 80-81 4.1660627072885554E-4 9.768698761917992E-4 0.0 0.7493022922395303 1.3647446799738372E-4 82-83 4.1660627072885554E-4 9.768698761917992E-4 0.0 0.7511482889908632 1.4365733473408813E-4 84-85 4.1660627072885554E-4 9.91235609665208E-4 0.0 0.7528362626739888 1.4365733473408813E-4 86-87 4.1660627072885554E-4 0.0010199670766120256 0.0 0.7530804801430367 1.4365733473408813E-4 88-89 4.1660627072885554E-4 0.001063064277032252 0.0 0.7531379430769304 1.4365733473408813E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7430 0.0 45.252472 1 GTATCAA 12360 0.0 31.354563 1 TCAACGC 15135 0.0 24.737183 4 ATCAACG 15355 0.0 24.489702 3 CAACGCA 15680 0.0 23.877378 5 AACGCAG 16030 0.0 23.407257 6 TATCAAC 16540 0.0 22.83492 2 ACGCAGA 19180 0.0 19.477806 7 CGCAGAG 19460 0.0 19.197548 8 TACATGG 16050 0.0 18.95354 2 GTACATG 16100 0.0 18.86918 1 ACATGGG 16765 0.0 18.120327 3 AGAGTAC 20605 0.0 16.746048 10-11 GAGTACT 14075 0.0 16.377773 12-13 GCAGAGT 22830 0.0 16.23787 9 GTGGTAT 3805 0.0 16.07603 1 CATGGGG 12620 0.0 16.069614 4 CAGAGTA 22590 0.0 15.447205 10-11 TGGTATC 3665 0.0 14.78588 2 GTACTTT 15595 0.0 14.76874 14-15 >>END_MODULE